Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d022576_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:7:180275844:180280398:1 gene:Zm00001d022576 gene_biotype:protein_coding transcript_biotype:protein_coding description:SNF2 domain-containing protein CLASSY 1
Sequence	ATGGTCAAGGGATCCACAGGCCACCACAGCAACCCCATCGCTCCAGTCCCGTTTGAGGCG TTTCATAACGGATCATGGCATGGAGCCAATTCTATAATGATACGGGATGGTGGTTTGCTT GTAAAATTTGTCTCCTCTGGATACGCAGTCGCAGTCCAGCATGATATTGATGGGTCCTAT CTGCGCGTTCGTTCTAGAAAGGCAACTTGCTCGGATTGCTCACATGTTCTCAAGCCAGGC GCCGATGTTTGTGTATGGCAAGCAGTTTACAGAGGAGAAACAAAAGATTCTGTACTGTTG TGCTGCCGTGATGCAAGGCTCATCAAAATCAAGAGAAACCATCAATCGGACCGGTGCCTA TGCTTGTTTGCCGTTATTTTCTACAAAGACCAGTGCCCAGGCAGCAAAGAAAAAGTGATA TCCGGTACAATAGCTGACGTAGTGACGATAGACGACATCTGCATCTTGCAGAATCTCCAA CCTGAGGAGCTCCAGGATGGGAGCGTGCGATGGAATTCTGCAGTGGACTGCTTCCATCAT AACAGAAGCAAGCTGCTAAGTGCAAGATTCTCCCTGGAAGTCGCATACCTCATAGTTTTG TCTAGCCTGAGGAGAATGGAATTCAACATCAAGATGGTCGACGGCAACATCATTTACCAG ATCATCAAAGGAGACCAAGCACGGGATAGTATTGATTCCATGAGCATACCTCCAGGTTTT GGGAAGAACATGGACATAATATCATTCAAACCACGTGGTGAGGCTTTACGCCCAATTACC AGAACAGTTCCAGTCACTCAGGTTGAAGAAGGCAATCTCACAGAAGATGGGTGTATCGCC GTGAAGGGAGAATCTGATAGTGCACAAGATGTCGAGATCTTGTATGCGCATGTGGACATA AGACGCTCAAAGCGTATGAAAACTCAACCAGATCGCTTTACTAGTTATGATGCGCGTAAT TTCAACCGGACCTACAACAAGAAAGAAGCAGATGGACCATCTACTAAGTATGAAGATTCG GAGAGCGGCTTGAGTTGTGATTCATCAGAGCAGAGAGAATCAAGTGATGAAGAGGCCTTA GAAAATCCAAGGTCTATGGCAGCCGAGCACAAGTACCCAGTGAAAAGAAATCAGTGCTCT TTGCCTGTAAAAGAGAAACAGATCTCAATGGAAATAAAGAAGAACACAACAGACCAAGGG TGTTCAGATTCTTACATTCCACATACGCCAGCAAAGAATACAGAGCGTCCGAGGTTTCGA CTAAAGCCATTTGCTTCGTCTCGAAGCCTAGATGGCAATAGTGAACCAGCATTCTGCCAA AAGAGGGGTAGGAAAAGAAAGAAACACATGTGCCAAATAGAGTACAAGCGAATGATAGAC CAATGCATCGGAAATATCCAGTGTGAAGTGGAGAGAGATTCTGACTTTAAGTTTGGTGAC CAGATATTGGATGGCTGTGTACGTGCTTACCAAGAAGTGGATTTTACGTGGCCATCTTCC GCTGATAGTCAAGAGGAGAAGGATGAGCTTGACGAATTGTGGAAAGAAATGGACTATGCA CTGGCCACAGTAGCAATTCTTGAACAAAAGCAGATGACAGATTCAGAAGTCGTTCATGAG AGCAATACTGATTTAGGAAAAGGAGGAGAGCACTGTCATCATGACTGCATGCTGGACGAA CAGCTTGGTCTGACCTGCAGACTGTGCAATGTTGTATGCATTGAGGCAAAGGATATCTTT CCACCAATGTTCACTGGTAAGGACCACGAGAGGCCTGAAAGGAACCATTTTGGCCAGGAT GGTCATGTACTTGACCTTTCCTTTTTTGAGATTTGTGCTCCAGAATTCTCCAAAATCAAG GAATCTGGGAATGTGTGGGCTTCAATCACTGATCTTGAACCAAAGTTACTTGCTCATCAG AGAAAAGCCTTCGAATTTATATGGAAAAACTTGGCAGGATCATTACAGCTTGAAGAAATG GATGGTTCAACAAGTAGAGGTGGTTGTGTGGTTGCACATACTCCAGGAGCGGGTAAAACT