Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d022581_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:7:180314845:180322630:1 gene:Zm00001d022581 gene_biotype:protein_coding transcript_biotype:protein_coding description:AMP deaminase
Sequence

ATGGACTCCCCCTACGCTCTCCACCTCGCCATCGCCGCGCTCGTCGGCGCCTCCTTCGCC
GCCGCCTCCGCCTACTACATGCACCGCAAGACCCTCGACCAGCTTCTCCGTTTCGCCCGC
GACCAGCAGCGCCGCCGCAACCGCCTCCTCCCCGAAGGCGACGAACTGGAGGACGGCGAA
GAGGACCCTCCGCCGCACTGGGATCATGATCGCCGCACCCTGCCCATCCCGCCGGGCCTC
CCGCCGCTCCACACCGGCCGAGAGGGTTGTAGGCCAGTTGTTTCTCCAGGTTCGACTAAA
AGAGTTGGACCTATTGTTAGACCGACTACACCCAAATCCTCTGTCCCCACTATCAGTGCA
TTTGATAGAATTGAAGATTCAGATGACGAGGAGGATCTTGTCCCAGATGCCAAGAATGAT
ACTGCTTACTTGACCCCAAATGGTGCTATTGGATCAGATCTCACAGATAAAGCGAGCCAG
AATGGGGAATTAACATCAGCACCATCAACGCAGATGATTAGATCCCATAGTGCAACTGGC
AGCCTGCATGTACCCCAGCTTAACCCAATAGCAGCTGATATACTTCGAAAGGAGCCTGAA
CATGAAACCTTCAGTAAAATCAATATCACAGCTGTTGAGACTCCTTCTCCTGATGAAATT
GAGGCATACAAAGTTCTTCAGAAATGCCTTGAGCTGCGTCAGAGGTACATATTCAGAGAA
GAAGTTGCTCCTTGGGAAAAAGAGATCATAACTGATCCTAGTACTCCAAAGCCTAATCCA
AATCCGTTCAGTTATGAACATCAGGCTAAAACCGATCACCATTTCGAAATGGTTGATGGC
GTCATTCATGTGTACCCCAATAAAGATTCTAAAGAAAGACTCTATCCAGTTGCCGATGCA
ACTACCTTCTTTACTGATATGCACTACGTCCTTCGTGTGTTGGCTGCTGGGGATATCCGA
ACCGTGTGTCATCACCGTTTAAATCTTCTAGAGCAAAAATTTAATCTTCACTTGATGGTC
AATACGGATAGAGAACTGCTTGCTCAGAAAGCTGCACCTCACCGGGACTTCTACAATGTT
AGGAAGGTTGATACTCATGTTCATCACTCAGCATGCATGAACCAGAAGCACCTGTTGAGA
TTTATCAAGTCTAAGTTGAGGAAGGAACCTGATGAGGTTGTAATCTTTAGAGATGGGACC
TATTTGACTCTTAAGGAGGTTTTTGAGAGTTTGGATTTGACAGGGTATGACCTCAATGTT
GATCTCTTAGATGTTCATGCTGATAAGAGTACATTTCATCGTTTTGACAAGTTCAATCTG
AAATATAATCCATGTGGTCAATCTCGCCTGAGGGAGATATTTTTAAAGCAGGATAATCTT
ATTCAAGGTCGCTTCCTTGCTGAGCTGACAAAAGAAGTATTTTCTGACCTTGAAGCAAGT
AAATATCAGATGGCTGAGTATCGGATATCTATTTATGGGAGGAAGAAAAGCGAATGGGAC
CAAATGGCAAGTTGGATAGTGAACAATGAATTATATAGCGAGAATGTTGTTTGGTTAATT
CAGATTCCTCGGATATACAATGTATACAGGGAGATGGGCACAATCAATTCTTTCCAAAAC
CTCCTTGACAATATTTTTCTCCCTCTTTATGAAGTAACTGTTGACCCAGCTTCACATCCT
CAGCTCCATGTTTTCTTAAAACAGGTTGTTGGGTTGGATTTGGTGGATGATGAAAGCAAA
CCTGAAAGACGCCCAACAAAACACATGCCAACACCTGAGCAATGGACTAATATTTTCAAT
CCAGCCTATGCGTATTATGTGTACTATTGCTATGCCAATCTGTATACACTGAACAAGCTT
CGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCACACTGTGGGGAGGCTGGTGAT
ATCGATCACCTTGCTGCAGCATTTCTTACTTCACATAACATTGCTCATGGGGTGAACCTA
AAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGATTGGTCTAGCAATGTCT
CCCTTAAGTAACAACTCACTGTTTATCGACTATCATCGGAACCCTTTCCCAACATTTTTC
TTAAGGGGTCTTAACGTGTCTCTTTCGACTGACGACCCTCTACAAATTCACCTGACGAAG
GAACCTTTGGTTGAAGAATACAGTGTTGCTGCTTCACTTTGGAAGCTGAGCTCATGTGAC
TTGTGTGAAATCGCTAGAAATTCTGTCTACCAGTCCGGATTCTCTCACAGGCTCAAGTCT
CACTGGATCGGGAGAAACTACTACAGAAGGGGTCCGGAGGGCAATGACATCCACCAGACA
AATGTTCCTCACATCAGGGTTGAATTTCGACACACTATCTGGAAAGAAGAAATGGAGCTG
ATACATTTTGGAAATGTTAACCTACCCGAAGAAGTTGACAGGTGA

