Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d023923_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:10:28420100:28422811:1 gene:Zm00001d023923 gene_biotype:protein_coding transcript_biotype:protein_coding description:Disease resistance protein RPM1
Sequence

ATGGCAGAAGGTTTGATACTAGTTGTGCTTCAAAAAATCGCAACCACCTTAGGAGGAGCT
GCATTGAGTGTAATTAAGTCAAAATTAGGGAAAGGAGCCAACATTTTACTTGAAGCAGAG
AACAGCATGAAAGAAATTGAGAGTGAGTTCGAAATAATGCAAGCATACATAAGTCAAGCA
GACCCGTACAGTGAAAGTAACAAAATTCTGAAACCATGGTTGAAGAATGTAAGAAAAATA
GCTTCTGAAGTCGAGGACATCATTGATGAATATGCCTTTCTACTTGGAAAACTGGACAAC
GCAGGATACTTGGCGAAGAAGTTCCACCATTCGAGATACATCACTGCATGGAGTGACATT
TCTTCTCAGTTGAAGCAAGTGCAAGCACGCCTACAAAATTTGACAGTTCTGAAAGACAGA
TATGGCATCACAGTAGTTGGACCTGGTGGTGGATCATCAAGCCATAATAACAGTCGTAAG
AATTACCTGTCTGAATCTTCCTACCTGAATGATGATGGTGATGGTGTAATGGTAGGCAAC
GAAGATGAAGTAAAGAAGTTGACAGAATGCATAGATGGTGCTGGTGCAGATCGTGCAGTT
ATCTCCATCTGGGGAATGGGCGGTTCAGGAAAAACAATCCTTGCAAGGGGCATCTATAGA
AAACGAGAAGTTAGAAAGAACTTCCAGTGCTGTGCCTGGATAACAGTATCACTGAATTAT
CAAGTCGAAGACCTTTTGAACAAGCTCATAAAGGAACTCCACATCCAAGATGTGCCTGAT
GCAACTGACAGTACACATTTGGTTGCTAGGATCCAGAATCATCTCAAGGACAAGAGGTAC
CTTGTTGTTTTGGATGACATGTGGAACAGGGAGTCTTGGTTATTCTTTGATCGAGTATTT
GTCAAGAATCTTTATGGAAGTAGAGTCATCGTTACCACTCGAACAGAAGCTGTTGCGTCA
ATAGCTGAGCTGAACCATACTATAAGAATTGGCCTTCTTTCACAGGGGGAGTCATGGAAG
CTCTTCGGCAGAAAGGCATTCTCAAAGATAGGCAAGGAAGAACCGACCTGCCCTCAGGGC
CTTGTTCAATGGGCAAACAAAATCCTCGAGAGATGCCAAGGTCTGCCACTTGCTATTGTA
GCCATAGGGAGCCTTCTGTCATACAGAGAAATGGAGGAACAAGAGTGGAGACTCTTCTAC
AATCAACTTAATTGGCAACTGACAAATAACCCAGAACTCAACTTCGTATCGAGCGTCCTA
AAGCTAAGCTTGAATGATCTTCCAAGCCACTTGAGGAATTGCTTCCTGTACTGTGGCTTG
TTCCCCAAAGACTATCAAATACGTCGGAAGTGTCTAATCAGACTGTGGGTAGCTGAAGGT
TTTGTGGAAGACCGGGGAACAGAGATTACACTGGAAGAAGTGGCCGAGGAGTACCTCAAG
GAACTCACACGGCGTTCACTGTTTCAAGTGATGGAAAGGAATGAATTTTCACGGCCAAGA
AGATTCCAGGTGCACGATCTTGTTAGAGAGATGACACTGGCCATATCAAGAAATGAGAGG
TTTGGTCATGTAAGTGACCAGCCAGATGTAACAGACATTGGCGATGTAGGAAAACGTGTA
TCAGTGCACAGTGGGGGCCAAATCTATCAGCCAGGTCCGTCTTCGCAGCATCTGCGTTCA
TTTTTGTTGTTTGACAAACACGTGCCGCTTTCATGGATCAGCATCGCTTCATCGGACTTC
AAACTGTTAAGAGTCCTGTGCCTCAGGTACTCCCTCCTTGAGGACATTCCAGATGCCATG
ACTTGTTTGTTCAATCTGCACCATCTAGACTGCTCTCGTACTAAAGTAAGGAAGGTACCA
AGATCAGTGGCAAGGCTGAAGAAACTAGAGACATTGCATCTCAGGTTCGCCCGTGTGAGG
GAGTTGCCGTCTGAAATAACAATGCTCACAAACCTCCGCCACTTGTCTGTGAGTGACGAC
TTGTATGGCACATCAATTTGTGGTACTATCCGCAGTCTCAAGCACCTGCAAACTCTTCGA
GAGGTGAAAGTCAACAAAGATTTGGCTAAAAGTCTTGGTTACCTGACACAACTAAGAAGC
TTAGGAATTACTGGAGTCATACAAAGCCACAATGCAGATCTTTGGGCTTCTATCAGGAAG
ATGACTGTCCTTAACAAACTAGCCGTCGCAACTCCTGGCGAGAGTAACGAAGTGCTTAGT
TTTGAAGAGCTGAGGCCGCTCAAGAACCTGGAGAAGTTCTACTTGACCGGCAAGTTGGCA
GAAGGGAAGCTTTTTCCAGTATCTAATGGTTTTCAGAAACTTAAGGTCCTAACAATGCGC
TGGTCTAAGCTAACACACGACCCCCTAAGTTCCTTATGTCAAATGGAAAATCTCGTCTAC
CTTAATCTTTACTGTGCATACGATGGGGAATGCTTGATCTTCTCTTCTGGGTGGTTTCCA
AAGCTCAAGCAACTCTACCTAGGCAAGCTTGAGAGACTGAGGTCAATTCAAATAAGTGAT
GGCGCCATTGAAAATTTAACATACCTGGAACTTCATGAGCTGTGGAATCTAAAAAGTGTC
CCTGAAGGCCTTGTATACCTTAGGTCTCTTCAGCACTTGTATGCACGAAAGATGCCTGCA
GATTTCGTGGAGGAACTGGAGGGAAGTTGCCAGGGCTTTGTTCGGCACATTGCCAACATT
GAATGTATGTGA

