Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d023222_T025
CDS Infomation

cds chromosome:B73_RefGen_v4:10:707966:712414:-1 gene:Zm00001d023222 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin-activating enzyme E1 2
Sequence

ATGAAGCGCCTCTTCGGCTCCAATGTCCTCGTCTCTGGACTCCAGGGACTAGGCGCTGAG
ATCGCAAAAAACCTTGTCCTTGCGGGTGTCAAGTCTGTAACCTTACATGATGATGGCAAA
GTCGAGCTATGGGACTTGTCAAGCAATTTCTTCCTCTCAGAGAAGGATATTGGGCAAAAC
CGTGCTCATGCTTGTGTTCCAAAGCTACAGGAGCTTAACAATGCTGTCATCATCTCTACC
GTAACTGGTGATTTGACCAAGGAACAACTTTCTAACTTTCAGGCTGTGGTCTTTACTGAT
ATCAGCATAGAAAAAGCAGTTGAGTATGATGAATACTGTCATAGCCACCAGCCGCCAATT
GCTTTCATTAAGTCCGAAGTTTGTGGCCTTTTTGGCAGTGTTTTCTGTGACTTTGGTCCT
GAGTTCACTGTTTTGGATGTCGATGGCGAGGAACCACATACAGGAATTGTGGCATCAATC
AGCAACGACAATCCAGCACTTGTTTCTTGTGTGGATGATGAACGTCTGGAGTTCCAGGAT
GGTGATCTAGTTGTTTTCTCCGAAGTGCATGGAATGACCGAACTCAATGATGGAAAACCA
AGAAAGATTAAGAATGCAAGGCCTTATTCTTTTACTCTAGAAGAAGACACCACCTCATAT
GGCACTTACTTTAGAGGTGGTATTGTCACACAGGTGAAGCCACCAAAGGTTCTTAAATTC
AAAACCTTGAAGGATGCAATCAAGGAGCCAGGAGAATTTCTCATGAGTGATTTCTCCAAG
TTTGACCGGCCACCTCTTCTACATTTGGCCTTCCAAGCTTTGGACAAATTTAGGTCTGAG
TTGGCACGATTTCCTATTGCTGGGTCAGATGATGATGCACAGAAGCTGATAGACCTTGCT
ATTAGTATTAACGAAACTCTTGGTGATAGTAAGCTTGAAGAAATTGACAAGAAGCTCCTG
CAGCATTTCGCCAGTGGTTCCAGGGCTGTTTTGAATCCTATGGCTGCAATGTTTGGCGGT
ATTGTAGGCCAGGAGGTTGTTAAAGCATGCTCAGGGAAATTCCATCCACTTTACCAGTTC
TTCTACTTTGATTCTGTCGAATCTCTGCCAGTTGAACCGTTGGAGCCTAGTGATTTGAAG
CCAGAGAACAGTAGACATGATGCACAAATTAGTGTCTTTGGGGCTCAGCTTCAAAAGAAA
CTGGAGCAGTCAAAAATCTTCATGGTTGGTTCTGGGGCTCTTGGATGTGAATTTTTGAAG
AACCTTGCGTTAATGGGTATTTCTTGCAGTCAAAATGGGAAGCTGACTGTGACAGATGAT
GATGTTATAGAGAAAAGCAATCTCAGTCGCCAGTTTCTCTTCCGTGACTGGAACATTGGA
CAGCCCAAGTCCACAGTTGCTGCAACTGCCGCTATGGCAATTAATCCCGAGCTTCATGTG
GAGGCCCTTCAGAATAGAGCAAGTCCTGAGACTGAAAATGTGTTTAATGATGCCTTTTGG
GAGAGCTTGGATGCTGTTGTTAATGCATTGGACAATGTCACTGCAAGAATGTACATTGAC
TCTAGATGTGTATATTTCCAGAAGCCACTTCTTGAATCAGGTACTCTGGGTGCCAAGTGC
AACACACAGATGGTCATTCCTCACTTAACAGAAAACTATGGGGCATCCAGAGATCCACCA
GAAAAGCAGGCACCTATGTGCACTGTACATTCATTTCCTCACAATATTGATCACTGCCTG
ACATGGGCCAGATCTGAGTTTGAGGGTCTACTTGAGAAGACTCCCACTGAAGTAAATGCT
TTTCTGTCGAACCCTGGTGGATATGCAACCACAGCAAGAACTGCTGGTGATGCACAGGCT
AGAGACCAACTTGAGCGAGTTATTGAATGCCTTGAGACAGACAAGTGTGAGACATTCCAA
GATTGTATTACCTGGGCCCGGTTGAAGTTTGAGGATTATTTCTCCAACCGTGTAAAGCAG
CTGACATTCACTTTTCCTGAAGACGCAATGACTAGCTCTGGTGCTCCTTTCTGGTCTGCT
CCTAAGCGGTTCCCGCGACCACTGGAGTTCTCATCTTCTGACTCAAGTCACCTTAACTTC
TTGTTGGCTGCTTCTATATTAAGGGCAGAGACATTTGGAATACCCATACCTGGTTGGGCG
AAAAACCCAAAGAAACTAGCTGAAGCTGTGGACAAGGTCATTGTTCCGGATTTCCATCCA
AAAGAGGGTGTTAAGATAGAGACAGATGAGAAGGCTACTAGCCTATCCTCTGCGTCTGTT
GATGATGCTGCCGTCATTGAAGAGCTTATT

