Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d023229_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:10:896443:898875:1 gene:Zm00001d023229 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

ATGGTCCTCCGGGCAAAGACTTCCTCCTTGATACAATCAGCTTCAAGAGCAGGAGCATGG
ATGCCCCCGCACCAACTCGCCATTTCCTCCGCCGCGACAAGGCCCTCCTCCACTCTCTCC
GCCGCAGTCGCCAGGTGCAGCAGAGCTGCGGCCATCACGGACCCCTTCGCCATCGCGGAC
GCCCTCTCCGCCGCCAGTTCCGCCCCGGCGTCGCAGTCCCTGTCCACCGGATCGCAGCTC
CACGCGTCCGGCATAAAGCTGGGCGTCGTTTTCGCCGACACCTACACCTCGAACCAGCTC
CTCATCCACTACTCCAAGCGCGGGCAACTCGCCAGCGCGCTGGACGTGTTCGACGAAACG
CCGAGCCGCAACCACGTCACCTGGACGGCTATTGTGTCCGCCGCGGCGCGCGGCGGGGCG
CCTGGCCTGGGCCTGCGGCTCTTCGCCTCCATGCTCAGGAGCGGGTTCTGCCCCAACGAG
TTCGCTCTGGCTAGCGCGCTCGGCGCTTGCTGCCAGTGGGTGGCGGCTGACGTGAAGCTG
GGCCTCTCCCTTCACGGCCTCGCCGTCAGGGCCGTCCTGCATGGAAACCCTTACGTGGGG
AGCTCGCTGATGCTGGTGTATGCCAAGCACGGGCGTGTCGCTGCTGCGGAGCGAGTGTTC
GCAGGCATAGCTTCCGGTTCCAGAGACGTGGCGTGCTGGAACGCGATGCTGGAGGGCTAC
GTCGCCAACGGCCATGGGTATGACGCGACGAGGACGGTGGCCCTGATGCATGGATCTGGA
ATAGCGCCTGACATGTTCACCTACATTTCGGCTGCGAAGGCTTCTTGGATCGCCCGCGAC
TTGTATTTCGGGCGGCAGGTCCATGGTCTCGTCGTCCGCAGCGTGTTGGAGTCCAACAAC
ACCTCAGTGATGAACGCACTCATGGATATGTATTTCAAAGCGGGACAGAAGGAAACCGCT
GCTGATATCTTTGGCAAGATTCGGTGGAAGGATACTGTTTCTTGGAACACGATGATATCA
GGCCTGGAGGACGAGAGGGCAGCTGCGGACTGCTTTGTCGACATGGCACGGTGCGGCTGC
AGGTCTAACCAAGTTACGTTCTCTGTCATGCTGAGGCTGAGTGGCGCCTCCCTCGGCCTT
CAGATCTTCGGACTTGCCTACCGCCATGGCTACTCTGACAACGTTCTTGTGGCGAACGCA
GCCATCAACATGCTCTCGCGGTGTGGGCTGCTCAGCTGTGCCTATGGCTACTTCTGTGAT
CTCGGTGTCCGGAACGTCGTGACGTGGAACGAGATGATCGCGGGCTATGGTCTGCACGGC
TGTTCTGGAGACGCGATGAGGCTCTTCCGCAGCTTGGTTTGCTTCGGAGCAAGACCGGAC
GAGTTCACCTATCCAGCCGTTCTGTCTGCCTTCCAACAGGACCATGATGCAAGGAACCAT
GAGCAAGTCCACGCAAGTGTTCTGAAACAGGGGTTCGCTTCATGCCAGTTCGTGTCCACC
TCGCTCATCAAAGCAAAAGCGGCCCTTGGCTCCTCAGTTCTAGGTCCACTGAAGATCATC
CAGGATGCTGGCGAGATGGATTTGGTGTCATGGGGAGTCGCCATCTCTGCGTTCGTGAAG
CATGGCTTGGGTCAAGAGGCACTGTCTCTCTTCAACTCGTGCAGAGTTGACTGCCCAGAG
AAGCCTGATGAGTTCATCCTGGGCACCATCCTGAATGCATGTGCAAACGCCGCGTTGATA
AGGCAGTGCAGATGCATCCATTCGCTCGTTGTCAGGACAGGACACAGCAAGCACTTGTGC
GTGTCCAGTGCTTTGGTTGATGCCTATGCGAAATGCGGTGACATCACTGCTGCCAAAGGC
GCTTTCGCTACGGTTTCGACCAAGGACGCCATAGTGTACAACACCATGCTGACAGCTTAT
GCCAACCATGGTCTGATCCGTGAAGTCCTCAGCCTCTACCAAGAGATGACTCAGCTTCAG
TTGGCGGCTCCAACACCAGCTACGTTCGTTGCTGCCATATCAGCTTGCAGCCACCTCGGG
CTAGTGGAGCAGGGGAAGCTTCTGTTCAGCTCCATGCTGTCTGCGCACGGCATGAATCCC
ACAAGGGCCAATTACGCATGCCTGATTGACCTCCTGGCGCGAAGAGGGCTCCTGGAAGAA
GCAACAGGCGTTATCCAGGCAATGCCGTTCCAACCGTGGCCTGCAGTATGGAGGTCACTG
ATGAACGGTTGCCGGATCCATGGGAACAAAGAACTCGGTCTGCTTGCTTCGGAACAGATC
CTGAGGATGGCACCAAACAGTGACGGCGCATATGTGTCGCTGTCGCATGTCTACGCTGAA
GATGGAGATTGGCGGTCTGCAGAGGACGCCAGGAGGAAGATGGCTGAGAATCAAGTGCAC
AAGGCGCAAGGTTACAGCAGTCTTCAGATCTAG

