Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d023892_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:10:26542390:26547193:1 gene:Zm00001d023892 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:shikimate dehydrogenase1 description: shikimate dehydrogenase1
Sequence	ATGGCGACGGCGATGTCAGTTTCGGCGGTGTCCCCGCCCGCCGCGGCGGTCACGCGGCCG CGGACGATGGTCTGCGTGCCGGCGACGGCGCGGGCGCCGCGGGAGATGGCGGCGGAGCTG GCCGCCGCCGCCGCGCTCGGCGCTGACGTGGCGGAGCTTCGCCTCGACTGCCTCGCCGGG TTCGCGCCGCGCAGGGACCTGCCCGTCATCCTCGCCAAGCCCCGCCCGCTCCCCGCCCTC GTCACCTACAGGCCCAAGTGGGAAGGAGGCGAATACGAAGGCGATGACGAATCACGGTTT GAGGCTCTGCTATTGGCAATGGAGCTGGGAGCTGAATATGTGGATGTCGAGCTTAAGGTG GCTGACAAATTTATGAAACTTATTTCTGGGAGGAAACCTGATAACTGTAAACTTATAGTT TCATCCCACAACTATGAGACCACTCCATCGTCCGAGGAACTTGCAAATTTGGTGGCTCAG ATTCAAGCAACGGGGGCTGATATCGTGAAAATAGCTACAACCGCTACTGAAATTGTTGAT GTGGCAAAAATGTTTCAAATACTTGTTCACTGCCAGGAAAAGCAGGTGCCAATCATTGGG CTGGTGATGAACGACAGAGGTTTTATTTCTCGGGTTCTTTGCCCAAAATATGGTGGATTC CTTACTTTTGGGTCACTCAAGAAAGGAAAAGAGTCTGCACCTGCACAGCCAACTGCTGCA GACTTGATAAATCTGTACAATATTAGGCAGATAGGGCCAGACACTAAGGTCTTTGGTATA ATTGGTAAACCAGTTGGCCATAGCAAAAGCCCAATTTTGCATAATGAAGCTTTCAGATCT GTGGGTTTCAACGCTGTGTATGTGCCATTTTTGGTGGATGACTTGGCTAAATTTCTTGAT ACATACTCTTCACCAGACTTTGCTGGCTTCAGTTGCACAATTCCACACAAAGAAGCTGCT GTTAGGTGCTGTGACGAGGTCGATCCCGTTGCCAGGGACATTGGAGCTGTTAACACAATT GTTAGAAGACCTGATGGAAAGCTTGTTGGCTATAATACTGACTATGTTGGTGCTATATCT GCTATTGAGGATGGAATAAAAGCATCAGAATCAGAACCAACAGATCCAGACAAATCACCA CTGGCTGGAAGGCTTTTTGTTGTTATAGGGGCTGGTGGTGCGGGAAAAGCACTAGCATAT GGGGCAAAAGAGAAAGGAGCAAGAGTTGTAATTGCAAACCGTACCTTTGCACGAGCACAA GAACTTGCCAACTTAATTGGTGGGCCTGCATTGACTCTTGCGGATTTGGAAAACTACCAT CCAGAGGAAGGGATGATTCTTGCAAATACAACAGCCATTGGAATGCATCCAAATGTGAAT GAAACTCCTCTATCTAAGCAAGCACTCAGATCTTATGCTGTTGTGTTTGATGCGGTCTAC ACACCAAAAGAGACCAGACTTCTCCGAGAAGCTGCAGAATGTGGAGCCACAGTTGTTAGT GGTCTGGAGATGTTTATACGCCAAGCTATGGGCCAGTTTGAGCATTTCACGGGCATGCCA GTGGACGATTACAAATTCCGAGCAATTGCAAGTTCATTGGACAATCCTAACACCATGAAG CCTCGTCTGTGA

Peptide Sequence

PEP ID	Zm00001d023892_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:10:26542390:26547193:1 gene:Zm00001d023892 transcript:Zm00001d023892_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:shikimate dehydrogenase1 description: shikimate dehydrogenase1
Sequence	MATAMSVSAVSPPAAAVTRPRTMVCVPATARAPREMAAELAAAAALGADVAELRLDCLAG FAPRRDLPVILAKPRPLPALVTYRPKWEGGEYEGDDESRFEALLLAMELGAEYVDVELKV ADKFMKLISGRKPDNCKLIVSSHNYETTPSSEELANLVAQIQATGADIVKIATTATEIVD VAKMFQILVHCQEKQVPIIGLVMNDRGFISRVLCPKYGGFLTFGSLKKGKESAPAQPTAA DLINLYNIRQIGPDTKVFGIIGKPVGHSKSPILHNEAFRSVGFNAVYVPFLVDDLAKFLD TYSSPDFAGFSCTIPHKEAAVRCCDEVDPVARDIGAVNTIVRRPDGKLVGYNTDYVGAIS AIEDGIKASESEPTDPDKSPLAGRLFVVIGAGGAGKALAYGAKEKGARVVIANRTFARAQ ELANLIGGPALTLADLENYHPEEGMILANTTAIGMHPNVNETPLSKQALRSYAVVFDAVY TPKETRLLREAAECGATVVSGLEMFIRQAMGQFEHFTGMPVDDYKFRAIASSLDNPNTMK PRL

