Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d022599_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:7:180824817:180834362:1 gene:Zm00001d022599 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plastid transcriptionally active chromosome 2 homolog description: plastid transcriptionally active chromosome 2 homolog
Sequence

ATGGCGCTCGTGTCCACCGCCACCGTCGCGTCGTCGTCCTACCACTGCGACCCCCACCTC
TTCCCAGGGGCCAGGAGGAGCTGGCGCGAGCCGAGGTGGAGCCGCGGCGGCGCGGGCGCG
AGGCTAGCGGTGCTGCAGCGTGCGGGCGGCGGCGGGCTCGCGGTGCTGGAGCGAGCGGGC
GCGGGTGCGGGGTCCGCGGTGCTAGAGCGGGCGGGGGGCGCCGCGGCGGCCGCGGCGAGG
AGGGAGGAGCTGGTGCCCTCGGGGAATGCGAGGAACTCGTACGAGGTGGAGTCACTGATC
GACCGGCTGAGCAACCTGCCGCCGCGGGGCTCCATCGCGCGCTGCCTTGAGACAGCGCGG
CACCGGCTGACGCTGCAGGACTTCGCGGCGGTGTACCGCGAGTTCTCCCGCCGCGGGGAC
TGGCAGCGCTCGCTCCGGCTCTTCAAGTACATGCAGCGCCAGTCGTGGTGCCGCCCCGAC
GAGCACATACACGCCATCGTCATCGGCGTGCTCGGGCGCCAGGGCCCCGCGCTGCTCGAC
AAGTGCCTCGAGGTGTTCCACGACCTCCCCGCCGAGTCGCGCACTGCGCTCTCCTATACC
TCCCTCATCGCCGCCTACGCGCGCAACGCGCTGCACGAGGAGGCCCGCGCGCTGCTCGAC
CAGATGAAGGCCACGGGGGTCGCGCCCACCGCCGCCACCTACAACACCGTGCTCGCCGCC
TGCGCCCGCGCCACCGACCCACCCGTCCCCTTCGACATGCTCCTCGGCCTGTTCGCTGAG
ATGCGGCACGACGCGTCCCCCTCCGTGCGCCCCGACCTTACCACCTACAACACCCTCCTT
GCCGCCGCCGCCGTGCGCTCTCTGGCTGATCAGTCTGAAATGCTGCTGCACACTATGCTT
GAGGCCGGCGTCTCCCCGGACACTGTTTCTTATCGTCACATTGTGGATGCCTTTGCCAGT
GCCGGCAACCTCTCCCGTGCAGCCGAGCTATTCTCCGAAATGGCAGCCACGGGGCACACG
GCGGATGCCTCTGCTTATTTGGGACTCATGGAAGCACACACGCGTGTTGGCGCCACTGCT
GATGCGGTGGCTGTGCTGCGACAGATGCAGGCTGATGGATGTGCGCCAACAGCTGCCACT
TACCGTGTCCTGCTCGATCTTTATGGAAGGCAGGGGCGGTTTGATGGAGTGCGCCAACTC
TTCCGTGAGATGAGAACTGCTGTACCGCCAGACACGGCCACATATAATGTGCTTTTCCGT
GTATTCGGAGATGGTGGCTTCTTCAAGGAGGTGGTGGAGCTCTTCCATGATATGCTTAAA
ACTGGGGTACAGCCTGATATGGTGACCTGCGAAAATGTCATGGCTGCCTGTGGTCACGGT
GGCCTCCATGGGGATGCAAGAGAAGTTCTTGAATATATGACCAGAGAAGGAATGGTGCCT
ACTGCAGATGCCTACACTGGCCTGGTTGAGGCCCTTGGCCACGCAGCTATGTATGAGGAA
GCCTATGTTGCTTTCAACATGATGACTGAAATCGGTAGCTTGCCAACTCTTGAGACCTAC
AATGCTCTTGCATTTGCATATGCTAGGGGTGGGCTCTTCCAGGAGGCTGAGGCCATCTTT
TCTCGGATGAGTAACAATGCTGGCATTCAGAAAAGCAAAGACTCATTTGACGCCCTCATC
GAAGCATATTGCCAGGGCTCCCGATTGGATGATGCAGTGAAGGCGTACATGGAGATGCGT
AAATCCAGGTTTAATCCAGATGAGCGGTCCCTTGAGGGAGTACTTAATGCCTACTGCATA
GCAGGGGTCATAGATGAGAGTAAAGAACAGTTTGAAGAACTTCAATCTAGTGTGACTATG
CCCAGCGTTATTGCCTATTGCATGATGCTGTCACTATATGCCAGGAATGACAGGTGGACT
GACGCGTACGATCTGCTGGAAGAAATGAAAACAAATCGTGCTAGTAGTACACATCAAGTA
ATTGCTTCCCTAATCAAAGGGGAATATGATGATAGCTCCAACTGGCAAATGGTTGAATAT
GTCCTCGAAAACAGTACCATGGAAGGCTGTGACTATAGTTTCCGATTCTTTAATGCTCTC
CTTGGTGTGCTTTGGTGGTTTGGTCAGAAGGGCCGAGCTGCTAGAGTTCTGGATCAAGCA
GTAAAATTTGGGCTGTTCCCTGAGTTATATCGTGACACCAAACTGGTTTGGTCACTAGAT
GTACATAGTTTGCATTTCAGGATGTCGATGGGTGGAGCACTGGTGGCTGTGTCAGTATGG
CTCAATAAGCTTTATGACAGACTAGTAGAAGATGAAGATCTTCCACAGTTAGCATCTGTT
GTTGTATTGAGAGGAGAAATGGAGAAAAGCACAGTTACAAGAGGACTGCCAATCGCCAAA
GTCGTCTACTCCTTTCTAAACGATACACTATCAGCGTCCTTCCATTTTCCAAAATGGAAC
AAGGGACGAATCATATGCTTGAAGTCCCAACTAAAAAGGCTGCAGTCGGCCGTAGACTCC
TCAAATGGGTCTCTTGCAGCTGGTTTTGTCGACATGACAAACTCCCGTCTGCCGGCTCCC
GGTTCCAAGATATACACAAGCGAGGACCAATTGGATAATGGTTCACGCCATTTGCCTGAC
GAACCGTTGGCGGAGGAAAAGGAGTCGGAGCTTCTCGCACTGTGA