Peptide Sequence

PEP ID

Zm00001d023229_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:10:896443:898875:1 gene:Zm00001d023229 transcript:Zm00001d023229_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

MVLRAKTSSLIQSASRAGAWMPPHQLAISSAATRPSSTLSAAVARCSRAAAITDPFAIAD
ALSAASSAPASQSLSTGSQLHASGIKLGVVFADTYTSNQLLIHYSKRGQLASALDVFDET
PSRNHVTWTAIVSAAARGGAPGLGLRLFASMLRSGFCPNEFALASALGACCQWVAADVKL
GLSLHGLAVRAVLHGNPYVGSSLMLVYAKHGRVAAAERVFAGIASGSRDVACWNAMLEGY
VANGHGYDATRTVALMHGSGIAPDMFTYISAAKASWIARDLYFGRQVHGLVVRSVLESNN
TSVMNALMDMYFKAGQKETAADIFGKIRWKDTVSWNTMISGLEDERAAADCFVDMARCGC
RSNQVTFSVMLRLSGASLGLQIFGLAYRHGYSDNVLVANAAINMLSRCGLLSCAYGYFCD
LGVRNVVTWNEMIAGYGLHGCSGDAMRLFRSLVCFGARPDEFTYPAVLSAFQQDHDARNH
EQVHASVLKQGFASCQFVSTSLIKAKAALGSSVLGPLKIIQDAGEMDLVSWGVAISAFVK
HGLGQEALSLFNSCRVDCPEKPDEFILGTILNACANAALIRQCRCIHSLVVRTGHSKHLC
VSSALVDAYAKCGDITAAKGAFATVSTKDAIVYNTMLTAYANHGLIREVLSLYQEMTQLQ
LAAPTPATFVAAISACSHLGLVEQGKLLFSSMLSAHGMNPTRANYACLIDLLARRGLLEE
ATGVIQAMPFQPWPAVWRSLMNGCRIHGNKELGLLASEQILRMAPNSDGAYVSLSHVYAE
DGDWRSAEDARRKMAENQVHKAQGYSSLQI

Transcript Sequence

Transcript ID

Zm00001d023229_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:896443:898875:1 gene:Zm00001d023229 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