CTTCTGCTGATTTCGTTTCTTGTCAGTTACTTGAAAGTTCACCCAAGAAGCCGGCCATTG GTCCTTACTCCAAAAGCTGCAATCCATACCTGGAGGACAGAGTTTCAGAAATGGGGCATC CTGCTTCCGTTACATGTGCTTCACCACTCTAACAGAACAAGCAAACTGATGGGGGGTCTT AGTTCGAAACTGCAGGCGGTTTTGAAGAGTTTCCACCAGCCATCGTGGAAAACAATGCGC ATCATGCATTGTCTGGACAAACTATGCAAGTGGCATGAGGAACCAAGCATTCTTCTCATG ACGTATTCTTCCTTCTTATCGCTTACGAAAGAAGACTCAAAACTGCGTCATCAGGCGTTC ATAACGAAAGTTTTGATGAACAACCCCGGGCTATTGATTCTTGATGAAGGGCACAACCCA AGGAGCAACAAATCAAAGTTGAGAAAGTTGCTGATGAAGGTGAAGACTGAATTCAGGATA CTCTTGTCTGGCACGGTCTTTCAGAACAACTTTGAAGAGTACTTCAACACCTTGTCTTTG GCCAGACCTCGTTTTGTCAACGACGTTATGACCACGCTGGTTACAGAATCAGAAAAGAGA ACACGGAGCCGAACCGGCAAACATCAAGAAGCACTGGCAAGGCATGTTTTTGTGGAAAGA GTGGGGCACAAGATAGAGTCTAGCAGCAAACATGACAGGATGGATGGCATCTCCTTGTTA AATGAGCTTACTCAAGGATTCATCGATTCGTTCGAAGGTACAAAACTGAACATTCTTCCG GGTATACGTGTTTATACCCTTTTCATGAAACCCACCGACGTCCAGGAAGAGGTACTGGCG AAACTGCTGATGCCCTTGTCAGGCAATGCGCGTTACCCTCTCGAGTATGAGCTGCTCATC ACAATTGCTTCTATCCATCCTTGGCTTATAAACACAACCAAGTGTGCTAGCACTTACTTC ACCCCAGCAGAAGTAGCTAGCGTTGACAAGTACAAGCGGAACTTTGCTGCTGGTTGCAAG GCAAAGTTTGTGATTGATCTGTTGCACAAGTCCTCGTTCAGAGGGGAGAGGGTTCTGGTA TTTTGCCACAACGTGGCCCCGATAGCCTTCCTGGTCACGCTCATAGAGATCGTCTTTGGA TGGCGCCTTGGGCAGGAAGTCCTGGTGCTGCAGGGAGACCAAGAACTGCATGTGCGGTCA GATGTCATGGATAAATTCAACAGCGACAGAAGAGGGAAGAGGAAGGTGCTGATTGCTTCA ACTACAGCCTGTGCCGAGGGTATCAGTCTCACCGGCGCGTCCAGACTGGTGATGCTTGAT TCGGAGTGGAACCATTCCAAGACAAGGCAGGCAATCGCGAGGGCGTTCCGGCCTGGCCAG GAGAGGATGGTGTTTGTCTACCTTCTTGTGGCGTCTGGGACATGGGAGGAAGATAAATAC AACAGTAACAGGAGGAAAGCTTGGATCGCAAAAATGGTCTTCTTTGGCCGTCATTTCGAT GACCCATTGCAAAACCGTGTGACCGAAATCGATGACGAGGTTCTCAAGGAGCTTGCTGAT GAAGATGAGACCAATACTTTCCATATGATAGTGAAACAGGACTGA

Peptide Sequence

PEP ID	Zm00001d022576_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:7:180275844:180280398:1 gene:Zm00001d022576 transcript:Zm00001d022576_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:SNF2 domain-containing protein CLASSY 1
Sequence	MVKGSTGHHSNPIAPVPFEAFHNGSWHGANSIMIRDGGLLVKFVSSGYAVAVQHDIDGSY LRVRSRKATCSDCSHVLKPGADVCVWQAVYRGETKDSVLLCCRDARLIKIKRNHQSDRCL CLFAVIFYKDQCPGSKEKVISGTIADVVTIDDICILQNLQPEELQDGSVRWNSAVDCFHH NRSKLLSARFSLEVAYLIVLSSLRRMEFNIKMVDGNIIYQIIKGDQARDSIDSMSIPPGF GKNMDIISFKPRGEALRPITRTVPVTQVEEGNLTEDGCIAVKGESDSAQDVEILYAHVDI RRSKRMKTQPDRFTSYDARNFNRTYNKKEADGPSTKYEDSESGLSCDSSEQRESSDEEAL ENPRSMAAEHKYPVKRNQCSLPVKEKQISMEIKKNTTDQGCSDSYIPHTPAKNTERPRFR LKPFASSRSLDGNSEPAFCQKRGRKRKKHMCQIEYKRMIDQCIGNIQCEVERDSDFKFGD