Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d023243_T011
CDS Infomation

cds chromosome:B73_RefGen_v4:10:1295448:1301283:-1 gene:Zm00001d023243 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-isopropylmalate synthase 1 chloroplastic
Sequence

ATGGCGTCCTCGCTGCTCTCCTCCCCCGCTAAACCCACCATCACCACCACCACCAAAACG
ACCCCGGCCCCAAGACCCGCCCGCTCCGCCCATGTCCATGTCCTCTCCGCCGCCCGCTGC
CTCCGCCTCCGCCTCCGCGCGTCGTCGCAGCATCCTCCGCCTCCGCCCACCCCGCGGTCG
CGGCGGCCGGATTACGTCCCGAACCGCATCGACGACCCCAACTACGTGCGCATCTTCGAC
ACCACGCTGCGCGACGGGGAGCAGTCGCCGGGCGCCACCATGACGAGCGCCCAGAAGCTC
GTCGTCGCGCGCCAGCTGGCCCGCCTCGGCGTCGACATCATCGAGGCCGGGTTCCCGGCC
TCCTCCCCCGACGACCTCGACGCCGTGCGCTCCATCGCCATCGAGGTCGGCAACCCGGCG
CCAGGACCCGCCGGGGAGGAGGACGCCGTCCACGTGCCGGTCATCTGCGGCCTCTCGCGG
TGCAACCGGAAGGACATCGACGCCGCGTGGGAGGCCGTGCGCCACGCGCGCCGCCCCCGG
ATCCACACCTTCATCGCCACCAGCGACATTCACATGCAGCATAAGCTCAGGAAGACGCCC
GACCAGGTGGTCGCCATTGCCAGGGAGATGGTGGCCTACGCCCGCAGCCTCGGATGCACT
GACGTCGAGTTCAGCCCCGAGGACGCCGGCAGGTCAAATAGAGAGTTCTTGTATCATATT
CTAGGGGAAGTCATAAAAGCTGGAGCTACGACTCTCAATATCCCGGACACTGTCGGATAC
AATCTTCCTTATGAATTTGGAAAGTTGATTGCTGATATAAAGGCAAACACTCCTGGAATT
GAAAAGGCTATCATTTCCACTCATTGTCAGAATGACCTTGGTCTTGCGACTGCCAACACA
CTAGCGGGCGCTCGTGCAGGAGCACGGCAGTTAGAGGTTACTATTAATGGTATTGGTGAA
AGGGCTGGAAATGCTTCTTTGGAGGAGGTTGTCATGGCAATTAAATGCCGCAGAGAACTG
TTAGATGGTCTCTATACTGGAATCGATTCCCGACATATCACTTTGACGAGCAAAATGGTG
CAAGAGCATAGTGGACTTCACGTGCAGCCACATAAAGCTATTGTTGGTGCCAATGCGTTC
GCTCATGAAAGTGGAATTCATCAGGATGGGATGCTTAAATATAAAGGAACATACGAAATT
ATATCGCCTGATGATATTGGTCTAACACGTGCAAATGAATTTGGTATTGTTCTTGGGAAA
CTCAGCCCAAGGCTTAATAGGATTGATAGAATACTAATATAA

Peptide Sequence

PEP ID

Zm00001d023243_P011
PEP Infomation

pep chromosome:B73_RefGen_v4:10:1295448:1301283:-1 gene:Zm00001d023243 transcript:Zm00001d023243_T011 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-isopropylmalate synthase 1 chloroplastic
Sequence

