Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d023929_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:10:29148241:29154174:-1 gene:Zm00001d023929 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:oxo-glutarate/malate transporter1 description: oxo-glutarate/malate transporter1
Sequence

ATGGCGTCCTCCACCGCGGCCTCGCCGCTCACCTGCCACCACCTCGGCAGCGTTGGTGCC
CGCCCTCGCCTCCCGTCCCTCTCCATCTCCCTCCGCCGCCGCTCCTCCTCTTCCTCTAAG
CCCACCTCCCTTTCCCACTCCCTCCCCTCCAAGCACTCGCTGGCCCCACCCCCCGCCGCA
TCCGCATCCTCCCGTCGCGGTCTCACCCCCGTACCCGCCTCCGCCTCCGCCGCCGCGGCT
CCAGCGCCGGATCCAGTGCCGGTTCCAGCACCGGCTCCAGCGCCGGCTCCAGCACCGGCC
GCCCCGCCGAAGAAGCCCGCGCTGCAGGGCGCGGCCATCAAGCCGCTCCTGGCCTCCATC
GCGACTGGCGTCCTCATCTGGCTCATCCCGCCCCCCGCCGGCGTGCCCCGCAACGCGTGG
CAGCTCCTAGCCATCTTCCTCTCCACCATCGTCGGCATCATCACCCAGCCGCTGCCCCTC
GGCGCGGTCGCCCTCCTCGGCCTCGGCGCCGCCGTGCTCAGCCGCACGCTCACGTTCGCC
GCGGCCTTCTCGGCCTTCGGCGACCCGATCCCCTGGCTCATCGCGCTCGCCTTCTTCTTC
GCGAGGGGGTTCATCAAGACCGGCCTCGGCTCCCGCGTCGCCTACGCCTTCGTCGCCGCC
TTCGGGTCCTCCTCCCTCGGCCTCGGCTACTCGCTCGTCTTCGCCGAGGCGCTCCTCGCC
CCCGCCATCCCCTCCGTCTCGGCGCGCGCTGGCGGCATCTTCCTACCGCTCGTCAAGTCT
CTCTGTGAGGCATGCGGCTCGCGCGCCGGCGACGGCACGGAGCGCCGGCTCGGAGCCTGG
CTCATGCTCACGTGCTTTCAGACCTCCGTCGTCTCGTCAGCCATGTTCCTCACTGCGATG
GCGGCCAACCCGCTCTCGGCCAACCTCACAGCTGCCACTATCGGCGAGGGGATCGGGTGG
ACGCTCTGGGCCAAGGCCGCCATTGTGCCGGGGCTGCTGTCGCTCGTGCTCGTGCCGCTC
ATTCTGTATGTGATCTACCCGCCGGAGGTGAAGGCGAGCCCCGATGCGCCACGCCTGGCC
AAGGAGCGGCTCGCCAAGATGGGACCCATGAGCAAGGAGGAGACGATCATGGCCGGCACG
CTGCTGCTTACGGTTGGTCTTTGGATCTTTGGAGGCATGCTGAATGTGGATGCGGTTTCT
GCAGCAATTCTTGGCCTAGCAGTCCTCTTAATCTCAGGGGTTGTCACATGGAAAGAGTGT
TTGGCAGAGTCTGTGGCGTGGGATACCCTTACATGGTTTGCAGCACTTATAGCAATGGCT
GGCTACCTCAACAAATTCGGGCTGATCTCTTGGTTCAGTGAGACTGTTGTGAAGGTACAC
TCTATTTTCTTCCCACAACTTTCATCTCTTATGAACCTTGGCTCTTGA

Peptide Sequence

PEP ID

Zm00001d023929_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:10:29148241:29154174:-1 gene:Zm00001d023929 transcript:Zm00001d023929_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:oxo-glutarate/malate transporter1 description: oxo-glutarate/malate transporter1
Sequence

MASSTAASPLTCHHLGSVGARPRLPSLSISLRRRSSSSSKPTSLSHSLPSKHSLAPPPAA
SASSRRGLTPVPASASAAAAPAPDPVPVPAPAPAPAPAPAAPPKKPALQGAAIKPLLASI
ATGVLIWLIPPPAGVPRNAWQLLAIFLSTIVGIITQPLPLGAVALLGLGAAVLSRTLTFA
AAFSAFGDPIPWLIALAFFFARGFIKTGLGSRVAYAFVAAFGSSSLGLGYSLVFAEALLA
PAIPSVSARAGGIFLPLVKSLCEACGSRAGDGTERRLGAWLMLTCFQTSVVSSAMFLTAM
AANPLSANLTAATIGEGIGWTLWAKAAIVPGLLSLVLVPLILYVIYPPEVKASPDAPRLA
KERLAKMGPMSKEETIMAGTLLLTVGLWIFGGMLNVDAVSAAILGLAVLLISGVVTWKEC
LAESVAWDTLTWFAALIAMAGYLNKFGLISWFSETVVKVHSIFFPQLSSLMNLGS