Peptide Sequence

PEP ID

Zm00001d023222_P025
PEP Infomation

pep chromosome:B73_RefGen_v4:10:707966:712414:-1 gene:Zm00001d023222 transcript:Zm00001d023222_T025 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin-activating enzyme E1 2
Sequence

MKRLFGSNVLVSGLQGLGAEIAKNLVLAGVKSVTLHDDGKVELWDLSSNFFLSEKDIGQN
RAHACVPKLQELNNAVIISTVTGDLTKEQLSNFQAVVFTDISIEKAVEYDEYCHSHQPPI
AFIKSEVCGLFGSVFCDFGPEFTVLDVDGEEPHTGIVASISNDNPALVSCVDDERLEFQD
GDLVVFSEVHGMTELNDGKPRKIKNARPYSFTLEEDTTSYGTYFRGGIVTQVKPPKVLKF
KTLKDAIKEPGEFLMSDFSKFDRPPLLHLAFQALDKFRSELARFPIAGSDDDAQKLIDLA
ISINETLGDSKLEEIDKKLLQHFASGSRAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQF
FYFDSVESLPVEPLEPSDLKPENSRHDAQISVFGAQLQKKLEQSKIFMVGSGALGCEFLK
NLALMGISCSQNGKLTVTDDDVIEKSNLSRQFLFRDWNIGQPKSTVAATAAMAINPELHV
EALQNRASPETENVFNDAFWESLDAVVNALDNVTARMYIDSRCVYFQKPLLESGTLGAKC
NTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPTEVNA
FLSNPGGYATTARTAGDAQARDQLERVIECLETDKCETFQDCITWARLKFEDYFSNRVKQ
LTFTFPEDAMTSSGAPFWSAPKRFPRPLEFSSSDSSHLNFLLAASILRAETFGIPIPGWA
KNPKKLAEAVDKVIVPDFHPKEGVKIETDEKATSLSSASVDDAAVIEELI

Transcript Sequence

Transcript ID

Zm00001d023222_T025
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:707966:712414:-1 gene:Zm00001d023222 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin-activating enzyme E1 2
Sequence

