Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d023943_T012
CDS Infomation

cds chromosome:B73_RefGen_v4:10:30683569:30694988:-1 gene:Zm00001d023943 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit delta
Sequence

ATGGTGGTTCTTGCAGCATCAATCGTTTCAAAGTCGGGAAAAGCACTTGTTTCAAGACAG
TTTGTTGACATGTCTCGCATAAGAATTGAAGGATTACTTGCTGCGTTCCCAAAACTGGTT
GGAACTGGGAAGCAGCACACTTATGTCGAAACTGAAAATGTGCGATATGTTTATCAACCT
ATTGAAGGTTTATATCTTCTACTTATCACAAACAAGCAGAGCAATATTCTTGAAGATCTG
GACACTTTGAGGCTCCTCTCCAAGCTCGTGCCTGAATACTCCCCTTCATTGGATGAGGAG
GGTATTTGTAAAACAGCATTTGAGATTATATTTGCTTTCGATGAAGCCATATCTCTTGGG
AACAAGGAAAATGTAACAGTGCAACAAGTCAAACAATATTGTGAGATGGAGAGCCATGAA
GAGAAGGCACACAAGCTGATGATGCAAACCAAAATCAATGAAACCAAGGATCTCATGAAG
AAGAGGGCTAATGAGCTTGACAAAATGAGGATGGAAAGAGGCAAACTTGACAAAGGAGGA
TACTCATCAATATCTGGTCCACGCGTGATTGAAAAAACTTTCAGTGACATGAGCATCAGT
GGTTCTGGATTAGGTGGACTGAGCACTGACATGGACTCATTTGCTAGCAAGCCCAAAGGC
CGTCCATCTACAGCAGCTACTGCACCTGGTAAAGGTTTTGGTATGAAATTAGGCAAGACA
CAGAAGACAAATCAATTCCTTGAATCTTTGAAAGCCGAAGGAGAAGTCATTTTGGAGGAT
GTACAACCAAGTGCAGTTTCTACAAGATCATCTGCTCTTCCAAGTGACCCTGTCACAGTA
ACTATAGAAGAGAAGCTCAATGTTGTTGTTAAAAGAGATGGTGGTATTAATAACTTTGAT
GTTCAAGGAACACTTGCTCTTCAGGTTCTCAATGATACTGATGGGTTCATCCAATTGCAG
ATTGAAAGCCAAGATATTCCTGGGCTTAGCTTCAAAACACACCCAAATATCAACAAGGAT
TTGTTTAACAGTCAGCAAATTTTGGGAGCAAAAGATCCAAACAGGCCTTTTCCGAGTGGT
CAAAATGAAACTCCTCTGGTGAAATGGAGAATCCAGGGGATGGATGAGTCATCTTTACCT
CTGTCAGGTGGAAATCTCTTTTTTTTCTTCTGTCTAACAATTTATCAATCAGTCAATTGC
TGGCCGTCTGTATCTGGAAATGAAACCTATGTGAACATTGAATATGAAGCTTCTGAGATG
TTTGATCTGCACAATGTTGTCATATCTATACCTCTGCCCGCAGTTCGGGAGGCTCCAAGT
GTCAGACAGATAGATGGAGAGTGGAAGTTGGACTCAAGAAACTCTGTGTTGGAATGGTCT
ATTCTCCTTATTGATCAGTCAAATCGCAGTGGTTCCATGGAATTTGTTGTTCCCCCAGCT
GATCCGTCATCATTTTTCCCCATCTCTGTTGGATTTTCTGCATCGAGTACTTTCAGTGAT
CTGAAGGTTACTGGAATCCTTCCTCTGAAGGAAGGCAACCCTCCGAAGTTTTCCCAGCGG
GCTCGTTTGCTCACAGCTAACTATCAAGTTGTTTAA

Peptide Sequence

PEP ID

Zm00001d023943_P012
PEP Infomation

pep chromosome:B73_RefGen_v4:10:30683569:30694988:-1 gene:Zm00001d023943 transcript:Zm00001d023943_T012 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit delta
Sequence

MVVLAASIVSKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP
IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGICKTAFEIIFAFDEAISLG
NKENVTVQQVKQYCEMESHEEKAHKLMMQTKINETKDLMKKRANELDKMRMERGKLDKGG
YSSISGPRVIEKTFSDMSISGSGLGGLSTDMDSFASKPKGRPSTAATAPGKGFGMKLGKT
QKTNQFLESLKAEGEVILEDVQPSAVSTRSSALPSDPVTVTIEEKLNVVVKRDGGINNFD
VQGTLALQVLNDTDGFIQLQIESQDIPGLSFKTHPNINKDLFNSQQILGAKDPNRPFPSG
QNETPLVKWRIQGMDESSLPLSGGNLFFFFCLTIYQSVNCWPSVSGNETYVNIEYEASEM
FDLHNVVISIPLPAVREAPSVRQIDGEWKLDSRNSVLEWSILLIDQSNRSGSMEFVVPPA
DPSSFFPISVGFSASSTFSDLKVTGILPLKEGNPPKFSQRARLLTANYQVV