MASSLLSSPAKPTITTTTKTTPAPRPARSAHVHVLSAARCLRLRLRASSQHPPPPPTPRS
RRPDYVPNRIDDPNYVRIFDTTLRDGEQSPGATMTSAQKLVVARQLARLGVDIIEAGFPA
SSPDDLDAVRSIAIEVGNPAPGPAGEEDAVHVPVICGLSRCNRKDIDAAWEAVRHARRPR
IHTFIATSDIHMQHKLRKTPDQVVAIAREMVAYARSLGCTDVEFSPEDAGRSNREFLYHI
LGEVIKAGATTLNIPDTVGYNLPYEFGKLIADIKANTPGIEKAIISTHCQNDLGLATANT
LAGARAGARQLEVTINGIGERAGNASLEEVVMAIKCRRELLDGLYTGIDSRHITLTSKMV
QEHSGLHVQPHKAIVGANAFAHESGIHQDGMLKYKGTYEIISPDDIGLTRANEFGIVLGK
LSPRLNRIDRILI

Transcript Sequence

Transcript ID

Zm00001d023243_T011
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:1295448:1301283:-1 gene:Zm00001d023243 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-isopropylmalate synthase 1 chloroplastic
Sequence

AAACCCGCGACGACGGTCGACCATGGCGTCCTCGCTGCTCTCCTCCCCCGCTAAACCCAC
CATCACCACCACCACCAAAACGACCCCGGCCCCAAGACCCGCCCGCTCCGCCCATGTCCA
TGTCCTCTCCGCCGCCCGCTGCCTCCGCCTCCGCCTCCGCGCGTCGTCGCAGCATCCTCC
GCCTCCGCCCACCCCGCGGTCGCGGCGGCCGGATTACGTCCCGAACCGCATCGACGACCC
CAACTACGTGCGCATCTTCGACACCACGCTGCGCGACGGGGAGCAGTCGCCGGGCGCCAC
CATGACGAGCGCCCAGAAGCTCGTCGTCGCGCGCCAGCTGGCCCGCCTCGGCGTCGACAT
CATCGAGGCCGGGTTCCCGGCCTCCTCCCCCGACGACCTCGACGCCGTGCGCTCCATCGC
CATCGAGGTCGGCAACCCGGCGCCAGGACCCGCCGGGGAGGAGGACGCCGTCCACGTGCC
GGTCATCTGCGGCCTCTCGCGGTGCAACCGGAAGGACATCGACGCCGCGTGGGAGGCCGT
GCGCCACGCGCGCCGCCCCCGGATCCACACCTTCATCGCCACCAGCGACATTCACATGCA
GCATAAGCTCAGGAAGACGCCCGACCAGGTGGTCGCCATTGCCAGGGAGATGGTGGCCTA
CGCCCGCAGCCTCGGATGCACTGACGTCGAGTTCAGCCCCGAGGACGCCGGCAGGTCAAA
TAGAGAGTTCTTGTATCATATTCTAGGGGAAGTCATAAAAGCTGGAGCTACGACTCTCAA
TATCCCGGACACTGTCGGATACAATCTTCCTTATGAATTTGGAAAGTTGATTGCTGATAT
AAAGGCAAACACTCCTGGAATTGAAAAGGCTATCATTTCCACTCATTGTCAGAATGACCT
TGGTCTTGCGACTGCCAACACACTAGCGGGCGCTCGTGCAGGAGCACGGCAGTTAGAGGT
TACTATTAATGGTATTGGTGAAAGGGCTGGAAATGCTTCTTTGGAGGAGGTTGTCATGGC
AATTAAATGCCGCAGAGAACTGTTAGATGGTCTCTATACTGGAATCGATTCCCGACATAT
CACTTTGACGAGCAAAATGGTGCAAGAGCATAGTGGACTTCACGTGCAGCCACATAAAGC
TATTGTTGGTGCCAATGCGTTCGCTCATGAAAGTGGAATTCATCAGGATGGGATGCTTAA
