Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d023220_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:10:700409:703173:-1 gene:Zm00001d023220 gene_biotype:protein_coding transcript_biotype:protein_coding description:Outer membrane OMP85 family protein
Sequence

ATGGCAAACGCATCCGACAGCGATATTCCATCCGTCACTCACGACCTCGACGAGGATGAA
GAATTCGACGACGACGACCTCGATGACGAAGACGACGATGGCGGCGAACCCCTCGCGTCC
TCATCCGAGGCGGCTCGCCTAGAGGCCGTGCTCCGGCGTCTCACCGCGGACGAGGTCCGG
ATCCGGGTGCACCAGGTCACGATCCGGGGCTGCGCCCGCACGCGCCGCGCCGCGGTCGAG
GCGGCGGTCGGCCCGGACGTGTCGCGCGCCGCCACCGTGCGGGACCTCGTGCGCGCCGCC
GCCGCCGCTGGTGACCGGCTCCGTTGCCTCGGCGCCTTCGACACAGTCTCGATCACCCTC
GACGCGGCGCCGCCCGGGATCCCTGGCAGCGCCGTCGTCGTCCTCATTGATGTTGCGGAG
GCCCGCGGCCGCGCTGCCGGTGATTTCGGCGTCTTCGCCAACACACAGAGTAGATCATGC
TCACTTGAAGGTTCAGTGAAGTTGAAGAACCTATTTGGATACTGTGAGACCTGGGATGCA
TCAGGCGCTCTTGAATTAGATAAGACAGCAGAACTAAGTGCCGGAGTCCAAATGCCTAGG
ATCGGAGCAATACCAACTCCCTTGATGGCTAGAATATCGTTTGTATCTGACGACTGGTTA
AAGTCCTCACTGAAAGAACACTTGATGGGCGTTTCTGTCGGCTTGCTCTCCACCATAAAC
CACAACATTGCTTACAATTTGACATGGAGAAAGTTAACTGATCCAACACGCATGTCATCC
AATTCTGTACAAGAGGAATTAGGACATAGCCTTTTGTCCTCTATTAAGTACGCGTACAAG
GTTGACCGAAGGGACTCAAGCATAAGACCTGCACGCGGATATGCTTTTATGTCGACTTCT
CAAGTTGGAGGGCTTGCACCAGGGAGCAAATATTCACGTTTTCTTAGGCAGGAATTTGAT
CTTCGAGTGGCTTTGCCTCTGGGTGTGCTGAATGGTGCTCTCAACGCCGGAGTGGCTGCG
GGAGTCATCCATCCATTGGAAAGGGGATCTGCAGGATCTGTCTCACCACTTGTAGAAAGA
TTTAACTTGGGTGGTAATAGGGCTCTCGTGTGCCGCTTGGGTGGACCATCTTCACTATTA
GGCTTCAAAACAAGAGGGCTACGGGCAGCAACAGAGTCCAGAACACAAGACCCCAACACT
CCTGGCAATGGCACTTCCCCTTCCCCTGAGCTAAATGGTCTTGGAGGTGAAGTAGCGGTG
ACAGCCTTCGCCGACCTGTCATTTGATCTGCCTCTGAAGCCGCTCAGGGAGCTGGGAATC
CATGGTCATGCTTTTGTCTGTGCTGGAAATCTTGGTAGATTAACGGAGTGTGATCTGCGG
AAGTTCCCTGTTACTGAATTCCTGCAGACGTTCAGAAGTTGTGCAGGATGGGGCGTAGTT
GTGCCGACCAGACTGTTCCGCGTAGAGATGAATTACTGCTACATCCTAAAACAGCTTGAT
CATGACGGGGGGAAGACAGGCATACAGTTGAACTTCTCATCCTCCTAA

Peptide Sequence

PEP ID

Zm00001d023220_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:10:700409:703173:-1 gene:Zm00001d023220 transcript:Zm00001d023220_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Outer membrane OMP85 family protein
Sequence

MANASDSDIPSVTHDLDEDEEFDDDDLDDEDDDGGEPLASSSEAARLEAVLRRLTADEVR
IRVHQVTIRGCARTRRAAVEAAVGPDVSRAATVRDLVRAAAAAGDRLRCLGAFDTVSITL
DAAPPGIPGSAVVVLIDVAEARGRAAGDFGVFANTQSRSCSLEGSVKLKNLFGYCETWDA
SGALELDKTAELSAGVQMPRIGAIPTPLMARISFVSDDWLKSSLKEHLMGVSVGLLSTIN
HNIAYNLTWRKLTDPTRMSSNSVQEELGHSLLSSIKYAYKVDRRDSSIRPARGYAFMSTS
QVGGLAPGSKYSRFLRQEFDLRVALPLGVLNGALNAGVAAGVIHPLERGSAGSVSPLVER
FNLGGNRALVCRLGGPSSLLGFKTRGLRAATESRTQDPNTPGNGTSPSPELNGLGGEVAV
TAFADLSFDLPLKPLRELGIHGHAFVCAGNLGRLTECDLRKFPVTEFLQTFRSCAGWGVV
VPTRLFRVEMNYCYILKQLDHDGGKTGIQLNFSSS