Transcript Sequence

Transcript ID

Zm00001d023929_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:29148241:29154174:-1 gene:Zm00001d023929 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:oxo-glutarate/malate transporter1 description: oxo-glutarate/malate transporter1
Sequence

ATTCCCAGTCCCACCACCACTTGTCTCACCGCCGCCATGGCGTCCTCCACCGCGGCCTCG
CCGCTCACCTGCCACCACCTCGGCAGCGTTGGTGCCCGCCCTCGCCTCCCGTCCCTCTCC
ATCTCCCTCCGCCGCCGCTCCTCCTCTTCCTCTAAGCCCACCTCCCTTTCCCACTCCCTC
CCCTCCAAGCACTCGCTGGCCCCACCCCCCGCCGCATCCGCATCCTCCCGTCGCGGTCTC
ACCCCCGTACCCGCCTCCGCCTCCGCCGCCGCGGCTCCAGCGCCGGATCCAGTGCCGGTT
CCAGCACCGGCTCCAGCGCCGGCTCCAGCACCGGCCGCCCCGCCGAAGAAGCCCGCGCTG
CAGGGCGCGGCCATCAAGCCGCTCCTGGCCTCCATCGCGACTGGCGTCCTCATCTGGCTC
ATCCCGCCCCCCGCCGGCGTGCCCCGCAACGCGTGGCAGCTCCTAGCCATCTTCCTCTCC
ACCATCGTCGGCATCATCACCCAGCCGCTGCCCCTCGGCGCGGTCGCCCTCCTCGGCCTC
GGCGCCGCCGTGCTCAGCCGCACGCTCACGTTCGCCGCGGCCTTCTCGGCCTTCGGCGAC
CCGATCCCCTGGCTCATCGCGCTCGCCTTCTTCTTCGCGAGGGGGTTCATCAAGACCGGC
CTCGGCTCCCGCGTCGCCTACGCCTTCGTCGCCGCCTTCGGGTCCTCCTCCCTCGGCCTC
GGCTACTCGCTCGTCTTCGCCGAGGCGCTCCTCGCCCCCGCCATCCCCTCCGTCTCGGCG
CGCGCTGGCGGCATCTTCCTACCGCTCGTCAAGTCTCTCTGTGAGGCATGCGGCTCGCGC
GCCGGCGACGGCACGGAGCGCCGGCTCGGAGCCTGGCTCATGCTCACGTGCTTTCAGACC
TCCGTCGTCTCGTCAGCCATGTTCCTCACTGCGATGGCGGCCAACCCGCTCTCGGCCAAC
CTCACAGCTGCCACTATCGGCGAGGGGATCGGGTGGACGCTCTGGGCCAAGGCCGCCATT
GTGCCGGGGCTGCTGTCGCTCGTGCTCGTGCCGCTCATTCTGTATGTGATCTACCCGCCG
GAGGTGAAGGCGAGCCCCGATGCGCCACGCCTGGCCAAGGAGCGGCTCGCCAAGATGGGA
CCCATGAGCAAGGAGGAGACGATCATGGCCGGCACGCTGCTGCTTACGGTTGGTCTTTGG
ATCTTTGGAGGCATGCTGAATGTGGATGCGGTTTCTGCAGCAATTCTTGGCCTAGCAGTC
CTCTTAATCTCAGGGGTTGTCACATGGAAAGAGTGTTTGGCAGAGTCTGTGGCGTGGGAT
ACCCTTACATGGTTTGCAGCACTTATAGCAATGGCTGGCTACCTCAACAAATTCGGGCTG
ATCTCTTGGTTCAGTGAGACTGTTGTGAAGGTACACTCTATTTTCTTCCCACAACTTTCA
TCTCTTATGAACCTTGGCTCTTGACATTTATAGGTTTAATGTTTTTCTTTTATTTATGAG
AAAATTCCTCAATTGACAATTTAGATTGACATATTTCCTTTATTTTTTTTCCACATAGCG
ATACCTGAATTCATTACTTGAAGCAACAAATTACAAACATAACGAGTTCAAAGACATAAC
CTCACAGATTGACAGATCCCACCCAACTAGCATCCATACTTCTGATCAGAGGGACCAGAA
