Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d023278_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:10:2027907:2031976:1 gene:Zm00001d023278 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homoserine dehydrogenase

Sequence

ATGCCGACACCAGTGAAGTCGGTGCTGCCCGTAGTGCTCCTCGGCTGCGGCGGCGTCGGC
CGCTACCTCCTCCGCCACATCGTCTCCTGCCGTCCCCTCCACGCCAACCAGGGCGTGGCC
ATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCTGCTCGTCGCCGAAGATGTCCACTCC
ACCGGCCTCGATGACGCGCTCCTCACCCAGCTCTGCGCCGCCAAGTCCGCAGGCTCTCCC
CTCTCCTCCCTGCTCGGCCGAGGGCACTGTCAGCTGTTCAAGAACCCTGAGGCTAGGGGC
AAAGTCATAGACGCCGCTACCACACTCGGAAGAACAACTGGTCTGGTGCTAGTTGACTGT
TCTGCAACTTATGACACTGTTAGCCTGCTGAAAGATGCTGTGGATCATGGATGCTGTGTC
GTATTGGCAAACAAGAAACCTCTTACCGGTGCTTATGAGGATTTTCAGAAGTTGGTCTCC
AACTTCCGTCGGATAAGATTTGAATCTACTGTTGGAGCAGGTTTGCCTGTGATAGCTTCT
GTAACCCGTATTATTGCATCTGGAGACCCTATTACTCGTATTGTTGGCAGTTTGAGTGGT
ACACTTGGGTATGTGATGAGTGAGCTTGAGGATGGAAAGAAATTTAGTGAAGTTGTAAAA
ACTGCCAAGTCCCTTGGCTATACAGAACCAGATCCACGTGATGATCTAGGTGGAATGGAT
GTCGCTAGAAAGGCATTGATCCTGGCTAGGCTTCTTGGGCAACAGATAAGCATGGAGAGT
ATCAATGTTGAGAGTTTATATCCTAGTGAATTAGGACCTGATGCAGTGTCCACAAAGGAC
TTCCTTGAAAGTGGTTTAGTGCAACTTGACAAGAGCATGGAAGAAAGAATCAGAGCAGCA
TCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGAGATTGAAAGCGCAGGGTGCCAGGTA
GGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGGTAGATTGAGGGGAAGTGACAATGTG
GTCGAGATATACAGCAGATGTTACCAGAGCTCCCCTCTGGTGATCCAGGGCGCAGGAGCT
GGCAACGACACCACTGCCGCCGGCGTCCTTGCTGACATAATCGATCTCCAAGACCTGTTC
CAGACGATGGCTTGA

Peptide Sequence

PEP ID

Zm00001d023278_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:10:2027907:2031976:1 gene:Zm00001d023278 transcript:Zm00001d023278_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homoserine dehydrogenase

Sequence

MPTPVKSVLPVVLLGCGGVGRYLLRHIVSCRPLHANQGVAIRVVGVADSSSLLVAEDVHS
TGLDDALLTQLCAAKSAGSPLSSLLGRGHCQLFKNPEARGKVIDAATTLGRTTGLVLVDC
SATYDTVSLLKDAVDHGCCVVLANKKPLTGAYEDFQKLVSNFRRIRFESTVGAGLPVIAS
VTRIIASGDPITRIVGSLSGTLGYVMSELEDGKKFSEVVKTAKSLGYTEPDPRDDLGGMD
VARKALILARLLGQQISMESINVESLYPSELGPDAVSTKDFLESGLVQLDKSMEERIRAA
SSRGNVLRYVCEIESAGCQVGLKELPKDSALGRLRGSDNVVEIYSRCYQSSPLVIQGAGA
GNDTTAAGVLADIIDLQDLFQTMA

Transcript Sequence

Transcript ID

Zm00001d023278_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:2027907:2031976:1 gene:Zm00001d023278 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homoserine dehydrogenase

