Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d023499_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:10:7374331:7379254:1 gene:Zm00001d023499 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein LINE-1
Sequence	ATGGCGTCGTCGTTCAAGCCGCACGCCGCACCGAAGAGGCGCGCCCTCGCCACGTTCAAC ATCGGGGCTCTGCCCCTGGACCTCCTCGTGTACGAGATTCTGCTGCGCCTCCCCGCCAAG CTCCTCTGCCGACTGCGCACGGTGTGCCGGTTGTGGCGGTCCATCCTCTCTGACCCGCAC TTCGCCGCGGCCCACGCCATGCGGCACCCGGGGCCGCTCATCATCGCCGCCATCGATGAG AGACCCGACGTGCACGTCAACATCATGGATCTGTCAGGGCAAATCTTAAAGCAGGTGCGC GGCGTGCCGGGTCAGAGAGTCGTGAGCACGGCCCTTGACCTCGTCTTTGTCAAGAAAACC GATAGCAGCAGCAGCAGCTACCGATTCTGCAACCCGTTTAGCGGAGACGTGCATTACTTA CCAGATCAATTGCTCAACCCAGCAACTGGAGCTGTGTATCAAATACCAAACAGCTTCGCC GAAGAACACATAGATTTCACATCGAGCTTTATTTCACAGTCCAGATATCTGTTTGGTCAG GTTAGCAGCACAGGGGAATACAAGGTGTTCCGGAAGCTTTACCATCTTTCCGTTCAGTTT GGAGGCAGGCAGCTGCTCGAGATCTGCACAGTCAACGGTAGCAACCACACAGGGTGGAGG GCAGTCACGCCCCTCGAAAAAAACATTCAGTTTGGTGTGTTCACCAGTGTGGTAATTAAT GGAATCATCTACTCCCAATGTTTTGATCCGCACCATTCTATCACTTATGATTGTCGAGCT ACTGAGGAAGACTTGATAATTACATTTGACATTGAGACTGAGAAATGGGGGCCATTTATG CGAGGACCCCCCATCAGCTTTTCTGATGCTGCTGCTCAGGTGTTCAATGACCTTCGGCTT CCACCTATAAAGCAGCTAACATTAGCCAATCTGAATGGCTCTTTAGCTGTTGTGCATGGC CCAGCTCCCAGTATGGACATTTGGATTCTGATGGACTCTGGTAAGGGTCTCTGGGTCAAA CAATACATCATACAGTTCAAAGAGTATGCCAGTTTTCAATATGTGCATCCATTGGTGGTA TTACGTGACGGAAGGGTGGTCCTATATAAAGAAGACATGCAGCTTTTACAGATCTATGAC CCAAGAACTAACACACTCACAGATTCCGTGGAGGTCTTGCAGGATCGCATCTATTGCTTC TTGTGCTCATCGCAGGGCTGTCTAGTATCAGTGGTGGCAATATCTTTAGCTATATTCTTT CTCTTTGTCTTGGCCTTGACCTTCACAGCTTTAGATGCTGGTGCTGCACCACTTGTGTGC TCTGTAGATGTTCAGGTTGATTTGAGCCTTCTTTGGATCTGTAAAAATGCATTCATTTTA GTTAAACTTCGAGAGTTATACCGTTTAGTACCAACAATTTATTGA

Peptide Sequence

PEP ID	Zm00001d023499_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:10:7374331:7379254:1 gene:Zm00001d023499 transcript:Zm00001d023499_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein LINE-1
Sequence	MASSFKPHAAPKRRALATFNIGALPLDLLVYEILLRLPAKLLCRLRTVCRLWRSILSDPH FAAAHAMRHPGPLIIAAIDERPDVHVNIMDLSGQILKQVRGVPGQRVVSTALDLVFVKKT DSSSSSYRFCNPFSGDVHYLPDQLLNPATGAVYQIPNSFAEEHIDFTSSFISQSRYLFGQ VSSTGEYKVFRKLYHLSVQFGGRQLLEICTVNGSNHTGWRAVTPLEKNIQFGVFTSVVIN GIIYSQCFDPHHSITYDCRATEEDLIITFDIETEKWGPFMRGPPISFSDAAAQVFNDLRL PPIKQLTLANLNGSLAVVHGPAPSMDIWILMDSGKGLWVKQYIIQFKEYASFQYVHPLVV LRDGRVVLYKEDMQLLQIYDPRTNTLTDSVEVLQDRIYCFLCSSQGCLVSVVAISLAIFF LFVLALTFTALDAGAAPLVCSVDVQVDLSLLWICKNAFILVKLRELYRLVPTIY