CATATGGAACCACCTGACACTGACATGCTTCCTTTATGGCCCTGAAAACCTTTTTCTCTC
TTATATGACACCAGGTCTATCTTTTTTTCCTTTGTTTGACACTTCCATCAGTTTTGGCTG
TTTTTTTAAACGAGGTAATCCCATTTCCATTCATAGAACAGAAATACAAGTCAGAAACAT
ATTACAGACTGGCAAGAGGAAGCAAAGATAGACACTAAACCACCAGCACAACAGGAAGCT
ACCACCGACACCAACTACTAGTTTAACAAAACAGAGCAAAACTAAGACTTAACCACCCCA
CACGACATAACAACCTAAAGATAACTAAACATGTGAAAACAACTCCGTACTACTGTCTTC
AGTAGCACACCAAACAACCTATCAGTTTCAGCTGTTAACATGTTAAGAGATAAGATGAAA
AGACCTTTTTGCCCCTGAGCCCTCTTTGTGCCAGTACTGTAGTCCCAGCACCAGGATTTC
TGGCGTAAAATATGTGAGACAACAAGCAATTTTAAAAAACCATCCGTAGTTTTGGTTATT
ATGATAAAAGTATGAAACATCTTTCTCGGTATCTATCAACATGTTAACTTCATACATTAG
TTTTTCATCCTATTTATTTCCCAATATTTTTCAACATGTTAATTTCATACATGAATTCTT
TTATCCTATCTATTGGGGAGGGGAAAATGTGCTTAATATATGTCGTGAGGACATTATGGT
TCTTTTTCTTAAAGAATGAAACAGTAAGTTTTGTGAGGAGGCCGGCCTTATTTTACCTTT
TACTTTTTGTAAGTCCTCTTTTTGTGAGGCTAGATTTCAAGCTCTCAGAATGTGTGAAGA
TAAACGAGTTGCTTTTCTTGTTTGTATAGTTTCTGTTGCTGAGCTCACGTTCTTGCTTGA
GGTTCCCAACGCTCCCTCTGGGAGCTTTGTTCATAGTTGTGGCCCCTTTTATTGTACAGT
TTCTTGTTTTTATTGAAATAAAAAGCTCTAGCAGTGGGGGCCTCCCCTGCTGTATTTTCT
ATTAAAAACAGTAGTTCTTTCATTGTAGTACATGCCACATTCTCAGTTGCTGGTGTGCAC
CTTATTTACATTCACTTTAAGTAGCAGTTCACTTCTTTTAAATACCACAATTTTTTATTA
TATTTCATAAAAATATGTTTATACTGTATTTTGGCATTTCACAGAGTTCCTTTCATCCCA
CCTTTCAGTTCTAGACTCTTGACATATCACATAAACTAGAAATCCAAAGATAACCTTCTG
TCTGAACAAGAAAACAGAAAGTTACAGAGCACAGAAACAAGGGAGCAGGATAAGGCCCTG
TTTGTTTTATCTTATCCGGTGTCTGTGGCTGAAAAAAGTTGAAAAAAGATCAGAATCACA
CCAGACGTCCTTGATACACTTCTGTTGGCCACCCTCAGCATTGGGTAGGGTTTTCAACAG
GAAATAACCTTGACGTGAGGGAATTAGTGCTTCCCCACAGCATAGCTGCTGCAGTATATG
TGACTCCCGTCCATGGAAAGAAACAGGCCCTAAGAAAACCAAAGTATGTCTGCTTGCTTC
GCTGAGAGGATTGGGGCAGATGAACTCCAAGCCTTGGGTATGGTAAATCAGGCGCCCAGG
CTGCTTGGATGTTGTGCTCAGGCTGCACGCTGCAGGCTCTTTGGTCAGTCAGGCTGCCAC
CCCCAATGAGGCTTGGGGCACAGCTGCCCTGGCCGCTGATCAGGCCAGTGCCGCCCTGGC
CGTTTGGGCTGGTGCTGCCTATGCCACTCGGGTTGCCACTGTCAATCTGATCCACTGTGC
ATGCTTCCCTTCGACCTCAACTGGATATGAATGACCTATTGACTATAGTTTAGGGACGGA
GGGGCACGGGAGAGGGAACAACAGAGAGGATAGAAGGCGTTTGAGCTTGTGACGGGAGAA
