Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d023329_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:10:3504673:3508509:-1 gene:Zm00001d023329 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rust resistance protein Rp1-dp3
Sequence	ATGGCCGACTTGGCCCTCGCCGGCTTAAGGTGGACAGCATCGCCGATTGTCAACGAGCTT CTTACTAAAGCTTCAGCTTACCTCAGTGTGGACATGGTGCGTGAGATCCAACGACTAGAA GCCACTGTCCTGCCACAGTTCGAGCTGGTGATTCAAGCGGCCCAGAAGAGCCCCCACAGG GGCATACTGGAGGGATGGCTCCGGCGTCTCAAAGAAGCCTACTATGATGCCGAGGACTTG TTGGACGAGCATGAGTACAATGTCCTTGAGGGCAAGGCCAAGAGCGGAAAAAGTCTCCTG TTAGGAGAGCATGGAAGCTCCTCCACTGCAACTACTGTCATGAAGCCTTTTCATGCTGCT CTGAGCAGGGCGCGGAACTTGCTCCCTCAAAACAGAAGGCTACTTAGCAAGATGAACGAG CTCAAAGCAATCCTGACAGAAGCCCAACAACTTCGAGATCTTCTTGGTTTGCCACATGGC AATACCGTCGAGTGGCCAGCTGCAGCACCTACCAGTGTTCCCACAACCACATCACTTCCC ACTTCCAAGGTTTTTGGTCGCGACAGGGATCGTGATCATATAGTAGATTTTCTTCTCGAC AAGACAACAACTGCTCAGGCAAGCTCAGCTAAGTACTCGGGTTTGGCCATTGTTGGAGTA GGAGGAATGGGGAAGTCCACCTTAGCACAGTATGTCTACAACGACAAAAGGATAGAAGAA TGCTTCGATGTCAGGATGTGGGTGTGTATCTCACGCAAACTTGATGTCCATCGTCACACA AGGGAGATCATGGAGTCTGCAAAAAAGGGGGAGTGCCCACATGTTGATAATCTCGATACT CTCCAGTGCAAATTACGTGATATACTACAAGAGTCACATAAATTCCTGCTTGTCTTGGAT GATGTTTGGTTTGAAAAATCTGATACTGAGACAGAGTGGGAGCTACTCCTTGCTCCATTA GTCTCTAAACAGTCGGGGAGCAAGGTTTTGGTGACTACTCGATGTGAGACACTTCCGGCC GCTGTTTGCTGTGAACAAGTCGTTCATTTGAAAAACTTGGATGATACTGAGTTCTTGGCT CTCTTTAAACACCATGCTTTCTCTGGAGCAGAAATCAAAGACAAGCTCCTACACACGAAG TTGGAACACACTACAGAGGAGATTGCTAAAAGGCTTGGGCAATGTCCTTTGGCAGCAAAA GTTCTGGGTTCCCGATTGTGCAGGAAAAAGGATATTGCTGAATGGAAAGCTGCTCTAAAG CTTGGAGATTTAAGTGATCCCTTCACATCTCTGTTGTGGAGTTACGAGAAGTTAGATCCA CGTCTCCAGAGGTGCTTCTTGTATTGCAGCTTGTTTCCAAAAGGTCATAGATATGAACCT AATGAGTTGGTTCACCTCTGGGTGGCAGAAGGATTTGTTGGTTCATGCAATTTGAGTAGG AGAACATTGGAAGAGGCTGGGATGGATTACTTCAATGATATGGTCTCTGGATCTTTCTTC CAATTGGTTTCTAAAAGACATTATTCATACTATATCATGCATGATATCCTTCATGATTTG GCAGAGTCACTCTCTAGAGAAGACTGCTTTAGATTAGAAGATGATAATGTGACAGAGATA CCATGCACTGTTCGATATCTATCTGTCCGTGTTGAAAGTATGCAAAAGCATAAGGAAATT