Peptide Sequence

PEP ID

Zm00001d022599_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:7:180824817:180834362:1 gene:Zm00001d022599 transcript:Zm00001d022599_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plastid transcriptionally active chromosome 2 homolog description: plastid transcriptionally active chromosome 2 homolog
Sequence

MALVSTATVASSSYHCDPHLFPGARRSWREPRWSRGGAGARLAVLQRAGGGGLAVLERAG
AGAGSAVLERAGGAAAAAARREELVPSGNARNSYEVESLIDRLSNLPPRGSIARCLETAR
HRLTLQDFAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGRQGPALLD
KCLEVFHDLPAESRTALSYTSLIAAYARNALHEEARALLDQMKATGVAPTAATYNTVLAA
CARATDPPVPFDMLLGLFAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLHTML
EAGVSPDTVSYRHIVDAFASAGNLSRAAELFSEMAATGHTADASAYLGLMEAHTRVGATA
DAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRQLFREMRTAVPPDTATYNVLFR
VFGDGGFFKEVVELFHDMLKTGVQPDMVTCENVMAACGHGGLHGDAREVLEYMTREGMVP
TADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNALAFAYARGGLFQEAEAIF
SRMSNNAGIQKSKDSFDALIEAYCQGSRLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCI
AGVIDESKEQFEELQSSVTMPSVIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQV
IASLIKGEYDDSSNWQMVEYVLENSTMEGCDYSFRFFNALLGVLWWFGQKGRAARVLDQA
VKFGLFPELYRDTKLVWSLDVHSLHFRMSMGGALVAVSVWLNKLYDRLVEDEDLPQLASV
VVLRGEMEKSTVTRGLPIAKVVYSFLNDTLSASFHFPKWNKGRIICLKSQLKRLQSAVDS
SNGSLAAGFVDMTNSRLPAPGSKIYTSEDQLDNGSRHLPDEPLAEEKESELLAL

