Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d023507_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:10:7855779:7859481:1 gene:Zm00001d023507 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:bZIP-transcription factor 10 description:Transcription factor VIP1
Sequence

ATGGACCCGCGCTTTCCGCTGCCGGCCGCGGCGGCGCCGTCCACGGGCGGCGGCGGCGGC
GCCAGAGGGCACCACCGGCGGGCCCACTCGGAGACGTTCCTCAGCTTCCACGACGCGGAC
CTGCTCCTCGACCCGGACGGCGACTTCTTCTCCGACCTCGACTTCCCCTCCCTCTCCGAC
GACTCTCCGGCCGCCTCCGACCCCACCCCGCCGCCGCATCCGCAGCAGCAGCCGCCGCAG
GCTTCCCCGGCCCCACGTCCGCCCGGCGGGACCCACACGCGGAGCCTCTCCCTCGACGCC
GCCTTCTTCGAGGGCCTCGCGTTTCAGGGACCCAGTGGGAGCGCCGGGGGTGGAGGTGGG
CCCGGCCACAAGAGGAGCGGCTCGATGGATGGGGACACCTCGCCGTTCGAGGGCGAGTCG
GCGCTCTCCAGCGGCCTGCCGGACTACGCCAAGAAGGCCATGCCCGCCGAGAGGATCGCC
GAGCTCGCGCTCATCGACCCCAAGCGCGCAAAGAGGATTCTGGCGAACAGGCAGTCGGCA
GCGAGGTCAAAGGAGAGGAAGATCATGTACACTAGTGAACTGGAGAAGAAGGTCCAGACT
CTGCAAACGGAGGCCACTACGCTGTCAGCACAGCTGACCCTGCTCCAGAGGGATACAACT
GGTTTAACTGCCGAAAACAGAGAGCTCAAGCTTCGGTTGCAGTCCATGGAAGAGCAAGCT
AAACTGCGGGACGCTTTGAATGAAGCCCTGCGAGAAGAAGTCCAGCGACTTAAGATAGCC
GCAGGACAAGTCGGGAACATGAATGGGAACCCCTTCAATGGTGGACTCCAGCAGCAGATT
CCATCCTATTTCGTGCAGCAGCAGCAGCAGCAGCAGACACCGTACTTTGGTGGCCACCAG
GCTCAGCTTCACAATCAAAATCAAAACCATCGTCACCAGATCTCGTCAAATGTTGGGCAG
ACGCTCAGTGGTCAGTCCCTAAACGACTCCATGGATTTCATGTGA

Peptide Sequence

PEP ID

Zm00001d023507_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:10:7855779:7859481:1 gene:Zm00001d023507 transcript:Zm00001d023507_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:bZIP-transcription factor 10 description:Transcription factor VIP1
Sequence

MDPRFPLPAAAAPSTGGGGGARGHHRRAHSETFLSFHDADLLLDPDGDFFSDLDFPSLSD
DSPAASDPTPPPHPQQQPPQASPAPRPPGGTHTRSLSLDAAFFEGLAFQGPSGSAGGGGG
PGHKRSGSMDGDTSPFEGESALSSGLPDYAKKAMPAERIAELALIDPKRAKRILANRQSA
ARSKERKIMYTSELEKKVQTLQTEATTLSAQLTLLQRDTTGLTAENRELKLRLQSMEEQA
KLRDALNEALREEVQRLKIAAGQVGNMNGNPFNGGLQQQIPSYFVQQQQQQQTPYFGGHQ
AQLHNQNQNHRHQISSNVGQTLSGQSLNDSMDFM

Transcript Sequence

Transcript ID

Zm00001d023507_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:7855779:7859481:1 gene:Zm00001d023507 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:bZIP-transcription factor 10 description:Transcription factor VIP1
Sequence

ATGTATGACACGCACCACCCGCACCGCACCCACCCACCAACCCGACCTTCCGCTGCTCAC
ACACACACACACACACACACACACACTCTACACGCCGGCCGCCGCCGCCGCGACCTGGAG
CTTGCGAGCTAGCTCTGGCCTCGCTGCCTGCGCCGACTGAGATGGACCCGCGCTTTCCGC
TGCCGGCCGCGGCGGCGCCGTCCACGGGCGGCGGCGGCGGCGCCAGAGGGCACCACCGGC
GGGCCCACTCGGAGACGTTCCTCAGCTTCCACGACGCGGACCTGCTCCTCGACCCGGACG
GCGACTTCTTCTCCGACCTCGACTTCCCCTCCCTCTCCGACGACTCTCCGGCCGCCTCCG
ACCCCACCCCGCCGCCGCATCCGCAGCAGCAGCCGCCGCAGGCTTCCCCGGCCCCACGTC
CGCCCGGCGGGACCCACACGCGGAGCCTCTCCCTCGACGCCGCCTTCTTCGAGGGCCTCG
CGTTTCAGGGACCCAGTGGGAGCGCCGGGGGTGGAGGTGGGCCCGGCCACAAGAGGAGCG
GCTCGATGGATGGGGACACCTCGCCGTTCGAGGGCGAGTCGGCGCTCTCCAGCGGCCTGC
CGGACTACGCCAAGAAGGCCATGCCCGCCGAGAGGATCGCCGAGCTCGCGCTCATCGACC
CCAAGCGCGCAAAGAGGATTCTGGCGAACAGGCAGTCGGCAGCGAGGTCAAAGGAGAGGA
AGATCATGTACACTAGTGAACTGGAGAAGAAGGTCCAGACTCTGCAAACGGAGGCCACTA
CGCTGTCAGCACAGCTGACCCTGCTCCAGAGGGATACAACTGGTTTAACTGCCGAAAACA
GAGAGCTCAAGCTTCGGTTGCAGTCCATGGAAGAGCAAGCTAAACTGCGGGACGCTTTGA
ATGAAGCCCTGCGAGAAGAAGTCCAGCGACTTAAGATAGCCGCAGGACAAGTCGGGAACA
TGAATGGGAACCCCTTCAATGGTGGACTCCAGCAGCAGATTCCATCCTATTTCGTGCAGC
AGCAGCAGCAGCAGCAGACACCGTACTTTGGTGGCCACCAGGCTCAGCTTCACAATCAAA
ATCAAAACCATCGTCACCAGATCTCGTCAAATGTTGGGCAGACGCTCAGTGGTCAGTCCC
TAAACGACTCCATGGATTTCATGTGAGGAGTACAATATCAGGGCCAGTATTACATCGTAT
ACCGACTGCAGTTCAGCACTGTAAAAAAGATAGCTAATGTACAATGTATGCATGTGCCTC
ATTGGTAGTGTGTAGTTAGCTCTTCTTTGTATCATTATTCTGAAAATGGCTCGTGTATGT
CAAAATGATGTCTCTTTTCTTCTTTGCTGGTTTCTGGAGTAATGTGTTAGACTGACTAGC
TACCTTTAACAATTTATGTAAATCTTTAGCTTTTTTTTTAATGGTGGAAGGTTCTTATAC
ATACATACATACCTGTTAAC