Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d023579_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:10:10649401:10652209:1 gene:Zm00001d023579 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aspartyl protease APCB1
Sequence

ATGGCACCACCGCCCGCGGGCCTCGTGCTCGTGGCTCTGCTCGCGCTGGTCCTGGCGCTG
GCGCTGGCGCCGGCGCCGGCGCGCGGGGACAAGCCGGCGAGGGGCGGGGCGTCCAGCTCC
ATCGCCGCCGGGGCGGAGACGGAGCCGTCCTCCGCCGTCTTCCCGCTCTACGGCGACGTC
TACCCGCACGGGTTGTACTACGTGGCTATGAACATCGGCAACCCACCCAAGCCATACTTC
CTGGACGTGGACTCCGGCAGCGACCTCACCTGGCTGCAGTGCGACGCGCCCTGCAGGAGC
TGCAACGAGGTGCCGCACCCGCTGTACCGGCCAACAAAGAGCAAGCTGGTGCCATGCGTG
CACCGGCTGTGCGCTTCCCTGCACAACGGGCTGACCGGGAAGCACAGATGCGACTCGCCG
CACGAGCAATGCGACTACGTGATCAAGTACGCAGACCAGGGGTCGTCCACCGGCGTGCTC
ATCAACGACAGCTTCGCGCTCCGCCTCACCAACGGCTCTGTCGCTCGCCCCAGCGTCGCC
TTCGGGTGTGGTTACGACCAGCAGGTCCGCAGCGGCGACCTGAGTTCGCCTACCGACGGC
GTGCTGGGGCTCGGGACCGGCTCAGTCAGCTTGCTCTCGCAGCTCAAACAGCGTGGCGTC
ACCAAGAACGTGGTCGGCCACTGCCTCAGCCTGAGGGGCGGCGGGTTCCTCTTCTTCGGT
GACGATCTCGTGCCTTACCAACGCGCGACATGGACTCCCATGGCTCGCAGCGCGTTCCGG
AACTACTACTCCCCTGGCTCTGCAAGCCTGTACTTCGGCGACCGGTCACTGGGCGTGAGA
CTGGCGAAAGTGGTCTTCGACAGTGGAAGCTCGTTCACCTACTTCGCTGCAAAGCCATAC
CAAGCACTTGTCACCGCTCTTAAGGATGGCCTGAGCAGGACGCTGGAAGAGGAACCCGAC
ACTTCGCTGCCTCTCTGCTGGAAAGGGCAGGAACCATTCAAGTCTGTGCTTGATGTGAGG
AAGGAGTTCAAGTCTTTGGTGCTCAACTTCGCCAGTGGCAAGAAGACGCTCATGGAGATC
CCTCCTGAGAACTACCTCATTGTCACAGAAAACGGGAATGCCTGTCTGGGCATCCTCAAC
GGATCCGAAATCGGTCTCAAGGACCTGAGCATTATTGGAGACATTACGATGCAGGATCAC
ATGGTGATATATGACAATGAGAAAGGGAAAATTGGATGGATTCGTGCACCCTGTGACAGA
GCCCCCAACGACATAAATACGGTTCATGGGTTTGAGGAAGGTTACTGTTGGCCTCAATTC
CTCCCGGGGATCATTGGTCTTCCCAACGAAGATTGCCCAGCCTATTACCGTTCAAACAAA
GAGCGATTTGCCAAGGCCCAAGGGGGAGGCCGCTAG

Peptide Sequence

PEP ID

Zm00001d023579_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:10:10649401:10652209:1 gene:Zm00001d023579 transcript:Zm00001d023579_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aspartyl protease APCB1
Sequence

MAPPPAGLVLVALLALVLALALAPAPARGDKPARGGASSSIAAGAETEPSSAVFPLYGDV
YPHGLYYVAMNIGNPPKPYFLDVDSGSDLTWLQCDAPCRSCNEVPHPLYRPTKSKLVPCV
HRLCASLHNGLTGKHRCDSPHEQCDYVIKYADQGSSTGVLINDSFALRLTNGSVARPSVA
FGCGYDQQVRSGDLSSPTDGVLGLGTGSVSLLSQLKQRGVTKNVVGHCLSLRGGGFLFFG
DDLVPYQRATWTPMARSAFRNYYSPGSASLYFGDRSLGVRLAKVVFDSGSSFTYFAAKPY
QALVTALKDGLSRTLEEEPDTSLPLCWKGQEPFKSVLDVRKEFKSLVLNFASGKKTLMEI
PPENYLIVTENGNACLGILNGSEIGLKDLSIIGDITMQDHMVIYDNEKGKIGWIRAPCDR
APNDINTVHGFEEGYCWPQFLPGIIGLPNEDCPAYYRSNKERFAKAQGGGR