Peptide Sequence

PEP ID

Zm00001d022581_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:7:180314845:180322630:1 gene:Zm00001d022581 transcript:Zm00001d022581_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:AMP deaminase
Sequence

MDSPYALHLAIAALVGASFAAASAYYMHRKTLDQLLRFARDQQRRRNRLLPEGDELEDGE
EDPPPHWDHDRRTLPIPPGLPPLHTGREGCRPVVSPGSTKRVGPIVRPTTPKSSVPTISA
FDRIEDSDDEEDLVPDAKNDTAYLTPNGAIGSDLTDKASQNGELTSAPSTQMIRSHSATG
SLHVPQLNPIAADILRKEPEHETFSKINITAVETPSPDEIEAYKVLQKCLELRQRYIFRE
EVAPWEKEIITDPSTPKPNPNPFSYEHQAKTDHHFEMVDGVIHVYPNKDSKERLYPVADA
TTFFTDMHYVLRVLAAGDIRTVCHHRLNLLEQKFNLHLMVNTDRELLAQKAAPHRDFYNV
RKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNV
DLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKEVFSDLEAS
KYQMAEYRISIYGRKKSEWDQMASWIVNNELYSENVVWLIQIPRIYNVYREMGTINSFQN
LLDNIFLPLYEVTVDPASHPQLHVFLKQVVGLDLVDDESKPERRPTKHMPTPEQWTNIFN
PAYAYYVYYCYANLYTLNKLRESKGMTTIKLRPHCGEAGDIDHLAAAFLTSHNIAHGVNL
KKSPVLQYLYYLAQIGLAMSPLSNNSLFIDYHRNPFPTFFLRGLNVSLSTDDPLQIHLTK
EPLVEEYSVAASLWKLSSCDLCEIARNSVYQSGFSHRLKSHWIGRNYYRRGPEGNDIHQT
NVPHIRVEFRHTIWKEEMELIHFGNVNLPEEVDR

Transcript Sequence

Transcript ID

Zm00001d022581_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:180314845:180322630:1 gene:Zm00001d022581 gene_biotype:protein_coding transcript_biotype:protein_coding description:AMP deaminase
Sequence