Sequence

GGTGGTGGCTGATTCATCAGGATCCGCATTTTGGGCCCACACGCCAGAGAGAGGAGGTCT
GGTAGTGCGAGTACCACCCACACGAACACCAGTTCACTAATCACTACCTCTCCCTCTCCG
TCGCGACACAGGCCACGGCGGGCGGCGGCGGAGGCTTCCGTGCGGCTCTTGGCGGATTGA
ACGCCCACTCGAGCTGCGCCGGCTGCTGTTTCAGCCGTCCTTAGATAGACCCTGCTTTCC
TCCCGGGCAAATCCAAGTTGCCCAAATGCCGACACCAGTGAAGTCGGTGCTGCCCGTAGT
GCTCCTCGGCTGCGGCGGCGTCGGCCGCTACCTCCTCCGCCACATCGTCTCCTGCCGTCC
CCTCCACGCCAACCAGGGCGTGGCCATCCGGGTGGTGGGCGTCGCCGATAGCTCCTCCCT
GCTCGTCGCCGAAGATGTCCACTCCACCGGCCTCGATGACGCGCTCCTCACCCAGCTCTG
CGCCGCCAAGTCCGCAGGCTCTCCCCTCTCCTCCCTGCTCGGCCGAGGGCACTGTCAGCT
GTTCAAGAACCCTGAGGCTAGGGGCAAAGTCATAGACGCCGCTACCACACTCGGAAGAAC
AACTGGTCTGGTGCTAGTTGACTGTTCTGCAACTTATGACACTGTTAGCCTGCTGAAAGA
TGCTGTGGATCATGGATGCTGTGTCGTATTGGCAAACAAGAAACCTCTTACCGGTGCTTA
TGAGGATTTTCAGAAGTTGGTCTCCAACTTCCGTCGGATAAGATTTGAATCTACTGTTGG
AGCAGGTTTGCCTGTGATAGCTTCTGTAACCCGTATTATTGCATCTGGAGACCCTATTAC
TCGTATTGTTGGCAGTTTGAGTGGTACACTTGGGTATGTGATGAGTGAGCTTGAGGATGG
AAAGAAATTTAGTGAAGTTGTAAAAACTGCCAAGTCCCTTGGCTATACAGAACCAGATCC
ACGTGATGATCTAGGTGGAATGGATGTCGCTAGAAAGGCATTGATCCTGGCTAGGCTTCT
TGGGCAACAGATAAGCATGGAGAGTATCAATGTTGAGAGTTTATATCCTAGTGAATTAGG
ACCTGATGCAGTGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTGCAACTTGACAAGAG
CATGGAAGAAAGAATCAGAGCAGCATCTTCGAGAGGAAACGTTCTTCGCTACGTCTGTGA
GATTGAAAGCGCAGGGTGCCAGGTAGGCCTTAAAGAGCTCCCAAAGGATTCTGCGCTGGG
TAGATTGAGGGGAAGTGACAATGTGGTCGAGATATACAGCAGATGTTACCAGAGCTCCCC
TCTGGTGATCCAGGGCGCAGGAGCTGGCAACGACACCACTGCCGCCGGCGTCCTTGCTGA
CATAATCGATCTCCAAGACCTGTTCCAGACGATGGCTTGATCGTTGATCGGCATCCACAC
CAGTACACCATCTTGATTTTTGCAAGGCACCAGAGCGTTTGATACTTTGATCGGTGCCAG
TGGAATCCCTCCACTGCCCACTGGTGGGCTTCGCTCCTTGTCATGTGTGCAATTTGTTCA
CGGGCATGCTCTCAGGCTGAGAGCCTGAGACGTCTGACATTCGAAATGTAATTTTGAGCA
GGCGTGTGGGGGATTTCTTTACAGTTTACATAAAGGAACTTTGTTTCAGTGAAATAATGT
CGCGGTCTCCACATTAAACTAATAAACAGTCCGAGCTATATTGCCGCTATCTGATAGTGA
AATAATGTCGCTGGCAGCCTGAAACCGTG