ATATAAAGGAACATACGAAATTATATCGCCTGATGATATTGGTCTAACACGTGCAAATGA
ATTTGGTATTGTTCTTGGGAAACTCAGCCCAAGGCTTAATAGGATTGATAGAATACTAAT
ATAAATAAGGTGCATCTTCTTTTTCGGAAGCCTATTTCGAAAAAATCTTTGGGTTAAGTG
TGCTTGGCCTAGAGAAATCTTAGAATGGGTGACCGACTGAGAAGTCTTCTCGGACGGGGT
GCTACAATTGATATCAGAACCGACCCTCACGGTTTCATGGACGTGTGTGAGCTAGGGATT
CGGGTATACGGCGCATGACGCATGTGGGCCCAGAGTGGTCACATGACATGGCATATGACG
ACACTAGACACACAGACGTGGCCAAAAGGGGGAGGTTCTGGCTTAGGGTTGACTGACAAG
GACGTCGATCTTCTGTGGATTGTCATATCCTGGCCCGGGTGAATTGTGCAATATCTTAGC
CCAAGGCTTAATATTATTGATAGAATACTCATACAAATAAGATTCATCTTCTTTTCGAAA
GCCTATCTCGAAGGAACCTCTGGGTTAAGCGTGCTTGGCCCAAAGCAATCTTAGGATGGG
TGACCAACCGGAAAGTCTTCTCAAATTGCGTATGAGTGAGGGCAAAGTGCGCATAGAAGA
CTCGTGTGTTGGTCTGTGGAGATGGTCTATGGCCCTAGAGGGCTGACAGGAGTAAGTACC
GGCGGTCCGGTAGTGGACGAGGTGTTACATATACTATGTAGGCATTAGCTGTTGGTGACA
CATGTACAGCTAGTGTTACAAAAGTATTGGTGGTAGTAGGGTATGATGTAAAGCATTAGA
CTTCAGTCACAACATAAATCCGATATCATTATGCTATGACATACTATATTCTTGAACTGG
AAGCTTGATTTTTTTTCATGGAAGAAATTTCTGATCAAATATATGATCTAATTTATTATG
ATTACGCTTCTAAAATCATTATATTAGTTCAACTGAATATTATGTGTTCAACACAATTAG
GCAGGGGCATACATCAGTAAATTAGATCAAATTTGAGAATCTCATCCATACTAATGTTTT
CTGTTCTTGCTTTTTAGCGGAAGGCATGCTGTGAGATCTAAGCTAGTAGAGCTTGGATAT
GAAATCGGTGACAAGGAATTTGAGGACTTCTTTAAACGCTACAAAGAGGTTGCAGAGAAG
AAAAAGCGCGTAACTGATGAAGACTTAGAAGCGTTATTGTCAGATGAGATATTCCAGCCT
AAGGTTATTTGGTCCCTTGCTGATGTACAGGCAACATGTGGTACACTTGCTTTATCTACG
GCAACAGTGAAATTGGTAGCACCAGATGGAGAGGAGAAAATAGCATGTTCAGTCGGAACA
GGTCCAGTCGATGCAGCTTACAAGGCTGTTGACAAAATAATCCAGATTCCAACGGTTCTC
CGAGAATACAGTATGACATCAGTCACAGAAGGCATTGACGCAATCGCGACAACTCGGGTT
GTTGTCACTGGAGATGTGAGCAACAACGCCAAACATGCCCTGACTGGCCAGTCCTTCAAC
CGCTCCTTCAGCGGGAGCGGGGCATCCATGGACATTGTGGTGTCCAGTGTCAGAGCTTAC
CTGAGCGCCCTGAACAAGATCTGCAGTTTCGCTGGCGCCGTGAAAGCCAGCAGCGATGTA
GCTGAGACCGCAAGCGTCCCGAGCACAGAATGAGCTTCCGTTTAGTTCACAGTGACATGT
TCAAAATTTCTGGAAGGATCTTCCATTGAGCTTAGGACAGGCAGGAAGTCTTGGGGCCTA
TGTAGTGTACAATTTATGTGTGTCATATCCCGTGCTCGTTGCCAGTTTGTATTGTACCAT
ATATAAACCATAGAATATGTTGCCATTTAGAAGTCTGGCCAAGGTCAGCTGTAATGATTC
ACATGCTTATAGCCT