Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d023885_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:10:26305533:26307972:-1 gene:Zm00001d023885 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RTF1 homolog
Sequence

ATGTCTGAGTTGCAAAGGGAGTTGATCCTAGCTGAGCGGGGCACCCGCCTCGACGACTAC
AAGCTCAAGCAGCGGGCACGTGCGTCCTCCTCCAAGACGGACAAGGTGGGTGCGCCAAAG
GATAGCAGCCCACCCCCACCGCCTAGCCGGATGCGGTCTTCTACCCGAACTGACAAGTCT
GGGTCCGCCGCTAAGAGCGCGCTGGACGAGCTGCGGGCAAAGCAGCGGATGCGGCAACAA
GCTCCGGAGGCACGCAGGATCACGGACCTACTCCCACATAGTGGCTCATCCATTAGGCGC
AGGGCTGGGAGCCCACCAAGTGATGGGAGCAACGATGGCAATAACAGGGGGAGGATGAAT
GACCATGGGAGGATTGCTGGTGATGGCAGGGATGATGAATTTGATGAATCGCCGAGTAGG
CTTGATCCACTCAAGTTTGATGATGTGAAGAGTATTACCCTCAGGAGGTCAAAACTGGTG
AAATGGTTCATGGAGCCATTCTTTGATGATCTAATTTCTGGTTGTTTTGTGCGGCTAGGT
ATTGGTAAGACAAAGAATGGGACCCCCAGTTACAGGCTGTGCATAGTGAGGAACGTGGAT
GCAAGCGATCCAGATCGGAATTACAAACTGGAAAACTACTCGACATGCAAATATCTCAAT
GTTGTGTGGGATAGTGAGGCTAATGCTGCTCGGTGGCAGATGACTCAGGTATCGGACTCC
CCACCCAACGAAGAAGAGTTCAAGGACTGGCTGCAAGCGGCAGAGAAGAATGGTGCACGC
ATACCGACTCGGCAGGAAGTCCTGGATAAGAAAGAAGCCATTCAGAATGCCTATAACTTT
GTGTATTCAGCAGCAACTGTACAACAGATGCTGCAAGAGAAATCAGCTGTGAGACGACCT
ATCAATATTGCTGCTGAGAAGGATCGGTTGAGGAGTGAATTGGAGATGGCTCTTAGCCGT
AGGAACGAACATGAAGCTGAGAGGATTCGTACGAAGCTGAAAAATCTGCAAAACAGGGCA
CAACCAGTGTCAAAAGATAATAAGGCTGCAAAGTTGGAGGCTATGAACCGGAAGAACCGC
GCTGATAACTTCAAGAACGCTTCAGAACTGAAACCTGTAAATACATCTTTGAAGGCAGGA
GAAGCTGGTTATGACCCTTTCTCGAGGAGGTGGACAAGGTCAAGAAATTATTATGCATCG
AAGCCAGGAGGAAATAATGTTGAAGAAACTGCCAATGGGTCCAGTAGTAATGTAGCGCCT
AGCAATGAAGATACAAAGAGCAAGGCTCAAACTGGTACAGCAGCCACAACAGCAGCTCAA
GTGGCAGCAGCTGATGCCGGGAAGCTCATTGATACCAATGCACCAGTGGATCTGGGAACA
GAATCAAATATGCTGCATACATTTGAGCTTCCTATATCATTGTCTGCTCTGCAAGAATTT
GGTGGAGCCAAGGGCCTGTTTGATGGTTACATGGCAAGGAGGCAGAAGATAGAAGCTACA
ATGGGGTACAAAGTGCCTGACAACGATGGAAGGAGGCATGCTTTAACCCTGAGTGTGAGT
GATTACAAAAGGCGACGGGGTCTCCTCTGA

Peptide Sequence

PEP ID

Zm00001d023885_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:10:26305533:26307972:-1 gene:Zm00001d023885 transcript:Zm00001d023885_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RTF1 homolog
Sequence

MSELQRELILAERGTRLDDYKLKQRARASSSKTDKVGAPKDSSPPPPPSRMRSSTRTDKS
GSAAKSALDELRAKQRMRQQAPEARRITDLLPHSGSSIRRRAGSPPSDGSNDGNNRGRMN
DHGRIAGDGRDDEFDESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFDDLISGCFVRLG
IGKTKNGTPSYRLCIVRNVDASDPDRNYKLENYSTCKYLNVVWDSEANAARWQMTQVSDS
PPNEEEFKDWLQAAEKNGARIPTRQEVLDKKEAIQNAYNFVYSAATVQQMLQEKSAVRRP
INIAAEKDRLRSELEMALSRRNEHEAERIRTKLKNLQNRAQPVSKDNKAAKLEAMNRKNR
ADNFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYASKPGGNNVEETANGSSSNVAP
SNEDTKSKAQTGTAATTAAQVAAADAGKLIDTNAPVDLGTESNMLHTFELPISLSALQEF
GGAKGLFDGYMARRQKIEATMGYKVPDNDGRRHALTLSVSDYKRRRGLL