Transcript Sequence

Transcript ID

Zm00001d022599_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:180824817:180834362:1 gene:Zm00001d022599 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plastid transcriptionally active chromosome 2 homolog description: plastid transcriptionally active chromosome 2 homolog
Sequence

GGTCAGCCCGCAGGAGAGTGCGCGCTGCGACTCTATCCACTTCCCCCGGAGACCGGAGGC
AAAAATCTCCCCTCCCCCAAAATCCTAGGCGTGGTGAAATCCTAAACCCGCTCCGCGGGC
GGCGATGGCGCTCGTGTCCACCGCCACCGTCGCGTCGTCGTCCTACCACTGCGACCCCCA
CCTCTTCCCAGGGGCCAGGAGGAGCTGGCGCGAGCCGAGGTGGAGCCGCGGCGGCGCGGG
CGCGAGGCTAGCGGTGCTGCAGCGTGCGGGCGGCGGCGGGCTCGCGGTGCTGGAGCGAGC
GGGCGCGGGTGCGGGGTCCGCGGTGCTAGAGCGGGCGGGGGGCGCCGCGGCGGCCGCGGC
GAGGAGGGAGGAGCTGGTGCCCTCGGGGAATGCGAGGAACTCGTACGAGGTGGAGTCACT
GATCGACCGGCTGAGCAACCTGCCGCCGCGGGGCTCCATCGCGCGCTGCCTTGAGACAGC
GCGGCACCGGCTGACGCTGCAGGACTTCGCGGCGGTGTACCGCGAGTTCTCCCGCCGCGG
GGACTGGCAGCGCTCGCTCCGGCTCTTCAAGTACATGCAGCGCCAGTCGTGGTGCCGCCC
CGACGAGCACATACACGCCATCGTCATCGGCGTGCTCGGGCGCCAGGGCCCCGCGCTGCT
CGACAAGTGCCTCGAGGTGTTCCACGACCTCCCCGCCGAGTCGCGCACTGCGCTCTCCTA
TACCTCCCTCATCGCCGCCTACGCGCGCAACGCGCTGCACGAGGAGGCCCGCGCGCTGCT
CGACCAGATGAAGGCCACGGGGGTCGCGCCCACCGCCGCCACCTACAACACCGTGCTCGC
CGCCTGCGCCCGCGCCACCGACCCACCCGTCCCCTTCGACATGCTCCTCGGCCTGTTCGC
TGAGATGCGGCACGACGCGTCCCCCTCCGTGCGCCCCGACCTTACCACCTACAACACCCT
CCTTGCCGCCGCCGCCGTGCGCTCTCTGGCTGATCAGTCTGAAATGCTGCTGCACACTAT
GCTTGAGGCCGGCGTCTCCCCGGACACTGTTTCTTATCGTCACATTGTGGATGCCTTTGC
CAGTGCCGGCAACCTCTCCCGTGCAGCCGAGCTATTCTCCGAAATGGCAGCCACGGGGCA
CACGGCGGATGCCTCTGCTTATTTGGGACTCATGGAAGCACACACGCGTGTTGGCGCCAC
TGCTGATGCGGTGGCTGTGCTGCGACAGATGCAGGCTGATGGATGTGCGCCAACAGCTGC
CACTTACCGTGTCCTGCTCGATCTTTATGGAAGGCAGGGGCGGTTTGATGGAGTGCGCCA
ACTCTTCCGTGAGATGAGAACTGCTGTACCGCCAGACACGGCCACATATAATGTGCTTTT
CCGTGTATTCGGAGATGGTGGCTTCTTCAAGGAGGTGGTGGAGCTCTTCCATGATATGCT
TAAAACTGGGGTACAGCCTGATATGGTGACCTGCGAAAATGTCATGGCTGCCTGTGGTCA