Transcript Sequence

Transcript ID

Zm00001d023943_T012
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:30683569:30694988:-1 gene:Zm00001d023943 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit delta
Sequence

ACGTCGCCTAATAAAATTCCCCATTCCAATACACAGATCTCGCACCCGTAAGTGGCGACG
AATCTCGCGGTGCGGAGGCGCGACAGAGGCGGTGTCGACTCCGACGGACTCGCAGCTACC
GGTGGAGACGCCCCACCGGCGCACTCCTCCAACGTTCATAGTTTAAGGGCTTGATTTGGA
TAATTAGTCATCAACAGAAGTGATAAAAAATGGTGGTTCTTGCAGCATCAATCGTTTCAA
AGTCGGGAAAAGCACTTGTTTCAAGACAGTTTGTTGACATGTCTCGCATAAGAATTGAAG
GATTACTTGCTGCGTTCCCAAAACTGGTTGGAACTGGGAAGCAGCACACTTATGTCGAAA
CTGAAAATGTGCGATATGTTTATCAACCTATTGAAGGTTTATATCTTCTACTTATCACAA
ACAAGCAGAGCAATATTCTTGAAGATCTGGACACTTTGAGGCTCCTCTCCAAGCTCGTGC
CTGAATACTCCCCTTCATTGGATGAGGAGGGTATTTGTAAAACAGCATTTGAGATTATAT
TTGCTTTCGATGAAGCCATATCTCTTGGGAACAAGGAAAATGTAACAGTGCAACAAGTCA
AACAATATTGTGAGATGGAGAGCCATGAAGAGAAGGCACACAAGCTGATGATGCAAACCA
AAATCAATGAAACCAAGGATCTCATGAAGAAGAGGGCTAATGAGCTTGACAAAATGAGGA
TGGAAAGAGGCAAACTTGACAAAGGAGGATACTCATCAATATCTGGTCCACGCGTGATTG
AAAAAACTTTCAGTGACATGAGCATCAGTGGTTCTGGATTAGGTGGACTGAGCACTGACA
TGGACTCATTTGCTAGCAAGCCCAAAGGCCGTCCATCTACAGCAGCTACTGCACCTGGTA
AAGGTTTTGGTATGAAATTAGGCAAGACACAGAAGACAAATCAATTCCTTGAATCTTTGA
AAGCCGAAGGAGAAGTCATTTTGGAGGATGTACAACCAAGTGCAGTTTCTACAAGATCAT
CTGCTCTTCCAAGTGACCCTGTCACAGTAACTATAGAAGAGAAGCTCAATGTTGTTGTTA
AAAGAGATGGTGGTATTAATAACTTTGATGTTCAAGGAACACTTGCTCTTCAGGTTCTCA
ATGATACTGATGGGTTCATCCAATTGCAGATTGAAAGCCAAGATATTCCTGGGCTTAGCT
TCAAAACACACCCAAATATCAACAAGGATTTGTTTAACAGTCAGCAAATTTTGGGAGCAA
AAGATCCAAACAGGCCTTTTCCGAGTGGTCAAAATGAAACTCCTCTGGTGAAATGGAGAA
TCCAGGGGATGGATGAGTCATCTTTACCTCTGTCAGGTGGAAATCTCTTTTTTTTCTTCT
GTCTAACAATTTATCAATCAGTCAATTGCTGGCCGTCTGTATCTGGAAATGAAACCTATG
TGAACATTGAATATGAAGCTTCTGAGATGTTTGATCTGCACAATGTTGTCATATCTATAC
CTCTGCCCGCAGTTCGGGAGGCTCCAAGTGTCAGACAGATAGATGGAGAGTGGAAGTTGG
ACTCAAGAAACTCTGTGTTGGAATGGTCTATTCTCCTTATTGATCAGTCAAATCGCAGTG
GTTCCATGGAATTTGTTGTTCCCCCAGCTGATCCGTCATCATTTTTCCCCATCTCTGTTG
GATTTTCTGCATCGAGTACTTTCAGTGATCTGAAGGTTACTGGAATCCTTCCTCTGAAGG
AAGGCAACCCTCCGAAGTTTTCCCAGCGGGCTCGTTTGCTCACAGCTAACTATCAAGTTG
TTTAATGGTTGTACCGTTGTCCGAGTGTTGATCCACTTAAATATATTCGAATAGCATATT
TTTGTGACATGGCATGCTACTGGCATGAACTTTTGCAAGTCATGGGATGGAAGATCATTT
TGGGTTTTGAAAACCTT