GCATTCGACGCCGCCGCAGGCCCGCAGCCAGCTCGAGCCCAAAGGAGAGAACCCAGGTTG
GCGGCGGCGCTCCGGCGGCGATGGACTCCCCCTACGCTCTCCACCTCGCCATCGCCGCGC
TCGTCGGCGCCTCCTTCGCCGCCGCCTCCGCCTACTACATGCACCGCAAGACCCTCGACC
AGCTTCTCCGTTTCGCCCGCGACCAGCAGCGCCGCCGCAACCGCCTCCTCCCCGAAGGCG
ACGAACTGGAGGACGGCGAAGAGGACCCTCCGCCGCACTGGGATCATGATCGCCGCACCC
TGCCCATCCCGCCGGGCCTCCCGCCGCTCCACACCGGCCGAGAGGGTTGTAGGCCAGTTG
TTTCTCCAGGTTCGACTAAAAGAGTTGGACCTATTGTTAGACCGACTACACCCAAATCCT
CTGTCCCCACTATCAGTGCATTTGATAGAATTGAAGATTCAGATGACGAGGAGGATCTTG
TCCCAGATGCCAAGAATGATACTGCTTACTTGACCCCAAATGGTGCTATTGGATCAGATC
TCACAGATAAAGCGAGCCAGAATGGGGAATTAACATCAGCACCATCAACGCAGATGATTA
GATCCCATAGTGCAACTGGCAGCCTGCATGTACCCCAGCTTAACCCAATAGCAGCTGATA
TACTTCGAAAGGAGCCTGAACATGAAACCTTCAGTAAAATCAATATCACAGCTGTTGAGA
CTCCTTCTCCTGATGAAATTGAGGCATACAAAGTTCTTCAGAAATGCCTTGAGCTGCGTC
AGAGGTACATATTCAGAGAAGAAGTTGCTCCTTGGGAAAAAGAGATCATAACTGATCCTA
GTACTCCAAAGCCTAATCCAAATCCGTTCAGTTATGAACATCAGGCTAAAACCGATCACC
ATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATTCTAAAGAAAGAC
TCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATATGCACTACGTCCTTCGTGTGT
TGGCTGCTGGGGATATCCGAACCGTGTGTCATCACCGTTTAAATCTTCTAGAGCAAAAAT
TTAATCTTCACTTGATGGTCAATACGGATAGAGAACTGCTTGCTCAGAAAGCTGCACCTC
ACCGGGACTTCTACAATGTTAGGAAGGTTGATACTCATGTTCATCACTCAGCATGCATGA
ACCAGAAGCACCTGTTGAGATTTATCAAGTCTAAGTTGAGGAAGGAACCTGATGAGGTTG
TAATCTTTAGAGATGGGACCTATTTGACTCTTAAGGAGGTTTTTGAGAGTTTGGATTTGA
CAGGGTATGACCTCAATGTTGATCTCTTAGATGTTCATGCTGATAAGAGTACATTTCATC
GTTTTGACAAGTTCAATCTGAAATATAATCCATGTGGTCAATCTCGCCTGAGGGAGATAT
TTTTAAAGCAGGATAATCTTATTCAAGGTCGCTTCCTTGCTGAGCTGACAAAAGAAGTAT
TTTCTGACCTTGAAGCAAGTAAATATCAGATGGCTGAGTATCGGATATCTATTTATGGGA
GGAAGAAAAGCGAATGGGACCAAATGGCAAGTTGGATAGTGAACAATGAATTATATAGCG
AGAATGTTGTTTGGTTAATTCAGATTCCTCGGATATACAATGTATACAGGGAGATGGGCA
CAATCAATTCTTTCCAAAACCTCCTTGACAATATTTTTCTCCCTCTTTATGAAGTAACTG
TTGACCCAGCTTCACATCCTCAGCTCCATGTTTTCTTAAAACAGGTTGTTGGGTTGGATT
TGGTGGATGATGAAAGCAAACCTGAAAGACGCCCAACAAAACACATGCCAACACCTGAGC
AATGGACTAATATTTTCAATCCAGCCTATGCGTATTATGTGTACTATTGCTATGCCAATC
TGTATACACTGAACAAGCTTCGTGAGTCCAAGGGCATGACAACAATCAAACTTCGTCCAC
ACTGTGGGGAGGCTGGTGATATCGATCACCTTGCTGCAGCATTTCTTACTTCACATAACA
TTGCTCATGGGGTGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTC
AGATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATCATCGGA
ACCCTTTCCCAACATTTTTCTTAAGGGGTCTTAACGTGTCTCTTTCGACTGACGACCCTC
TACAAATTCACCTGACGAAGGAACCTTTGGTTGAAGAATACAGTGTTGCTGCTTCACTTT
GGAAGCTGAGCTCATGTGACTTGTGTGAAATCGCTAGAAATTCTGTCTACCAGTCCGGAT
TCTCTCACAGGCTCAAGTCTCACTGGATCGGGAGAAACTACTACAGAAGGGGTCCGGAGG
GCAATGACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTATCT
GGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCGAAGAAGTTGACA
GGTGAAGAGCAGGGGAATTGCAGTGAAGTCTGGCGGTGGCGGCAAGGGGACGAGAGAATG
TGTCAACACGAGAGACTCGTTTGCTTGCAGAGGAGGTATCATGACAATGGATGTCGCCAA
GTCCTCCGTGTCGACCATATATATATGAAGAATAATAAGAAAACACAAATACCCAAGTAT
TTAGAAGCGTTGAATCCAGATGTGGCATGAGGTCGGAGCCAACGTGTACTTGCATACGTT
ACGTTTATATACATGTACTGCTCTGCTGTAATGGTGTTTCGACGAATGTGTCTTGTCATT
AATGTTTTGTTAGGCTCGTTCCAGGCTTCTGCTGATATATACGTTACGTTCAGGCCCGAA
CTAGGTTTGGGTTTTCGCTTTCGCTACTCGTAGGAAATGTTTAAGTACCGGACTTCATGC
TATA