Peptide Sequence

PEP ID

Zm00001d023923_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:10:28420100:28422811:1 gene:Zm00001d023923 transcript:Zm00001d023923_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Disease resistance protein RPM1
Sequence

MAEGLILVVLQKIATTLGGAALSVIKSKLGKGANILLEAENSMKEIESEFEIMQAYISQA
DPYSESNKILKPWLKNVRKIASEVEDIIDEYAFLLGKLDNAGYLAKKFHHSRYITAWSDI
SSQLKQVQARLQNLTVLKDRYGITVVGPGGGSSSHNNSRKNYLSESSYLNDDGDGVMVGN
EDEVKKLTECIDGAGADRAVISIWGMGGSGKTILARGIYRKREVRKNFQCCAWITVSLNY
QVEDLLNKLIKELHIQDVPDATDSTHLVARIQNHLKDKRYLVVLDDMWNRESWLFFDRVF
VKNLYGSRVIVTTRTEAVASIAELNHTIRIGLLSQGESWKLFGRKAFSKIGKEEPTCPQG
LVQWANKILERCQGLPLAIVAIGSLLSYREMEEQEWRLFYNQLNWQLTNNPELNFVSSVL
KLSLNDLPSHLRNCFLYCGLFPKDYQIRRKCLIRLWVAEGFVEDRGTEITLEEVAEEYLK
ELTRRSLFQVMERNEFSRPRRFQVHDLVREMTLAISRNERFGHVSDQPDVTDIGDVGKRV
SVHSGGQIYQPGPSSQHLRSFLLFDKHVPLSWISIASSDFKLLRVLCLRYSLLEDIPDAM
TCLFNLHHLDCSRTKVRKVPRSVARLKKLETLHLRFARVRELPSEITMLTNLRHLSVSDD
LYGTSICGTIRSLKHLQTLREVKVNKDLAKSLGYLTQLRSLGITGVIQSHNADLWASIRK
MTVLNKLAVATPGESNEVLSFEELRPLKNLEKFYLTGKLAEGKLFPVSNGFQKLKVLTMR
WSKLTHDPLSSLCQMENLVYLNLYCAYDGECLIFSSGWFPKLKQLYLGKLERLRSIQISD
GAIENLTYLELHELWNLKSVPEGLVYLRSLQHLYARKMPADFVEELEGSCQGFVRHIANI
ECM

Transcript Sequence

Transcript ID

Zm00001d023923_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:28420100:28422811:1 gene:Zm00001d023923 gene_biotype:protein_coding transcript_biotype:protein_coding description:Disease resistance protein RPM1
Sequence

