Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d023301_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:10:2367421:2372841:1 gene:Zm00001d023301 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable galacturonosyltransferase 7
Sequence

ATGAAGGGGCACCAGCACCAGCAGCAGTCGTCGTCTCCGCTGCTGCCGATGCCGCCGCCC
AGCAAGCGCCGCTGTAGCGCGCTGGCGGCGGCCGTGCCGGCGCTCGTCGTCTGCTCCACG
CTGCTCCCGCTCGTCTACCTCCTCGCCCTGCACCGCCCCGCCGGGTATGGATCGGACGAC
CGCGCCGCGGTGGTCATCAGCACCGAGCTCGCCGGCCTCGGGGCGCGTGGCAGCCGGCAT
CTGGAGAACGGGGGCGCCATGAAGCACAAGCTGCTCAAGGATGTTTCCAAAAAGGTGTCT
GGATCTGATGGGGTTTCCGCTGAGAGATCTACTAGATCGAGGTTTAGCCAGGATCATGCT
GCCAAATCAAAAGCAAAGCTCAAGGGCGCTTTCTCTTTACTTGGACTGAACAATGATACC
TTCAAAGGACCTCGTACCTCCAAAAGGTTTCAGTTGAAGGACCTGTCCTGGAGATCAAAG
GATACTACTGTCAATGGGAAAGAGAACCATGATCAAGAGACAGTGCATGAGGAGAATACC
AAGTCCTGTGAACATGAATATGGGAGTTACTGCCTCTGGTCTACTGAACACAGGGAAGTA
ATGAAGGATGCCATTGTCAAGAAGCTTAAAGATCAACTTTTTATGGCAAGAGCTCATTAT
CCTAGCATTGCAAAATTGAAGCAACATGAAGCATTTACACGTGAACTGAAGCAAAACATC
CAAGAACATGAACGCATGCTGAGTGACACCATCACAGATGCTGATCTTCCACCATTTTTT
GCAAAGAAGCTGGAGAAGATGGAGCACACAATTGTGAGAGCCAAGTCTAGTGAAGTAGGA
TGCTCCAATGTTGAACGGAAACTTAGGCAGCTACTTGATATAACTGAAGATGAAGCTTAT
TTCCATACAAGGCAGAGTGCATTTCTATATCATCTTGGAGTGCAGACTATGCCGAAAACT
CACCATTGCTTGAACATGAGATTGACAGTAGAATATTTCAAGTCTGGATCAAATCATGTG
GATCAGTTAAATGACCAGAAGCTTGAAAGTCCTGCCTTACATCACTATGTAATGTTTTCC
AGGAATGTACTTGCAGCTTCCACCACTATCAATTCAACGGTTATGAACTCCCAGGATTCG
GACCACATCGTTTTCCATGTATTCACTGATGCACAAAACTTTTATGCGATGAAGTATTGG
TTCGATAAAAATTCATACTTGGAGTCGACTGTACGCGTAACTAACATTGAGGACAACCAG
AAGCTCTCTAAGGATGTAGATTCCCTTGAGATGCAACAATTATGGCCTACAGAGGAATAT
CGTGTCACGATTCGTAATCATTCTGAACCTTTCCAGAGGCAGATGAAAACTAAGTACATA
TCTATCTTCGGCCTTTCACATTTCCTCTTGCCTGACCTTCTTCCTGGCTTGAATAGAGTA
GTTGTTCTGGATGATGATTTGATTGTCCAGAAGGACTTGTCACCTCTATGGAACCTCGAT
ATGGGTGGTAAAGTGATTGGAGCAGTCCAGTTCTGTGGAGTGAGATTAGGGCAGCTGAAA
CCTTATATAGCAGACCATAACGTCGATGATGATTCATGTGTGTGGTTGTCGGGCCTGAAT
GTCATTGAATTGGATAAATGGAGGGACACCGGCATTACCAGTTTGCATGATCAATCAGTC
CAGAAGTTGCGAAAGGACAGCCTGAAATCACAGCGACTGCAAGCACTCCCTGCAGGTCTA
CTTGCCTTTCAAGACCTGATATATCCTTTGGAAGATTCATGGGTTGAGTCAGGCCTTGGA
CATGATTATGGAATCAGCCATGTCGATATAGAGAAGGCTGCTACTCTGCACTACAATGGT
GTGATGAAACCTTGGCTTGACTTGGGGATACTTGATTACAAGAACTACTGGAGGAAGTAC
ATGACCAGTGGAGAGAAGTTCATGACGGAATGCAACATTCACTAA