GGGCGCGAGACCATGAAGCGCCTCTTCGGCTCCAATGTCCTCGTCTCTGGACTCCAGGGA
CTAGGCGCTGAGATCGCAAAAAACCTTGTCCTTGCGGGTGTCAAGTCTGTAACCTTACAT
GATGATGGCAAAGTCGAGCTATGGGACTTGTCAAGCAATTTCTTCCTCTCAGAGAAGGAT
ATTGGGCAAAACCGTGCTCATGCTTGTGTTCCAAAGCTACAGGAGCTTAACAATGCTGTC
ATCATCTCTACCGTAACTGGTGATTTGACCAAGGAACAACTTTCTAACTTTCAGGCTGTG
GTCTTTACTGATATCAGCATAGAAAAAGCAGTTGAGTATGATGAATACTGTCATAGCCAC
CAGCCGCCAATTGCTTTCATTAAGTCCGAAGTTTGTGGCCTTTTTGGCAGTGTTTTCTGT
GACTTTGGTCCTGAGTTCACTGTTTTGGATGTCGATGGCGAGGAACCACATACAGGAATT
GTGGCATCAATCAGCAACGACAATCCAGCACTTGTTTCTTGTGTGGATGATGAACGTCTG
GAGTTCCAGGATGGTGATCTAGTTGTTTTCTCCGAAGTGCATGGAATGACCGAACTCAAT
GATGGAAAACCAAGAAAGATTAAGAATGCAAGGCCTTATTCTTTTACTCTAGAAGAAGAC
ACCACCTCATATGGCACTTACTTTAGAGGTGGTATTGTCACACAGGTGAAGCCACCAAAG
GTTCTTAAATTCAAAACCTTGAAGGATGCAATCAAGGAGCCAGGAGAATTTCTCATGAGT
GATTTCTCCAAGTTTGACCGGCCACCTCTTCTACATTTGGCCTTCCAAGCTTTGGACAAA
TTTAGGTCTGAGTTGGCACGATTTCCTATTGCTGGGTCAGATGATGATGCACAGAAGCTG
ATAGACCTTGCTATTAGTATTAACGAAACTCTTGGTGATAGTAAGCTTGAAGAAATTGAC
AAGAAGCTCCTGCAGCATTTCGCCAGTGGTTCCAGGGCTGTTTTGAATCCTATGGCTGCA
ATGTTTGGCGGTATTGTAGGCCAGGAGGTTGTTAAAGCATGCTCAGGGAAATTCCATCCA
CTTTACCAGTTCTTCTACTTTGATTCTGTCGAATCTCTGCCAGTTGAACCGTTGGAGCCT
AGTGATTTGAAGCCAGAGAACAGTAGACATGATGCACAAATTAGTGTCTTTGGGGCTCAG
CTTCAAAAGAAACTGGAGCAGTCAAAAATCTTCATGGTTGGTTCTGGGGCTCTTGGATGT
GAATTTTTGAAGAACCTTGCGTTAATGGGTATTTCTTGCAGTCAAAATGGGAAGCTGACT
GTGACAGATGATGATGTTATAGAGAAAAGCAATCTCAGTCGCCAGTTTCTCTTCCGTGAC
TGGAACATTGGACAGCCCAAGTCCACAGTTGCTGCAACTGCCGCTATGGCAATTAATCCC
GAGCTTCATGTGGAGGCCCTTCAGAATAGAGCAAGTCCTGAGACTGAAAATGTGTTTAAT
GATGCCTTTTGGGAGAGCTTGGATGCTGTTGTTAATGCATTGGACAATGTCACTGCAAGA
ATGTACATTGACTCTAGATGTGTATATTTCCAGAAGCCACTTCTTGAATCAGGTACTCTG
GGTGCCAAGTGCAACACACAGATGGTCATTCCTCACTTAACAGAAAACTATGGGGCATCC
AGAGATCCACCAGAAAAGCAGGCACCTATGTGCACTGTACATTCATTTCCTCACAATATT
GATCACTGCCTGACATGGGCCAGATCTGAGTTTGAGGGTCTACTTGAGAAGACTCCCACT
GAAGTAAATGCTTTTCTGTCGAACCCTGGTGGATATGCAACCACAGCAAGAACTGCTGGT
GATGCACAGGCTAGAGACCAACTTGAGCGAGTTATTGAATGCCTTGAGACAGACAAGTGT
GAGACATTCCAAGATTGTATTACCTGGGCCCGGTTGAAGTTTGAGGATTATTTCTCCAAC
CGTGTAAAGCAGCTGACATTCACTTTTCCTGAAGACGCAATGACTAGCTCTGGTGCTCCT
TTCTGGTCTGCTCCTAAGCGGTTCCCGCGACCACTGGAGTTCTCATCTTCTGACTCAAGT
CACCTTAACTTCTTGTTGGCTGCTTCTATATTAAGGGCAGAGACATTTGGAATACCCATA
CCTGGTTGGGCGAAAAACCCAAAGAAACTAGCTGAAGCTGTGGACAAGGTCATTGTTCCG
GATTTCCATCCAAAAGAGGGTGTTAAGATAGAGACAGATGAGAAGGCTACTAGCCTATCC
TCTGCGTCTGTTGATGATGCTGCCGTCATTGAAGAGCTTATTGC