ATCTACAAGCTACATCATTTACGCACTGTTATCTGCATCGATTCACTAATGGATAATGCA AGTATTATTTTTGATCAGATGCTGTGGAACTTGAAGAAGTTACGCGTATTGTCTTTGTCA TTTTACAACAGCAACAAGTTACCTAAATCTGTTGGTGAGCTGAAGCACCTTCGGTATTTG GACCTCACCAGAACATCAGTGTTTGAATTGCCTAGATCATTATGTGCTCTTTGGCACTTA CAACTACTTCAGCTAAACGGCATGGTGGAGAGGTTGCCTAACAAAGTTTGCAATTTAAGT AAGTTACGGTATCTGCGAGGGTATAAGGACCAAATTCCCAACATTGGCAAGCTTACTTCT TTACAACAGATATATGTCTTTTCTGTGCAAAAGAAGCAAGGATATGAGTTGCGACAGCTA AAGGACTTGAATGAGCTTGGCGGCAGTTTACATGTACAAAATCTTGAGAATGTTATTGGA AAGGATGAAGCCTTAGCGTCGAAGCTATATCTGAAAAGTCGCCTTAAAGAGTTGACACTT GAGTGGAGTTCTGAGAATGGCATGGATGCAATGAATATTCTGCATTTGGATGTTCTAGAG GGTCTGCGACCGCCACCCCAACTGAGTAAGCTCACAATCAAAGGTTACAAATCTGACACA TATCCTGGGTGGTTACTTGAGCGATCCTATTTTAAGAATTTGGAACGTTTTGAGCTTAAT AATTGCAGTTTGCTAGAAGGCTTACCACCAGATACAGAGCTCCTTCAGCATTGTTCTAGA CTGTTGCTGTTGGACGTTCCAAAACTGAAGACATTACCATGTCTTCCACCAAGCCTTACA AAGTTGTCAATTTGTGGCCTCCCCCTGCTTACTTTTGTCACCAAAAATCAGCTCGAACAA CATGACTCTAGGGAAAATATAATGATGGCAAACCACCTGGCATCTAAACTTTCATTGATG TGGGAGGTGGATTCAGGATCTAGTGTTAGGAGTGTACTGTCGAAAGACTATTCATCTCTT AAGCAGTTGATGACATTGATGATAGATGATGATATATCAAAGCATCTTCAAATTATTGAA AGTGGTCTAGAGGAAGGAGATAAAGTATGGATGAAAGAAAACATCATCAAGGCATGGCTC TTTTGCCATGAGCAGAGGATAAGATTCACTTATGGAAGGGCCATGGAGCTGCAAGTGGTT CTACCATTAGGACTTTGTAAACTTTCCCTTTCGTCATGCAATATTATAGATGAAGCTTTA GCTATTTGCCTTGAAGGCCTCACTTCACTGGCAACTTTAGAATTGGAATATAATATGGCA CTAACTACACTTCCATCAGAAGAGGTGTTTCAACATTTGACAAACCTTGACATGTTGATT CTAAGTGGTTGTTGGTGTCTCAAGTCACTGGGGGGCTTACGTGTTGCTTCATCTCTTTCC ATTCTTCACTGTTGGGATTGTCCTTCTTTAGAGCTAGCACGTGGAGCAGAACTAATGCCG TTGAACCTTGCTAGCAATCTCAGCATCCGTGGCTGCATTCTTGCAGCTGATTCGTTCATT AATGGCTTGCCACATCTGAAACATCTTTCCATTGATGTCTGCAGAAGCTCCCCATCCTTG TCGATTGGCCACCTGACCTCCCTTGAATTATTAGATCTAAATGGTCTCCCTGATCTTTGC TTTGTTGAAGGCTTGTCTTCCCTGCACCTTAAGCACCTAAGTTTAGTAGATGTTGCAAAC CTCACTGCCAAGTGCATCTCACAGTTTCGTGTCCAGGAATCGCTCACGGTTAGTAGCTCT GTATTGCTCAACCACATGCTAATGGCTGAAGGGTTTACAGCCCCACCAAATCTTACTCTT TTAGATTGCAAGGAGCCATCATTTTCATTTGAAGAACCTGCAAATCTCTCATCTGTCAAG CGCCTGGATTTTTCGCTTTGCGAAATGGAGTCCCTGCCAAGAAATCTTAAATCTCTCTCA AGTCTAGAGAGTCTTCATATAGGGCGTTGCCCCAACGTAGCATCTTTACCTGATCTGCCA TCCTCCCTCCAGCGCATAGCTATATGGTGTTGTCCCGTCTTGAAGAAGAACTGCCAAGAA CCTGATGGGGAAAGCTGGCCAAAGATTTCGCACCTTCGCTGGAAGCACATCTACTAA