Peptide Sequence

PEP ID

Zm00001d023301_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:10:2367421:2372841:1 gene:Zm00001d023301 transcript:Zm00001d023301_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable galacturonosyltransferase 7
Sequence

MKGHQHQQQSSSPLLPMPPPSKRRCSALAAAVPALVVCSTLLPLVYLLALHRPAGYGSDD
RAAVVISTELAGLGARGSRHLENGGAMKHKLLKDVSKKVSGSDGVSAERSTRSRFSQDHA
AKSKAKLKGAFSLLGLNNDTFKGPRTSKRFQLKDLSWRSKDTTVNGKENHDQETVHEENT
KSCEHEYGSYCLWSTEHREVMKDAIVKKLKDQLFMARAHYPSIAKLKQHEAFTRELKQNI
QEHERMLSDTITDADLPPFFAKKLEKMEHTIVRAKSSEVGCSNVERKLRQLLDITEDEAY
FHTRQSAFLYHLGVQTMPKTHHCLNMRLTVEYFKSGSNHVDQLNDQKLESPALHHYVMFS
RNVLAASTTINSTVMNSQDSDHIVFHVFTDAQNFYAMKYWFDKNSYLESTVRVTNIEDNQ
KLSKDVDSLEMQQLWPTEEYRVTIRNHSEPFQRQMKTKYISIFGLSHFLLPDLLPGLNRV
VVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQLKPYIADHNVDDDSCVWLSGLN
VIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGLLAFQDLIYPLEDSWVESGLG
HDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKNYWRKYMTSGEKFMTECNIH

Transcript Sequence

Transcript ID

Zm00001d023301_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:2367421:2372841:1 gene:Zm00001d023301 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable galacturonosyltransferase 7
Sequence