ATGGCAGAAGGTTTGATACTAGTTGTGCTTCAAAAAATCGCAACCACCTTAGGAGGAGCT
GCATTGAGTGTAATTAAGTCAAAATTAGGGAAAGGAGCCAACATTTTACTTGAAGCAGAG
AACAGCATGAAAGAAATTGAGAGTGAGTTCGAAATAATGCAAGCATACATAAGTCAAGCA
GACCCGTACAGTGAAAGTAACAAAATTCTGAAACCATGGTTGAAGAATGTAAGAAAAATA
GCTTCTGAAGTCGAGGACATCATTGATGAATATGCCTTTCTACTTGGAAAACTGGACAAC
GCAGGATACTTGGCGAAGAAGTTCCACCATTCGAGATACATCACTGCATGGAGTGACATT
TCTTCTCAGTTGAAGCAAGTGCAAGCACGCCTACAAAATTTGACAGTTCTGAAAGACAGA
TATGGCATCACAGTAGTTGGACCTGGTGGTGGATCATCAAGCCATAATAACAGTCGTAAG
AATTACCTGTCTGAATCTTCCTACCTGAATGATGATGGTGATGGTGTAATGGTAGGCAAC
GAAGATGAAGTAAAGAAGTTGACAGAATGCATAGATGGTGCTGGTGCAGATCGTGCAGTT
ATCTCCATCTGGGGAATGGGCGGTTCAGGAAAAACAATCCTTGCAAGGGGCATCTATAGA
AAACGAGAAGTTAGAAAGAACTTCCAGTGCTGTGCCTGGATAACAGTATCACTGAATTAT
CAAGTCGAAGACCTTTTGAACAAGCTCATAAAGGAACTCCACATCCAAGATGTGCCTGAT
GCAACTGACAGTACACATTTGGTTGCTAGGATCCAGAATCATCTCAAGGACAAGAGGTAC
CTTGTTGTTTTGGATGACATGTGGAACAGGGAGTCTTGGTTATTCTTTGATCGAGTATTT
GTCAAGAATCTTTATGGAAGTAGAGTCATCGTTACCACTCGAACAGAAGCTGTTGCGTCA
ATAGCTGAGCTGAACCATACTATAAGAATTGGCCTTCTTTCACAGGGGGAGTCATGGAAG
CTCTTCGGCAGAAAGGCATTCTCAAAGATAGGCAAGGAAGAACCGACCTGCCCTCAGGGC
CTTGTTCAATGGGCAAACAAAATCCTCGAGAGATGCCAAGGTCTGCCACTTGCTATTGTA
GCCATAGGGAGCCTTCTGTCATACAGAGAAATGGAGGAACAAGAGTGGAGACTCTTCTAC
AATCAACTTAATTGGCAACTGACAAATAACCCAGAACTCAACTTCGTATCGAGCGTCCTA
AAGCTAAGCTTGAATGATCTTCCAAGCCACTTGAGGAATTGCTTCCTGTACTGTGGCTTG
TTCCCCAAAGACTATCAAATACGTCGGAAGTGTCTAATCAGACTGTGGGTAGCTGAAGGT
TTTGTGGAAGACCGGGGAACAGAGATTACACTGGAAGAAGTGGCCGAGGAGTACCTCAAG
GAACTCACACGGCGTTCACTGTTTCAAGTGATGGAAAGGAATGAATTTTCACGGCCAAGA
AGATTCCAGGTGCACGATCTTGTTAGAGAGATGACACTGGCCATATCAAGAAATGAGAGG
TTTGGTCATGTAAGTGACCAGCCAGATGTAACAGACATTGGCGATGTAGGAAAACGTGTA
TCAGTGCACAGTGGGGGCCAAATCTATCAGCCAGGTCCGTCTTCGCAGCATCTGCGTTCA
TTTTTGTTGTTTGACAAACACGTGCCGCTTTCATGGATCAGCATCGCTTCATCGGACTTC
AAACTGTTAAGAGTCCTGTGCCTCAGGTACTCCCTCCTTGAGGACATTCCAGATGCCATG
ACTTGTTTGTTCAATCTGCACCATCTAGACTGCTCTCGTACTAAAGTAAGGAAGGTACCA
AGATCAGTGGCAAGGCTGAAGAAACTAGAGACATTGCATCTCAGGTTCGCCCGTGTGAGG
GAGTTGCCGTCTGAAATAACAATGCTCACAAACCTCCGCCACTTGTCTGTGAGTGACGAC
TTGTATGGCACATCAATTTGTGGTACTATCCGCAGTCTCAAGCACCTGCAAACTCTTCGA
GAGGTGAAAGTCAACAAAGATTTGGCTAAAAGTCTTGGTTACCTGACACAACTAAGAAGC
TTAGGAATTACTGGAGTCATACAAAGCCACAATGCAGATCTTTGGGCTTCTATCAGGAAG
ATGACTGTCCTTAACAAACTAGCCGTCGCAACTCCTGGCGAGAGTAACGAAGTGCTTAGT
TTTGAAGAGCTGAGGCCGCTCAAGAACCTGGAGAAGTTCTACTTGACCGGCAAGTTGGCA
GAAGGGAAGCTTTTTCCAGTATCTAATGGTTTTCAGAAACTTAAGGTCCTAACAATGCGC
TGGTCTAAGCTAACACACGACCCCCTAAGTTCCTTATGTCAAATGGAAAATCTCGTCTAC
CTTAATCTTTACTGTGCATACGATGGGGAATGCTTGATCTTCTCTTCTGGGTGGTTTCCA
AAGCTCAAGCAACTCTACCTAGGCAAGCTTGAGAGACTGAGGTCAATTCAAATAAGTGAT
GGCGCCATTGAAAATTTAACATACCTGGAACTTCATGAGCTGTGGAATCTAAAAAGTGTC
CCTGAAGGCCTTGTATACCTTAGGTCTCTTCAGCACTTGTATGCACGAAAGATGCCTGCA
GATTTCGTGGAGGAACTGGAGGGAAGTTGCCAGGGCTTTGTTCGGCACATTGCCAACATT
GAATGTATGTGA