ATGGTCCTCCGGGCAAAGACTTCCTCCTTGATACAATCAGCTTCAAGAGCAGGAGCATGG
ATGCCCCCGCACCAACTCGCCATTTCCTCCGCCGCGACAAGGCCCTCCTCCACTCTCTCC
GCCGCAGTCGCCAGGTGCAGCAGAGCTGCGGCCATCACGGACCCCTTCGCCATCGCGGAC
GCCCTCTCCGCCGCCAGTTCCGCCCCGGCGTCGCAGTCCCTGTCCACCGGATCGCAGCTC
CACGCGTCCGGCATAAAGCTGGGCGTCGTTTTCGCCGACACCTACACCTCGAACCAGCTC
CTCATCCACTACTCCAAGCGCGGGCAACTCGCCAGCGCGCTGGACGTGTTCGACGAAACG
CCGAGCCGCAACCACGTCACCTGGACGGCTATTGTGTCCGCCGCGGCGCGCGGCGGGGCG
CCTGGCCTGGGCCTGCGGCTCTTCGCCTCCATGCTCAGGAGCGGGTTCTGCCCCAACGAG
TTCGCTCTGGCTAGCGCGCTCGGCGCTTGCTGCCAGTGGGTGGCGGCTGACGTGAAGCTG
GGCCTCTCCCTTCACGGCCTCGCCGTCAGGGCCGTCCTGCATGGAAACCCTTACGTGGGG
AGCTCGCTGATGCTGGTGTATGCCAAGCACGGGCGTGTCGCTGCTGCGGAGCGAGTGTTC
GCAGGCATAGCTTCCGGTTCCAGAGACGTGGCGTGCTGGAACGCGATGCTGGAGGGCTAC
GTCGCCAACGGCCATGGGTATGACGCGACGAGGACGGTGGCCCTGATGCATGGATCTGGA
ATAGCGCCTGACATGTTCACCTACATTTCGGCTGCGAAGGCTTCTTGGATCGCCCGCGAC
TTGTATTTCGGGCGGCAGGTCCATGGTCTCGTCGTCCGCAGCGTGTTGGAGTCCAACAAC
ACCTCAGTGATGAACGCACTCATGGATATGTATTTCAAAGCGGGACAGAAGGAAACCGCT
GCTGATATCTTTGGCAAGATTCGGTGGAAGGATACTGTTTCTTGGAACACGATGATATCA
GGCCTGGAGGACGAGAGGGCAGCTGCGGACTGCTTTGTCGACATGGCACGGTGCGGCTGC
AGGTCTAACCAAGTTACGTTCTCTGTCATGCTGAGGCTGAGTGGCGCCTCCCTCGGCCTT
CAGATCTTCGGACTTGCCTACCGCCATGGCTACTCTGACAACGTTCTTGTGGCGAACGCA
GCCATCAACATGCTCTCGCGGTGTGGGCTGCTCAGCTGTGCCTATGGCTACTTCTGTGAT
CTCGGTGTCCGGAACGTCGTGACGTGGAACGAGATGATCGCGGGCTATGGTCTGCACGGC
TGTTCTGGAGACGCGATGAGGCTCTTCCGCAGCTTGGTTTGCTTCGGAGCAAGACCGGAC
GAGTTCACCTATCCAGCCGTTCTGTCTGCCTTCCAACAGGACCATGATGCAAGGAACCAT
GAGCAAGTCCACGCAAGTGTTCTGAAACAGGGGTTCGCTTCATGCCAGTTCGTGTCCACC
TCGCTCATCAAAGCAAAAGCGGCCCTTGGCTCCTCAGTTCTAGGTCCACTGAAGATCATC
CAGGATGCTGGCGAGATGGATTTGGTGTCATGGGGAGTCGCCATCTCTGCGTTCGTGAAG
CATGGCTTGGGTCAAGAGGCACTGTCTCTCTTCAACTCGTGCAGAGTTGACTGCCCAGAG
AAGCCTGATGAGTTCATCCTGGGCACCATCCTGAATGCATGTGCAAACGCCGCGTTGATA
AGGCAGTGCAGATGCATCCATTCGCTCGTTGTCAGGACAGGACACAGCAAGCACTTGTGC
GTGTCCAGTGCTTTGGTTGATGCCTATGCGAAATGCGGTGACATCACTGCTGCCAAAGGC
GCTTTCGCTACGGTTTCGACCAAGGACGCCATAGTGTACAACACCATGCTGACAGCTTAT
GCCAACCATGGTCTGATCCGTGAAGTCCTCAGCCTCTACCAAGAGATGACTCAGCTTCAG
TTGGCGGCTCCAACACCAGCTACGTTCGTTGCTGCCATATCAGCTTGCAGCCACCTCGGG
CTAGTGGAGCAGGGGAAGCTTCTGTTCAGCTCCATGCTGTCTGCGCACGGCATGAATCCC
ACAAGGGCCAATTACGCATGCCTGATTGACCTCCTGGCGCGAAGAGGGCTCCTGGAAGAA
GCAACAGGCGTTATCCAGGCAATGCCGTTCCAACCGTGGCCTGCAGTATGGAGGTCACTG
ATGAACGGTTGCCGGATCCATGGGAACAAAGAACTCGGTCTGCTTGCTTCGGAACAGATC
CTGAGGATGGCACCAAACAGTGACGGCGCATATGTGTCGCTGTCGCATGTCTACGCTGAA
GATGGAGATTGGCGGTCTGCAGAGGACGCCAGGAGGAAGATGGCTGAGAATCAAGTGCAC
AAGGCGCAAGGTTACAGCAGTCTTCAGATCTAG