GCAGCCTCCTCCTTCCTCCCTCGCCACTCTCCCCTCCACCGCTGCCTGGTGTGTAGCGTA
GCGTAGAGGCGCGGCGCGGCGCGGCTGACTGGTTGGTTCCAGTTGTTCTAGACAACGCTG
GCTTAACCGCGCGAGGCCCGAGGAAAGTTAGCTTGTTTCTTGCAGCTGAATGCGGGAAGC
AAGCAACTGCATTTTACTAACCTCACCACACCAGACCCACCACTGACTTCCCGGCCTCCG
GCTCTGGAGCAGAGCAGGTGGCAGCACTAGCACGGCCACGTGCGGCATGAAGGGGCACCA
GCACCAGCAGCAGTCGTCGTCTCCGCTGCTGCCGATGCCGCCGCCCAGCAAGCGCCGCTG
TAGCGCGCTGGCGGCGGCCGTGCCGGCGCTCGTCGTCTGCTCCACGCTGCTCCCGCTCGT
CTACCTCCTCGCCCTGCACCGCCCCGCCGGGTATGGATCGGACGACCGCGCCGCGGTGGT
CATCAGCACCGAGCTCGCCGGCCTCGGGGCGCGTGGCAGCCGGCATCTGGAGAACGGGGG
CGCCATGAAGCACAAGCTGCTCAAGGATGTTTCCAAAAAGGTGTCTGGATCTGATGGGGT
TTCCGCTGAGAGATCTACTAGATCGAGGTTTAGCCAGGATCATGCTGCCAAATCAAAAGC
AAAGCTCAAGGGCGCTTTCTCTTTACTTGGACTGAACAATGATACCTTCAAAGGACCTCG
TACCTCCAAAAGGTTTCAGTTGAAGGACCTGTCCTGGAGATCAAAGGATACTACTGTCAA
TGGGAAAGAGAACCATGATCAAGAGACAGTGCATGAGGAGAATACCAAGTCCTGTGAACA
TGAATATGGGAGTTACTGCCTCTGGTCTACTGAACACAGGGAAGTAATGAAGGATGCCAT
TGTCAAGAAGCTTAAAGATCAACTTTTTATGGCAAGAGCTCATTATCCTAGCATTGCAAA
ATTGAAGCAACATGAAGCATTTACACGTGAACTGAAGCAAAACATCCAAGAACATGAACG
CATGCTGAGTGACACCATCACAGATGCTGATCTTCCACCATTTTTTGCAAAGAAGCTGGA
GAAGATGGAGCACACAATTGTGAGAGCCAAGTCTAGTGAAGTAGGATGCTCCAATGTTGA
ACGGAAACTTAGGCAGCTACTTGATATAACTGAAGATGAAGCTTATTTCCATACAAGGCA
GAGTGCATTTCTATATCATCTTGGAGTGCAGACTATGCCGAAAACTCACCATTGCTTGAA
CATGAGATTGACAGTAGAATATTTCAAGTCTGGATCAAATCATGTGGATCAGTTAAATGA
CCAGAAGCTTGAAAGTCCTGCCTTACATCACTATGTAATGTTTTCCAGGAATGTACTTGC
AGCTTCCACCACTATCAATTCAACGGTTATGAACTCCCAGGATTCGGACCACATCGTTTT
CCATGTATTCACTGATGCACAAAACTTTTATGCGATGAAGTATTGGTTCGATAAAAATTC
ATACTTGGAGTCGACTGTACGCGTAACTAACATTGAGGACAACCAGAAGCTCTCTAAGGA
TGTAGATTCCCTTGAGATGCAACAATTATGGCCTACAGAGGAATATCGTGTCACGATTCG
TAATCATTCTGAACCTTTCCAGAGGCAGATGAAAACTAAGTACATATCTATCTTCGGCCT
TTCACATTTCCTCTTGCCTGACCTTCTTCCTGGCTTGAATAGAGTAGTTGTTCTGGATGA
TGATTTGATTGTCCAGAAGGACTTGTCACCTCTATGGAACCTCGATATGGGTGGTAAAGT
GATTGGAGCAGTCCAGTTCTGTGGAGTGAGATTAGGGCAGCTGAAACCTTATATAGCAGA
CCATAACGTCGATGATGATTCATGTGTGTGGTTGTCGGGCCTGAATGTCATTGAATTGGA
TAAATGGAGGGACACCGGCATTACCAGTTTGCATGATCAATCAGTCCAGAAGTTGCGAAA
GGACAGCCTGAAATCACAGCGACTGCAAGCACTCCCTGCAGGTCTACTTGCCTTTCAAGA
CCTGATATATCCTTTGGAAGATTCATGGGTTGAGTCAGGCCTTGGACATGATTATGGAAT
CAGCCATGTCGATATAGAGAAGGCTGCTACTCTGCACTACAATGGTGTGATGAAACCTTG
GCTTGACTTGGGGATACTTGATTACAAGAACTACTGGAGGAAGTACATGACCAGTGGAGA
GAAGTTCATGACGGAATGCAACATTCACTAATTAACAGGGCATGAAATGCACCAAACACT
CATTTTTTCGGGCATTTGGACAACAGACTTCATGGGCTTTGTTCATCATGAAAATAAACA
GAATCACGCCTGACCTGCAACATCCATGATGACACAAATTCACCCCTGACGTGACGAGGG
AGTGCTCAGTCCAATTCCAAGAGGAGAATAAGATGAAATGCTTTCTGCGGAACGTTGCCA
TAACAGCATCCACGATGTCTGAAGGACGCTAGCACGAAACCTGAGTTATGTTGCAGAGTA
CCAAGATATAACGTAGAATATTTCACACTGTTCATTATGGTTTGATGAGTTTTTTTCCCT
ATATTCAGCTTGGCATTGCAAAAGTGCAGTTCCTTGCTGTTCATTTTTAGTATAAGATCT
TTGGTGCTATTCTTTTTGCTCATTGTGCAAGAGCAATACTGAGGGAGTTCAATGTTGACG
GCG