Peptide Sequence

PEP ID	Zm00001d023329_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:10:3504673:3508509:-1 gene:Zm00001d023329 transcript:Zm00001d023329_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rust resistance protein Rp1-dp3
Sequence	MADLALAGLRWTASPIVNELLTKASAYLSVDMVREIQRLEATVLPQFELVIQAAQKSPHR GILEGWLRRLKEAYYDAEDLLDEHEYNVLEGKAKSGKSLLLGEHGSSSTATTVMKPFHAA LSRARNLLPQNRRLLSKMNELKAILTEAQQLRDLLGLPHGNTVEWPAAAPTSVPTTTSLP TSKVFGRDRDRDHIVDFLLDKTTTAQASSAKYSGLAIVGVGGMGKSTLAQYVYNDKRIEE CFDVRMWVCISRKLDVHRHTREIMESAKKGECPHVDNLDTLQCKLRDILQESHKFLLVLD DVWFEKSDTETEWELLLAPLVSKQSGSKVLVTTRCETLPAAVCCEQVVHLKNLDDTEFLA LFKHHAFSGAEIKDKLLHTKLEHTTEEIAKRLGQCPLAAKVLGSRLCRKKDIAEWKAALK LGDLSDPFTSLLWSYEKLDPRLQRCFLYCSLFPKGHRYEPNELVHLWVAEGFVGSCNLSR RTLEEAGMDYFNDMVSGSFFQLVSKRHYSYYIMHDILHDLAESLSREDCFRLEDDNVTEI PCTVRYLSVRVESMQKHKEIIYKLHHLRTVICIDSLMDNASIIFDQMLWNLKKLRVLSLS FYNSNKLPKSVGELKHLRYLDLTRTSVFELPRSLCALWHLQLLQLNGMVERLPNKVCNLS KLRYLRGYKDQIPNIGKLTSLQQIYVFSVQKKQGYELRQLKDLNELGGSLHVQNLENVIG KDEALASKLYLKSRLKELTLEWSSENGMDAMNILHLDVLEGLRPPPQLSKLTIKGYKSDT YPGWLLERSYFKNLERFELNNCSLLEGLPPDTELLQHCSRLLLLDVPKLKTLPCLPPSLT KLSICGLPLLTFVTKNQLEQHDSRENIMMANHLASKLSLMWEVDSGSSVRSVLSKDYSSL KQLMTLMIDDDISKHLQIIESGLEEGDKVWMKENIIKAWLFCHEQRIRFTYGRAMELQVV LPLGLCKLSLSSCNIIDEALAICLEGLTSLATLELEYNMALTTLPSEEVFQHLTNLDMLI LSGCWCLKSLGGLRVASSLSILHCWDCPSLELARGAELMPLNLASNLSIRGCILAADSFI NGLPHLKHLSIDVCRSSPSLSIGHLTSLELLDLNGLPDLCFVEGLSSLHLKHLSLVDVAN LTAKCISQFRVQESLTVSSSVLLNHMLMAEGFTAPPNLTLLDCKEPSFSFEEPANLSSVK RLDFSLCEMESLPRNLKSLSSLESLHIGRCPNVASLPDLPSSLQRIAIWCCPVLKKNCQE PDGESWPKISHLRWKHIY

Transcript Sequence

Transcript ID	Zm00001d023329_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:10:3504673:3508509:-1 gene:Zm00001d023329 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rust resistance protein Rp1-dp3