Transcript Sequence

Transcript ID	Zm00001d023499_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:10:7374331:7379254:1 gene:Zm00001d023499 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein LINE-1
Sequence	GATCGCGGAGATAACTTTTCTCCTCGATGTGCTTGCTCCTCACGAAGATCCCCTTTTCCT CCCTGTCCCAGCGATGGCGTCGTCGTTCAAGCCGCACGCCGCACCGAAGAGGCGCGCCCT CGCCACGTTCAACATCGGGGCTCTGCCCCTGGACCTCCTCGTGTACGAGATTCTGCTGCG CCTCCCCGCCAAGCTCCTCTGCCGACTGCGCACGGTGTGCCGGTTGTGGCGGTCCATCCT CTCTGACCCGCACTTCGCCGCGGCCCACGCCATGCGGCACCCGGGGCCGCTCATCATCGC CGCCATCGATGAGAGACCCGACGTGCACGTCAACATCATGGATCTGTCAGGGCAAATCTT AAAGCAGGTGCGCGGCGTGCCGGGTCAGAGAGTCGTGAGCACGGCCCTTGACCTCGTCTT TGTCAAGAAAACCGATAGCAGCAGCAGCAGCTACCGATTCTGCAACCCGTTTAGCGGAGA CGTGCATTACTTACCAGATCAATTGCTCAACCCAGCAACTGGAGCTGTGTATCAAATACC AAACAGCTTCGCCGAAGAACACATAGATTTCACATCGAGCTTTATTTCACAGTCCAGATA TCTGTTTGGTCAGGTTAGCAGCACAGGGGAATACAAGGTGTTCCGGAAGCTTTACCATCT TTCCGTTCAGTTTGGAGGCAGGCAGCTGCTCGAGATCTGCACAGTCAACGGTAGCAACCA CACAGGGTGGAGGGCAGTCACGCCCCTCGAAAAAAACATTCAGTTTGGTGTGTTCACCAG TGTGGTAATTAATGGAATCATCTACTCCCAATGTTTTGATCCGCACCATTCTATCACTTA TGATTGTCGAGCTACTGAGGAAGACTTGATAATTACATTTGACATTGAGACTGAGAAATG GGGGCCATTTATGCGAGGACCCCCCATCAGCTTTTCTGATGCTGCTGCTCAGGTGTTCAA TGACCTTCGGCTTCCACCTATAAAGCAGCTAACATTAGCCAATCTGAATGGCTCTTTAGC TGTTGTGCATGGCCCAGCTCCCAGTATGGACATTTGGATTCTGATGGACTCTGGTAAGGG TCTCTGGGTCAAACAATACATCATACAGTTCAAAGAGTATGCCAGTTTTCAATATGTGCA TCCATTGGTGGTATTACGTGACGGAAGGGTGGTCCTATATAAAGAAGACATGCAGCTTTT ACAGATCTATGACCCAAGAACTAACACACTCACAGATTCCGTGGAGGTCTTGCAGGATCG CATCTATTGCTTCTTGTGCTCATCGCAGGGCTGTCTAGTATCAGTGGTGGCAATATCTTT AGCTATATTCTTTCTCTTTGTCTTGGCCTTGACCTTCACAGCTTTAGATGCTGGTGCTGC ACCACTTGTGTGCTCTGTAGATGTTCAGGTTGATTTGAGCCTTCTTTGGATCTGTAAAAA TGCATTCATTTTAGTTAAACTTCGAGAGTTATACCGTTTAGTACCAACAATTTATTGATT TAAAACTGTGAGAAAATTAGATC