Transcript Sequence

Transcript ID

Zm00001d023885_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:26305533:26307972:-1 gene:Zm00001d023885 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RTF1 homolog
Sequence

AGCGCATCCTTCTCCTCTTCTGTCCAGGCGGCGTCTCTGTCGATCAATTGTGCGCCGCCT
TCGCCTGCATAGCCCGGAGAGAGCCGTCATCCTTACCTGCGCCGACCGACGCCTCTGCAG
CTTCTCCAGGTACCGCTCAAGAAGCGGCACAAGCCGGAGAAGGGCGGCCGGCGTGGCGGT
GGTGGGTGGAACGACGAGGATGATGAGGACGAGGATGGGCGTCGGAGTGGCGGGGAGGAC
TCGGACAGCGCCCCTTCAGTGGGGAGTGACCTATACAAGGATGAAGACGACAAGGAGCGT
CTGGAGAACATGTCTGAGTTGCAAAGGGAGTTGATCCTAGCTGAGCGGGGCACCCGCCTC
GACGACTACAAGCTCAAGCAGCGGGCACGTGCGTCCTCCTCCAAGACGGACAAGGTGGGT
GCGCCAAAGGATAGCAGCCCACCCCCACCGCCTAGCCGGATGCGGTCTTCTACCCGAACT
GACAAGTCTGGGTCCGCCGCTAAGAGCGCGCTGGACGAGCTGCGGGCAAAGCAGCGGATG
CGGCAACAAGCTCCGGAGGCACGCAGGATCACGGACCTACTCCCACATAGTGGCTCATCC
ATTAGGCGCAGGGCTGGGAGCCCACCAAGTGATGGGAGCAACGATGGCAATAACAGGGGG
AGGATGAATGACCATGGGAGGATTGCTGGTGATGGCAGGGATGATGAATTTGATGAATCG
CCGAGTAGGCTTGATCCACTCAAGTTTGATGATGTGAAGAGTATTACCCTCAGGAGGTCA
AAACTGGTGAAATGGTTCATGGAGCCATTCTTTGATGATCTAATTTCTGGTTGTTTTGTG
CGGCTAGGTATTGGTAAGACAAAGAATGGGACCCCCAGTTACAGGCTGTGCATAGTGAGG
AACGTGGATGCAAGCGATCCAGATCGGAATTACAAACTGGAAAACTACTCGACATGCAAA
TATCTCAATGTTGTGTGGGATAGTGAGGCTAATGCTGCTCGGTGGCAGATGACTCAGGTA
TCGGACTCCCCACCCAACGAAGAAGAGTTCAAGGACTGGCTGCAAGCGGCAGAGAAGAAT
GGTGCACGCATACCGACTCGGCAGGAAGTCCTGGATAAGAAAGAAGCCATTCAGAATGCC
TATAACTTTGTGTATTCAGCAGCAACTGTACAACAGATGCTGCAAGAGAAATCAGCTGTG
AGACGACCTATCAATATTGCTGCTGAGAAGGATCGGTTGAGGAGTGAATTGGAGATGGCT
CTTAGCCGTAGGAACGAACATGAAGCTGAGAGGATTCGTACGAAGCTGAAAAATCTGCAA
AACAGGGCACAACCAGTGTCAAAAGATAATAAGGCTGCAAAGTTGGAGGCTATGAACCGG
AAGAACCGCGCTGATAACTTCAAGAACGCTTCAGAACTGAAACCTGTAAATACATCTTTG
AAGGCAGGAGAAGCTGGTTATGACCCTTTCTCGAGGAGGTGGACAAGGTCAAGAAATTAT
TATGCATCGAAGCCAGGAGGAAATAATGTTGAAGAAACTGCCAATGGGTCCAGTAGTAAT
GTAGCGCCTAGCAATGAAGATACAAAGAGCAAGGCTCAAACTGGTACAGCAGCCACAACA
GCAGCTCAAGTGGCAGCAGCTGATGCCGGGAAGCTCATTGATACCAATGCACCAGTGGAT
CTGGGAACAGAATCAAATATGCTGCATACATTTGAGCTTCCTATATCATTGTCTGCTCTG
CAAGAATTTGGTGGAGCCAAGGGCCTGTTTGATGGTTACATGGCAAGGAGGCAGAAGATA
GAAGCTACAATGGGGTACAAAGTGCCTGACAACGATGGAAGGAGGCATGCTTTAACCCTG
AGTGTGAGTGATTACAAAAGGCGACGGGGTCTCCTCTGAAGTGTATCTGTGATTGTGCTG
GGTGCTCAGCGGATTCAAATATCTGCCTGGCTTCAGCGCCTCTGCATTGCTGTGACAATT
GTCCAGATCATCTGCATTTTGCCTTATCTTCCTATAAGTAACATAAAACATGCGATAAAA
CATGCGGAGTATACAATTTCTTTCATAAATATTACCTGATG