Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d023944_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:10:30897430:30899575:1 gene:Zm00001d023944 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	ATGCCATCCATGGCGTCTTCCGCAGCCTTCTCACACGCAGGAATTAGTCACCCTCGTTTT CTCCATGCCAAGCCTGCATGTCCTCCCAAACCAGTCCCCGCGCAGCGTCCATCCCGCCCG GAGCTCATCAGCGCCGCCTCCACCCCCCGCACGTCCCAGGCTGAGCTCCGTCCGGACTCC AAGAACGCCTCCGCGCTGTCCGCTGAACTCCGCCGCCTCGCGCGCGCGGGGCGGCTCCCG TCCGCGCTCTCCCTCCTCGACCACCTCTCCCACCGTGGCGTCCCGGCTACCGCCTCTGCA TTCGCCACGCTCCTCTCGGCCTGTCGCTCCCTCCTCCACGCGCGCCAGATCCACGCGCAT CTCCGCATCCATGGGCTGGACACCAATGAGTTCCTCCTCGCCAGGCTTGTCGAGCTGTAC ATCACGCTCGGCGCCACTGACGACGCGCGCGGGGTGCTCGACGGGATGCAGCAGCACGGG GCGACCGCCTACTCGTGGAACGCGCTGCTGCACGGGCACGTCCGCTGGGGACGCGGGGAG GCAGCGGGCCCCGTCGCCGACGCGTTTGCCGAGATGCGCGCCGCGGGGGCCAACGCCAAC GAGTACACGTATGGCTGCGTGCTCAAGTCCATCTCCGGGAGCGTCAGGCCGTCGATGACC ATGGCCACCGCCACGCACGCGACGCTCGTCAAGAACGCTTTCGCAGGCGCGCCCGGGATG CTGATGACTGGGCTCATGGACGTCTACTTCAAGTGCGGGAAGGTGAAGCTCGCTGTGCGA GTGTTTGAGGAAATGCCTGAGAGGGACGTGGTCGCGTGGGGGGCAGCCATTGCTGGGTTC GCACACAAGGGGATGAAGCGCGAGGCCCTGGAACATTTTCGGTGGATGGTGGAGGATGGG GTCAAGGTGAATTGTGTGGTGCTCTCGTCAATTGTGCCAGTCATTGGAGAGCTGCGGGCG CGCAACTTGGGTAGAGAGGTTCATGGATTTGTCTTGAAGAAATTCGGAAATCGTAAAGAT GTTGCAAAGGTCCAGGCGGGGTTGGTTGACATGTACTGCAAATGCGGTGATATGATCTCA GGTAGGCGAGTGTTCTATAACAGCAAGAAGAGGAATGCTGTGTCGTGGACAGCTTTGATG TCTGGGTATGCATCCAATAGTAGACCAGACCAGGCGCTGAGGTGCATAGCTTGGATGCAG CAAGAAGGAATCAGGCCAGACCTCATTGCTGTGGGAACAGTTCTCCCAGTCTGCACAAAG TTGAAAGCGCTAAGGGAGGGAAAGCAGCTCCATGCATATGCTTTAAGGAGGTGGTTCTTG CCCAACGTTTCCTTATGCACGTCACTGATCACCATGTACGGTACATGTGACCACTTGGAA TACTCTCACCGAGTATTCCATGATATGGACAAGAAGACTGTACAAGCTTGGACTGCATTG GTTGATGCCAACCTCAAGAATGGAGACCCATTTACTGCTATGGATTTGTTCAGATCTATG CTGCTGACAAACCGCAGGCCTGATGCTGTTGCCATCACCAGGATGTTGAGTGCCTGCACT GATATTGGAGCATTACGAGTCGGCAAGGAAGTGCACCGTCAAGTGCTACAGTTGCGGATG GAACAACTCCCTTTGGTTGCAGCAGAAGTTGTAAACATGTATGGTAGGTGTGGAGACCTC AAAGCAGCACAGAGGGTTTTTAATCGAACAGAGTCCAAGGGATCCATGACCTGCACTGCG ATAATAGAAGCTTATGCGGTCAACCAACGCCATAAGGATGCGCTGCATCTCTTTACTTGG ATGCTGTCAAATAAATTTGTTCCTACCAAGGCCACATTCGATGTGGTTCTGAAAATCTGC GAAGCTGCAGGGTTGCATGATGAAGCCCTTGGAATTTTTAACTCTATGGTGCAAGAATAC AAACTAGAAACATCCCAAGAGAATTTTGACTGCATCATCCGCCTCCTTACTGATGCTGGC AGAATTTCTGAAGCACAACGCTTTGCTGACCTGAAATCTACACTGTTTAATTTACCAACT CCGCTTTTGAACTCTGAACAGGAATAG

Peptide Sequence

PEP ID	Zm00001d023944_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:10:30897430:30899575:1 gene:Zm00001d023944 transcript:Zm00001d023944_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	MPSMASSAAFSHAGISHPRFLHAKPACPPKPVPAQRPSRPELISAASTPRTSQAELRPDS KNASALSAELRRLARAGRLPSALSLLDHLSHRGVPATASAFATLLSACRSLLHARQIHAH LRIHGLDTNEFLLARLVELYITLGATDDARGVLDGMQQHGATAYSWNALLHGHVRWGRGE AAGPVADAFAEMRAAGANANEYTYGCVLKSISGSVRPSMTMATATHATLVKNAFAGAPGM LMTGLMDVYFKCGKVKLAVRVFEEMPERDVVAWGAAIAGFAHKGMKREALEHFRWMVEDG VKVNCVVLSSIVPVIGELRARNLGREVHGFVLKKFGNRKDVAKVQAGLVDMYCKCGDMIS GRRVFYNSKKRNAVSWTALMSGYASNSRPDQALRCIAWMQQEGIRPDLIAVGTVLPVCTK LKALREGKQLHAYALRRWFLPNVSLCTSLITMYGTCDHLEYSHRVFHDMDKKTVQAWTAL VDANLKNGDPFTAMDLFRSMLLTNRRPDAVAITRMLSACTDIGALRVGKEVHRQVLQLRM EQLPLVAAEVVNMYGRCGDLKAAQRVFNRTESKGSMTCTAIIEAYAVNQRHKDALHLFTW MLSNKFVPTKATFDVVLKICEAAGLHDEALGIFNSMVQEYKLETSQENFDCIIRLLTDAG RISEAQRFADLKSTLFNLPTPLLNSEQE