Transcript Sequence

Transcript ID	Zm00001d023892_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:10:26542390:26547193:1 gene:Zm00001d023892 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:shikimate dehydrogenase1 description: shikimate dehydrogenase1
Sequence	ACCAACCCGACGCAAAGCCGCCGGCTTTCCCCGATGGCGACGGCGATGTCAGTTTCGGCG GTGTCCCCGCCCGCCGCGGCGGTCACGCGGCCGCGGACGATGGTCTGCGTGCCGGCGACG GCGCGGGCGCCGCGGGAGATGGCGGCGGAGCTGGCCGCCGCCGCCGCGCTCGGCGCTGAC GTGGCGGAGCTTCGCCTCGACTGCCTCGCCGGGTTCGCGCCGCGCAGGGACCTGCCCGTC ATCCTCGCCAAGCCCCGCCCGCTCCCCGCCCTCGTCACCTACAGGCCCAAGTGGGAAGGA GGCGAATACGAAGGCGATGACGAATCACGGTTTGAGGCTCTGCTATTGGCAATGGAGCTG GGAGCTGAATATGTGGATGTCGAGCTTAAGGTGGCTGACAAATTTATGAAACTTATTTCT GGGAGGAAACCTGATAACTGTAAACTTATAGTTTCATCCCACAACTATGAGACCACTCCA TCGTCCGAGGAACTTGCAAATTTGGTGGCTCAGATTCAAGCAACGGGGGCTGATATCGTG AAAATAGCTACAACCGCTACTGAAATTGTTGATGTGGCAAAAATGTTTCAAATACTTGTT CACTGCCAGGAAAAGCAGGTGCCAATCATTGGGCTGGTGATGAACGACAGAGGTTTTATT TCTCGGGTTCTTTGCCCAAAATATGGTGGATTCCTTACTTTTGGGTCACTCAAGAAAGGA AAAGAGTCTGCACCTGCACAGCCAACTGCTGCAGACTTGATAAATCTGTACAATATTAGG CAGATAGGGCCAGACACTAAGGTCTTTGGTATAATTGGTAAACCAGTTGGCCATAGCAAA AGCCCAATTTTGCATAATGAAGCTTTCAGATCTGTGGGTTTCAACGCTGTGTATGTGCCA TTTTTGGTGGATGACTTGGCTAAATTTCTTGATACATACTCTTCACCAGACTTTGCTGGC TTCAGTTGCACAATTCCACACAAAGAAGCTGCTGTTAGGTGCTGTGACGAGGTCGATCCC GTTGCCAGGGACATTGGAGCTGTTAACACAATTGTTAGAAGACCTGATGGAAAGCTTGTT GGCTATAATACTGACTATGTTGGTGCTATATCTGCTATTGAGGATGGAATAAAAGCATCA GAATCAGAACCAACAGATCCAGACAAATCACCACTGGCTGGAAGGCTTTTTGTTGTTATA GGGGCTGGTGGTGCGGGAAAAGCACTAGCATATGGGGCAAAAGAGAAAGGAGCAAGAGTT GTAATTGCAAACCGTACCTTTGCACGAGCACAAGAACTTGCCAACTTAATTGGTGGGCCT GCATTGACTCTTGCGGATTTGGAAAACTACCATCCAGAGGAAGGGATGATTCTTGCAAAT ACAACAGCCATTGGAATGCATCCAAATGTGAATGAAACTCCTCTATCTAAGCAAGCACTC AGATCTTATGCTGTTGTGTTTGATGCGGTCTACACACCAAAAGAGACCAGACTTCTCCGA GAAGCTGCAGAATGTGGAGCCACAGTTGTTAGTGGTCTGGAGATGTTTATACGCCAAGCT ATGGGCCAGTTTGAGCATTTCACGGGCATGCCAGTGGACGATTACAAATTCCGAGCAATT GCAAGTTCATTGGACAATCCTAACACCATGAAGCCTCGTCTGTGAGAGATTCATCCATGC CCACAAACTTCCTTGTTTTTCCTTTTTAGATTCGGATTCAGTGATCAGTTTGCCTCTCAG CCATTGTAAATTAATTTGATGTTCCGAGCTGAAACATTTTGGTGTGCCTTATTTGTATCA GCATGAACAGCAGTCATCGTGGGTTTGAATCAGTCTCTTAGCATTTGCGTTCCAAGA