CGGTGGCCTCCATGGGGATGCAAGAGAAGTTCTTGAATATATGACCAGAGAAGGAATGGT
GCCTACTGCAGATGCCTACACTGGCCTGGTTGAGGCCCTTGGCCACGCAGCTATGTATGA
GGAAGCCTATGTTGCTTTCAACATGATGACTGAAATCGGTAGCTTGCCAACTCTTGAGAC
CTACAATGCTCTTGCATTTGCATATGCTAGGGGTGGGCTCTTCCAGGAGGCTGAGGCCAT
CTTTTCTCGGATGAGTAACAATGCTGGCATTCAGAAAAGCAAAGACTCATTTGACGCCCT
CATCGAAGCATATTGCCAGGGCTCCCGATTGGATGATGCAGTGAAGGCGTACATGGAGAT
GCGTAAATCCAGGTTTAATCCAGATGAGCGGTCCCTTGAGGGAGTACTTAATGCCTACTG
CATAGCAGGGGTCATAGATGAGAGTAAAGAACAGTTTGAAGAACTTCAATCTAGTGTGAC
TATGCCCAGCGTTATTGCCTATTGCATGATGCTGTCACTATATGCCAGGAATGACAGGTG
GACTGACGCGTACGATCTGCTGGAAGAAATGAAAACAAATCGTGCTAGTAGTACACATCA
AGTAATTGCTTCCCTAATCAAAGGGGAATATGATGATAGCTCCAACTGGCAAATGGTTGA
ATATGTCCTCGAAAACAGTACCATGGAAGGCTGTGACTATAGTTTCCGATTCTTTAATGC
TCTCCTTGGTGTGCTTTGGTGGTTTGGTCAGAAGGGCCGAGCTGCTAGAGTTCTGGATCA
AGCAGTAAAATTTGGGCTGTTCCCTGAGTTATATCGTGACACCAAACTGGTTTGGTCACT
AGATGTACATAGTTTGCATTTCAGGATGTCGATGGGTGGAGCACTGGTGGCTGTGTCAGT
ATGGCTCAATAAGCTTTATGACAGACTAGTAGAAGATGAAGATCTTCCACAGTTAGCATC
TGTTGTTGTATTGAGAGGAGAAATGGAGAAAAGCACAGTTACAAGAGGACTGCCAATCGC
CAAAGTCGTCTACTCCTTTCTAAACGATACACTATCAGCGTCCTTCCATTTTCCAAAATG
GAACAAGGGACGAATCATATGCTTGAAGTCCCAACTAAAAAGGCTGCAGTCGGCCGTAGA
CTCCTCAAATGGGTCTCTTGCAGCTGGTTTTGTCGACATGACAAACTCCCGTCTGCCGGC
TCCCGGTTCCAAGATATACACAAGCGAGGACCAATTGGATAATGGTTCACGCCATTTGCC
TGACGAACCGTTGGCGGAGGAAAAGGAGTCGGAGCTTCTCGCACTGTGAGCTGCTGCCCT
TCGCATCTACAGTTGTGATGCCATTGGTCTGAACAAGGGGAGACGAGATGCAGGATACCA
AGCGTATTTTCGGAGTTCGTCCATTCAGATCTCCGTCTCGGTCTCAGTTATCCAGGGTGG
GTGCTACATACTGCAGATTCACATCTTGCCTGGAATTTATTTGGCTGGGGCTTGACAGTC
AATGCTGAACTTGAGTTGCATTTCAGGCAGGATTTTAGCTCGTTGTAGGGAGAACGAGCT
TATGGATGTTGTTGACTGTGTATGGCATCCTTGTGCGTCCAGCTCAAGTGCTCAACTCTG
TAAAACATGATAGCCTGATAAGTCTGTTGATACGATCTGAATCCTGATGATGGGGATAGT
GCCTGTAGTGTGATTTGTATTATTACCAGCTGAGTGACCATCTGTTGCTTGCTACTAATA
AATCTCTCTTTATTAAAAGCTCCTACCATTTCCTCGCACCAGGAGGCTCCGCCG