Transcript Sequence

Transcript ID

Zm00001d023220_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:700409:703173:-1 gene:Zm00001d023220 gene_biotype:protein_coding transcript_biotype:protein_coding description:Outer membrane OMP85 family protein
Sequence

GCCCATCCTGAAGTCAATCTTCAGAAGAGAAGCAAAGCAACAGACCACGCCCCATCTTTG
CTCTCAACTGCTGCCATGGCAAACGCATCCGACAGCGATATTCCATCCGTCACTCACGAC
CTCGACGAGGATGAAGAATTCGACGACGACGACCTCGATGACGAAGACGACGATGGCGGC
GAACCCCTCGCGTCCTCATCCGAGGCGGCTCGCCTAGAGGCCGTGCTCCGGCGTCTCACC
GCGGACGAGGTCCGGATCCGGGTGCACCAGGTCACGATCCGGGGCTGCGCCCGCACGCGC
CGCGCCGCGGTCGAGGCGGCGGTCGGCCCGGACGTGTCGCGCGCCGCCACCGTGCGGGAC
CTCGTGCGCGCCGCCGCCGCCGCTGGTGACCGGCTCCGTTGCCTCGGCGCCTTCGACACA
GTCTCGATCACCCTCGACGCGGCGCCGCCCGGGATCCCTGGCAGCGCCGTCGTCGTCCTC
ATTGATGTTGCGGAGGCCCGCGGCCGCGCTGCCGGTGATTTCGGCGTCTTCGCCAACACA
CAGAGTAGATCATGCTCACTTGAAGGTTCAGTGAAGTTGAAGAACCTATTTGGATACTGT
GAGACCTGGGATGCATCAGGCGCTCTTGAATTAGATAAGACAGCAGAACTAAGTGCCGGA
GTCCAAATGCCTAGGATCGGAGCAATACCAACTCCCTTGATGGCTAGAATATCGTTTGTA
TCTGACGACTGGTTAAAGTCCTCACTGAAAGAACACTTGATGGGCGTTTCTGTCGGCTTG
CTCTCCACCATAAACCACAACATTGCTTACAATTTGACATGGAGAAAGTTAACTGATCCA
ACACGCATGTCATCCAATTCTGTACAAGAGGAATTAGGACATAGCCTTTTGTCCTCTATT
AAGTACGCGTACAAGGTTGACCGAAGGGACTCAAGCATAAGACCTGCACGCGGATATGCT
TTTATGTCGACTTCTCAAGTTGGAGGGCTTGCACCAGGGAGCAAATATTCACGTTTTCTT
AGGCAGGAATTTGATCTTCGAGTGGCTTTGCCTCTGGGTGTGCTGAATGGTGCTCTCAAC
GCCGGAGTGGCTGCGGGAGTCATCCATCCATTGGAAAGGGGATCTGCAGGATCTGTCTCA
CCACTTGTAGAAAGATTTAACTTGGGTGGTAATAGGGCTCTCGTGTGCCGCTTGGGTGGA
CCATCTTCACTATTAGGCTTCAAAACAAGAGGGCTACGGGCAGCAACAGAGTCCAGAACA
CAAGACCCCAACACTCCTGGCAATGGCACTTCCCCTTCCCCTGAGCTAAATGGTCTTGGA
GGTGAAGTAGCGGTGACAGCCTTCGCCGACCTGTCATTTGATCTGCCTCTGAAGCCGCTC
AGGGAGCTGGGAATCCATGGTCATGCTTTTGTCTGTGCTGGAAATCTTGGTAGATTAACG
GAGTGTGATCTGCGGAAGTTCCCTGTTACTGAATTCCTGCAGACGTTCAGAAGTTGTGCA
GGATGGGGCGTAGTTGTGCCGACCAGACTGTTCCGCGTAGAGATGAATTACTGCTACATC
CTAAAACAGCTTGATCATGACGGGGGGAAGACAGGCATACAGTTGAACTTCTCATCCTCC
TAATTTGTAAGATGAAACCAAACAGAGCCCTAGTGGTAACAAAGCTCCTTGTAAACATCT
CAATGGCAAACCTCAAAAAACCGGATTTATTAATAAAAAATAAGGTCAAAAACCGGATGT
GAAAGATTACGTAAAAAAAAAACCGGAGTTCTTTAGACTT