Transcript Sequence

Transcript ID

Zm00001d023579_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:10649401:10652209:1 gene:Zm00001d023579 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aspartyl protease APCB1
Sequence

ACCACCAAGAAAAATAAATTCAGAGAAAGGAGGAAGGGAGACTGGGAGAAACAGACAGGA
AGGAGCCCATCCGCGTCTGCCTCCACCCCTCGGCTCCCAGAGTCCCCGCTAGCCAAGCCC
CCACATGGCACCACCGCCCGCGGGCCTCGTGCTCGTGGCTCTGCTCGCGCTGGTCCTGGC
GCTGGCGCTGGCGCCGGCGCCGGCGCGCGGGGACAAGCCGGCGAGGGGCGGGGCGTCCAG
CTCCATCGCCGCCGGGGCGGAGACGGAGCCGTCCTCCGCCGTCTTCCCGCTCTACGGCGA
CGTCTACCCGCACGGGTTGTACTACGTGGCTATGAACATCGGCAACCCACCCAAGCCATA
CTTCCTGGACGTGGACTCCGGCAGCGACCTCACCTGGCTGCAGTGCGACGCGCCCTGCAG
GAGCTGCAACGAGGTGCCGCACCCGCTGTACCGGCCAACAAAGAGCAAGCTGGTGCCATG
CGTGCACCGGCTGTGCGCTTCCCTGCACAACGGGCTGACCGGGAAGCACAGATGCGACTC
GCCGCACGAGCAATGCGACTACGTGATCAAGTACGCAGACCAGGGGTCGTCCACCGGCGT
GCTCATCAACGACAGCTTCGCGCTCCGCCTCACCAACGGCTCTGTCGCTCGCCCCAGCGT
CGCCTTCGGGTGTGGTTACGACCAGCAGGTCCGCAGCGGCGACCTGAGTTCGCCTACCGA
CGGCGTGCTGGGGCTCGGGACCGGCTCAGTCAGCTTGCTCTCGCAGCTCAAACAGCGTGG
CGTCACCAAGAACGTGGTCGGCCACTGCCTCAGCCTGAGGGGCGGCGGGTTCCTCTTCTT
CGGTGACGATCTCGTGCCTTACCAACGCGCGACATGGACTCCCATGGCTCGCAGCGCGTT
CCGGAACTACTACTCCCCTGGCTCTGCAAGCCTGTACTTCGGCGACCGGTCACTGGGCGT
GAGACTGGCGAAAGTGGTCTTCGACAGTGGAAGCTCGTTCACCTACTTCGCTGCAAAGCC
ATACCAAGCACTTGTCACCGCTCTTAAGGATGGCCTGAGCAGGACGCTGGAAGAGGAACC
CGACACTTCGCTGCCTCTCTGCTGGAAAGGGCAGGAACCATTCAAGTCTGTGCTTGATGT
GAGGAAGGAGTTCAAGTCTTTGGTGCTCAACTTCGCCAGTGGCAAGAAGACGCTCATGGA
GATCCCTCCTGAGAACTACCTCATTGTCACAGAAAACGGGAATGCCTGTCTGGGCATCCT
CAACGGATCCGAAATCGGTCTCAAGGACCTGAGCATTATTGGAGACATTACGATGCAGGA
TCACATGGTGATATATGACAATGAGAAAGGGAAAATTGGATGGATTCGTGCACCCTGTGA
CAGAGCCCCCAACGACATAAATACGGTTCATGGGTTTGAGGAAGGTTACTGTTGGCCTCA
ATTCCTCCCGGGGATCATTGGTCTTCCCAACGAAGATTGCCCAGCCTATTACCGTTCAAA
CAAAGAGCGATTTGCCAAGGCCCAAGGGGGAGGCCGCTAGAATGACAGAAACAGCAGAAG
GATGGTCACGGAGGCTGGTGTGTGTTCTTTAGGAAAGGAGAGAAACTAGCCCATGTAAAC
ATCATAATGTTCATATGAAATATAACGATGATCACCCTGTTACGAGTACAATCTTTTCGG
ACCTTTTCTGTGTACATTCTTTACTTGGTTTTCTTTCTGTTGATGTGATATATACTCGGT
TCCAGGTGTCTCGCGACTATG