GGCTGAGGGCCATGCAGCTAGGGATGGCAACGGGGAATTCCCCGTCGGGTTTTAGCTCCC
CATCCCCGTCCCCGCGACGAAAATTTTTCCCCGCGGGGATCCCCACGAACGTTTGCGGGG
GACATTTCTTCCCCATCCCCGTTACCCGCGGGGATAAATCCCCATCAGGGATCCCCGTAC
CCGCTTAAATTATAATTAGATCGTACTTCATTTGTTATTAATGTAAAACATTGTCACTTA
TACACATTGTTAGATGTAAAAATCATTATGTGTACATTAAAATGAACGCATTTGTACAAC
TAGTGATCTTTTGTCAAGATAATTATTTATTTCTATTATTAACTATTATATAAAAACATC
GTCATATGTAAGTTTAACGGGTCCCCACGGGGAACGGGTCCCCGTCCCCATTTACCCGTC
GGGGGAGAAAATTTCCCCATTTACATCCCCGTGGGGGAAGAAATCTCCCCATCCCCGTCC
CCTAATAGAGGAATTCCCCGCGGGGAATCGGGGATCGGGTCCCCATTGCCATCTCTACAT
GCAGCTTATTTGGCCTCGAGGAGAGGGGCATTTTAGACTATCTCCAACTAATTTGACATG
GACTTGAAGGTTATCATTGTCGGCCTTAGATGGAACCATATCAACTTCTAGTGTCAAATA
AGGAATTTCTCGTTGTTAGGATTTCATGATTAGCATGCTTTACGAACTAAACTACCTTCT
TTAAGAGGTGTTGCCACGATGAATGCTTTTTACTGCAATACAACATGATCCAGCTATCTG
GAGCCTAGACATTTACTGTTTCTTTTTTTACTATTCATTTTTAACCTAGTTCCACAAAAA
TATGAAAATTTACTTTGGTCAAAGATAGGTTATGAAGGGCATGCATCTCTTTGCCCTTAG
CCAGAAACAAGTAGCAAATTATTGTGCTCTTGTCTCTTCACTGAAAGAAGAGCACCAAAA
TTGTGAAGGGGTAGGTTGGGTAGTCATCATGATATAGTAAGAACCTTATGTGACTTGTTT
GACACTGTTTAGATTTGTCATATGAATGGTTATCTTGGTTGTCTGAACTTAATACTGGCT
CTGAATTCATATGCTTATGGATGTATCTATGCAAACTAGGAAATAAAAAAAATCGAAATA
CATTGGTTTGGTAATTGTAACATGATGCAGTTTAAATTATCTTGGGTCTGATGTATTCCT
ATTTTTTTGTGACATCTACAGTACATATAGTTTTTTTAAGTACTTCTGCATATTTATCAT
TTATTTGACTCTATTGCTTTTGTCTCAGTTTGTTGGAGGGCTTGGCATGTCATGGCAACT
CTCATTCGGTGTGCTGGTGCTGCTGTACTTCTACTCGCACTATTTCTTTGCCAGTGGTGC
CGCACACATCGGAGCAATGTTCACCGCGTTCCTGTCGGTGGCGAGTGCCCTGGGCACCCC
GTCGCTTTTCGCTGCCATGGTTCTTTCATTCCTCTCGAACCTCATGGGCGGGACCACCCA
CTACGGCATCGGCTCTGCTCCCGTCTTCTACGGCGCCGGGTATGTCCCATTGGCTCAGTG
GTGGGGCTATGGGTTTGTCATCTCCGTTGTAAACATCATCATCTGGCTCGGGGTGGGCGG
CTTCTGGTGGAAGATAATCGGGCTGTGGTGAGCAGAGAGCAGCACATTAACTGCGACATC
CCTTTTGTTTTTCTGTTGTTTTTTTGTCGAGTGGGGGGAGGAAAACTATTTCCTGAATTT
GCGGTGCTACAGATGCCGCTGTCCACAGTTTTGTCGTCGACATGATCGCAATGCAACCCA
TTCTTTTTTAGTTGGTATCGATACATTTGTTCGAACCTTCCGGTGGCTAATTGCGAGGCC
AGGGTGCAGTTTTTAACGCGCAAAATTTGTTATATAGAGTTTGTGCTCAATGGTTCTTGG
AGATCCCTATATATATATATATCCCCACGATGATGAC