Sequence	ATGGCCGACTTGGCCCTCGCCGGCTTAAGGTGGACAGCATCGCCGATTGTCAACGAGCTT CTTACTAAAGCTTCAGCTTACCTCAGTGTGGACATGGTGCGTGAGATCCAACGACTAGAA GCCACTGTCCTGCCACAGTTCGAGCTGGTGATTCAAGCGGCCCAGAAGAGCCCCCACAGG GGCATACTGGAGGGATGGCTCCGGCGTCTCAAAGAAGCCTACTATGATGCCGAGGACTTG TTGGACGAGCATGAGTACAATGTCCTTGAGGGCAAGGCCAAGAGCGGAAAAAGTCTCCTG TTAGGAGAGCATGGAAGCTCCTCCACTGCAACTACTGTCATGAAGCCTTTTCATGCTGCT CTGAGCAGGGCGCGGAACTTGCTCCCTCAAAACAGAAGGCTACTTAGCAAGATGAACGAG CTCAAAGCAATCCTGACAGAAGCCCAACAACTTCGAGATCTTCTTGGTTTGCCACATGGC AATACCGTCGAGTGGCCAGCTGCAGCACCTACCAGTGTTCCCACAACCACATCACTTCCC ACTTCCAAGGTTTTTGGTCGCGACAGGGATCGTGATCATATAGTAGATTTTCTTCTCGAC AAGACAACAACTGCTCAGGCAAGCTCAGCTAAGTACTCGGGTTTGGCCATTGTTGGAGTA GGAGGAATGGGGAAGTCCACCTTAGCACAGTATGTCTACAACGACAAAAGGATAGAAGAA TGCTTCGATGTCAGGATGTGGGTGTGTATCTCACGCAAACTTGATGTCCATCGTCACACA AGGGAGATCATGGAGTCTGCAAAAAAGGGGGAGTGCCCACATGTTGATAATCTCGATACT CTCCAGTGCAAATTACGTGATATACTACAAGAGTCACATAAATTCCTGCTTGTCTTGGAT GATGTTTGGTTTGAAAAATCTGATACTGAGACAGAGTGGGAGCTACTCCTTGCTCCATTA GTCTCTAAACAGTCGGGGAGCAAGGTTTTGGTGACTACTCGATGTGAGACACTTCCGGCC GCTGTTTGCTGTGAACAAGTCGTTCATTTGAAAAACTTGGATGATACTGAGTTCTTGGCT CTCTTTAAACACCATGCTTTCTCTGGAGCAGAAATCAAAGACAAGCTCCTACACACGAAG TTGGAACACACTACAGAGGAGATTGCTAAAAGGCTTGGGCAATGTCCTTTGGCAGCAAAA GTTCTGGGTTCCCGATTGTGCAGGAAAAAGGATATTGCTGAATGGAAAGCTGCTCTAAAG CTTGGAGATTTAAGTGATCCCTTCACATCTCTGTTGTGGAGTTACGAGAAGTTAGATCCA CGTCTCCAGAGGTGCTTCTTGTATTGCAGCTTGTTTCCAAAAGGTCATAGATATGAACCT AATGAGTTGGTTCACCTCTGGGTGGCAGAAGGATTTGTTGGTTCATGCAATTTGAGTAGG AGAACATTGGAAGAGGCTGGGATGGATTACTTCAATGATATGGTCTCTGGATCTTTCTTC CAATTGGTTTCTAAAAGACATTATTCATACTATATCATGCATGATATCCTTCATGATTTG GCAGAGTCACTCTCTAGAGAAGACTGCTTTAGATTAGAAGATGATAATGTGACAGAGATA CCATGCACTGTTCGATATCTATCTGTCCGTGTTGAAAGTATGCAAAAGCATAAGGAAATT ATCTACAAGCTACATCATTTACGCACTGTTATCTGCATCGATTCACTAATGGATAATGCA AGTATTATTTTTGATCAGATGCTGTGGAACTTGAAGAAGTTACGCGTATTGTCTTTGTCA TTTTACAACAGCAACAAGTTACCTAAATCTGTTGGTGAGCTGAAGCACCTTCGGTATTTG GACCTCACCAGAACATCAGTGTTTGAATTGCCTAGATCATTATGTGCTCTTTGGCACTTA