Transcript Sequence

Transcript ID	Zm00001d023944_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:10:30897430:30899575:1 gene:Zm00001d023944 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	ATGCCATCCATGGCGTCTTCCGCAGCCTTCTCACACGCAGGAATTAGTCACCCTCGTTTT CTCCATGCCAAGCCTGCATGTCCTCCCAAACCAGTCCCCGCGCAGCGTCCATCCCGCCCG GAGCTCATCAGCGCCGCCTCCACCCCCCGCACGTCCCAGGCTGAGCTCCGTCCGGACTCC AAGAACGCCTCCGCGCTGTCCGCTGAACTCCGCCGCCTCGCGCGCGCGGGGCGGCTCCCG TCCGCGCTCTCCCTCCTCGACCACCTCTCCCACCGTGGCGTCCCGGCTACCGCCTCTGCA TTCGCCACGCTCCTCTCGGCCTGTCGCTCCCTCCTCCACGCGCGCCAGATCCACGCGCAT CTCCGCATCCATGGGCTGGACACCAATGAGTTCCTCCTCGCCAGGCTTGTCGAGCTGTAC ATCACGCTCGGCGCCACTGACGACGCGCGCGGGGTGCTCGACGGGATGCAGCAGCACGGG GCGACCGCCTACTCGTGGAACGCGCTGCTGCACGGGCACGTCCGCTGGGGACGCGGGGAG GCAGCGGGCCCCGTCGCCGACGCGTTTGCCGAGATGCGCGCCGCGGGGGCCAACGCCAAC GAGTACACGTATGGCTGCGTGCTCAAGTCCATCTCCGGGAGCGTCAGGCCGTCGATGACC ATGGCCACCGCCACGCACGCGACGCTCGTCAAGAACGCTTTCGCAGGCGCGCCCGGGATG CTGATGACTGGGCTCATGGACGTCTACTTCAAGTGCGGGAAGGTGAAGCTCGCTGTGCGA GTGTTTGAGGAAATGCCTGAGAGGGACGTGGTCGCGTGGGGGGCAGCCATTGCTGGGTTC GCACACAAGGGGATGAAGCGCGAGGCCCTGGAACATTTTCGGTGGATGGTGGAGGATGGG GTCAAGGTGAATTGTGTGGTGCTCTCGTCAATTGTGCCAGTCATTGGAGAGCTGCGGGCG CGCAACTTGGGTAGAGAGGTTCATGGATTTGTCTTGAAGAAATTCGGAAATCGTAAAGAT GTTGCAAAGGTCCAGGCGGGGTTGGTTGACATGTACTGCAAATGCGGTGATATGATCTCA GGTAGGCGAGTGTTCTATAACAGCAAGAAGAGGAATGCTGTGTCGTGGACAGCTTTGATG TCTGGGTATGCATCCAATAGTAGACCAGACCAGGCGCTGAGGTGCATAGCTTGGATGCAG CAAGAAGGAATCAGGCCAGACCTCATTGCTGTGGGAACAGTTCTCCCAGTCTGCACAAAG TTGAAAGCGCTAAGGGAGGGAAAGCAGCTCCATGCATATGCTTTAAGGAGGTGGTTCTTG CCCAACGTTTCCTTATGCACGTCACTGATCACCATGTACGGTACATGTGACCACTTGGAA TACTCTCACCGAGTATTCCATGATATGGACAAGAAGACTGTACAAGCTTGGACTGCATTG GTTGATGCCAACCTCAAGAATGGAGACCCATTTACTGCTATGGATTTGTTCAGATCTATG CTGCTGACAAACCGCAGGCCTGATGCTGTTGCCATCACCAGGATGTTGAGTGCCTGCACT GATATTGGAGCATTACGAGTCGGCAAGGAAGTGCACCGTCAAGTGCTACAGTTGCGGATG GAACAACTCCCTTTGGTTGCAGCAGAAGTTGTAAACATGTATGGTAGGTGTGGAGACCTC AAAGCAGCACAGAGGGTTTTTAATCGAACAGAGTCCAAGGGATCCATGACCTGCACTGCG ATAATAGAAGCTTATGCGGTCAACCAACGCCATAAGGATGCGCTGCATCTCTTTACTTGG ATGCTGTCAAATAAATTTGTTCCTACCAAGGCCACATTCGATGTGGTTCTGAAAATCTGC GAAGCTGCAGGGTTGCATGATGAAGCCCTTGGAATTTTTAACTCTATGGTGCAAGAATAC AAACTAGAAACATCCCAAGAGAATTTTGACTGCATCATCCGCCTCCTTACTGATGCTGGC AGAATTTCTGAAGCACAACGCTTTGCTGACCTGAAATCTACACTGTTTAATTTACCAACT CCGCTTTTGAACTCTGAACAGGAATAGTTTTGTACAGATTCTTTTCCTTCTACACTAACA ATATTTGTTGTATGTTTTTTCAAAGAGTTACTGTTGGGGACTTGTT