CAACTACTTCAGCTAAACGGCATGGTGGAGAGGTTGCCTAACAAAGTTTGCAATTTAAGT AAGTTACGGTATCTGCGAGGGTATAAGGACCAAATTCCCAACATTGGCAAGCTTACTTCT TTACAACAGATATATGTCTTTTCTGTGCAAAAGAAGCAAGGATATGAGTTGCGACAGCTA AAGGACTTGAATGAGCTTGGCGGCAGTTTACATGTACAAAATCTTGAGAATGTTATTGGA AAGGATGAAGCCTTAGCGTCGAAGCTATATCTGAAAAGTCGCCTTAAAGAGTTGACACTT GAGTGGAGTTCTGAGAATGGCATGGATGCAATGAATATTCTGCATTTGGATGTTCTAGAG GGTCTGCGACCGCCACCCCAACTGAGTAAGCTCACAATCAAAGGTTACAAATCTGACACA TATCCTGGGTGGTTACTTGAGCGATCCTATTTTAAGAATTTGGAACGTTTTGAGCTTAAT AATTGCAGTTTGCTAGAAGGCTTACCACCAGATACAGAGCTCCTTCAGCATTGTTCTAGA CTGTTGCTGTTGGACGTTCCAAAACTGAAGACATTACCATGTCTTCCACCAAGCCTTACA AAGTTGTCAATTTGTGGCCTCCCCCTGCTTACTTTTGTCACCAAAAATCAGCTCGAACAA CATGACTCTAGGGAAAATATAATGATGGCAAACCACCTGGCATCTAAACTTTCATTGATG TGGGAGGTGGATTCAGGATCTAGTGTTAGGAGTGTACTGTCGAAAGACTATTCATCTCTT AAGCAGTTGATGACATTGATGATAGATGATGATATATCAAAGCATCTTCAAATTATTGAA AGTGGTCTAGAGGAAGGAGATAAAGTATGGATGAAAGAAAACATCATCAAGGCATGGCTC TTTTGCCATGAGCAGAGGATAAGATTCACTTATGGAAGGGCCATGGAGCTGCAAGTGGTT CTACCATTAGGACTTTGTAAACTTTCCCTTTCGTCATGCAATATTATAGATGAAGCTTTA GCTATTTGCCTTGAAGGCCTCACTTCACTGGCAACTTTAGAATTGGAATATAATATGGCA CTAACTACACTTCCATCAGAAGAGGTGTTTCAACATTTGACAAACCTTGACATGTTGATT CTAAGTGGTTGTTGGTGTCTCAAGTCACTGGGGGGCTTACGTGTTGCTTCATCTCTTTCC ATTCTTCACTGTTGGGATTGTCCTTCTTTAGAGCTAGCACGTGGAGCAGAACTAATGCCG TTGAACCTTGCTAGCAATCTCAGCATCCGTGGCTGCATTCTTGCAGCTGATTCGTTCATT AATGGCTTGCCACATCTGAAACATCTTTCCATTGATGTCTGCAGAAGCTCCCCATCCTTG TCGATTGGCCACCTGACCTCCCTTGAATTATTAGATCTAAATGGTCTCCCTGATCTTTGC TTTGTTGAAGGCTTGTCTTCCCTGCACCTTAAGCACCTAAGTTTAGTAGATGTTGCAAAC CTCACTGCCAAGTGCATCTCACAGTTTCGTGTCCAGGAATCGCTCACGGTTAGTAGCTCT GTATTGCTCAACCACATGCTAATGGCTGAAGGGTTTACAGCCCCACCAAATCTTACTCTT TTAGATTGCAAGGAGCCATCATTTTCATTTGAAGAACCTGCAAATCTCTCATCTGTCAAG CGCCTGGATTTTTCGCTTTGCGAAATGGAGTCCCTGCCAAGAAATCTTAAATCTCTCTCA AGTCTAGAGAGTCTTCATATAGGGCGTTGCCCCAACGTAGCATCTTTACCTGATCTGCCA TCCTCCCTCCAGCGCATAGCTATATGGTGTTGTCCCGTCTTGAAGAAGAACTGCCAAGAA CCTGATGGGGAAAGCTGGCCAAAGATTTCGCACCTTCGCTGGAAGCACATCTACTAA