QILDGCVRAYQEVDFTWPSSADSQEEKDELDELWKEMDYALATVAILEQKQMTDSEVVHE SNTDLGKGGEHCHHDCMLDEQLGLTCRLCNVVCIEAKDIFPPMFTGKDHERPERNHFGQD GHVLDLSFFEICAPEFSKIKESGNVWASITDLEPKLLAHQRKAFEFIWKNLAGSLQLEEM DGSTSRGGCVVAHTPGAGKTLLLISFLVSYLKVHPRSRPLVLTPKAAIHTWRTEFQKWGI LLPLHVLHHSNRTSKLMGGLSSKLQAVLKSFHQPSWKTMRIMHCLDKLCKWHEEPSILLM TYSSFLSLTKEDSKLRHQAFITKVLMNNPGLLILDEGHNPRSNKSKLRKLLMKVKTEFRI LLSGTVFQNNFEEYFNTLSLARPRFVNDVMTTLVTESEKRTRSRTGKHQEALARHVFVER VGHKIESSSKHDRMDGISLLNELTQGFIDSFEGTKLNILPGIRVYTLFMKPTDVQEEVLA KLLMPLSGNARYPLEYELLITIASIHPWLINTTKCASTYFTPAEVASVDKYKRNFAAGCK AKFVIDLLHKSSFRGERVLVFCHNVAPIAFLVTLIEIVFGWRLGQEVLVLQGDQELHVRS DVMDKFNSDRRGKRKVLIASTTACAEGISLTGASRLVMLDSEWNHSKTRQAIARAFRPGQ ERMVFVYLLVASGTWEEDKYNSNRRKAWIAKMVFFGRHFDDPLQNRVTEIDDEVLKELAD EDETNTFHMIVKQD

Transcript Sequence

Transcript ID	Zm00001d022576_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:7:180275844:180280398:1 gene:Zm00001d022576 gene_biotype:protein_coding transcript_biotype:protein_coding description:SNF2 domain-containing protein CLASSY 1
Sequence	ACTGTTCAACGGCCTGGTATACTTCGCCAGCCGCCAGCCGCCGGCCGCCGGCCGCCGCAT TGCCCATCCACAGCGGCAGTGCAATCGATTGTCTTCCTTCTACTGGTATCCGCAGGCACT TTCGTTTGTGTTCATGTGCCTCAAGTAATATTGCTGTCAACATGGTCAAGGGATCCACAG GCCACCACAGCAACCCCATCGCTCCAGTCCCGTTTGAGGCGTTTCATAACGGATCATGGC ATGGAGCCAATTCTATAATGATACGGGATGGTGGTTTGCTTGTAAAATTTGTCTCCTCTG GATACGCAGTCGCAGTCCAGCATGATATTGATGGGTCCTATCTGCGCGTTCGTTCTAGAA AGGCAACTTGCTCGGATTGCTCACATGTTCTCAAGCCAGGCGCCGATGTTTGTGTATGGC AAGCAGTTTACAGAGGAGAAACAAAAGATTCTGTACTGTTGTGCTGCCGTGATGCAAGGC TCATCAAAATCAAGAGAAACCATCAATCGGACCGGTGCCTATGCTTGTTTGCCGTTATTT TCTACAAAGACCAGTGCCCAGGCAGCAAAGAAAAAGTGATATCCGGTACAATAGCTGACG TAGTGACGATAGACGACATCTGCATCTTGCAGAATCTCCAACCTGAGGAGCTCCAGGATG GGAGCGTGCGATGGAATTCTGCAGTGGACTGCTTCCATCATAACAGAAGCAAGCTGCTAA GTGCAAGATTCTCCCTGGAAGTCGCATACCTCATAGTTTTGTCTAGCCTGAGGAGAATGG AATTCAACATCAAGATGGTCGACGGCAACATCATTTACCAGATCATCAAAGGAGACCAAG CACGGGATAGTATTGATTCCATGAGCATACCTCCAGGTTTTGGGAAGAACATGGACATAA TATCATTCAAACCACGTGGTGAGGCTTTACGCCCAATTACCAGAACAGTTCCAGTCACTC AGGTTGAAGAAGGCAATCTCACAGAAGATGGGTGTATCGCCGTGAAGGGAGAATCTGATA GTGCACAAGATGTCGAGATCTTGTATGCGCATGTGGACATAAGACGCTCAAAGCGTATGA AAACTCAACCAGATCGCTTTACTAGTTATGATGCGCGTAATTTCAACCGGACCTACAACA AGAAAGAAGCAGATGGACCATCTACTAAGTATGAAGATTCGGAGAGCGGCTTGAGTTGTG ATTCATCAGAGCAGAGAGAATCAAGTGATGAAGAGGCCTTAGAAAATCCAAGGTCTATGG CAGCCGAGCACAAGTACCCAGTGAAAAGAAATCAGTGCTCTTTGCCTGTAAAAGAGAAAC AGATCTCAATGGAAATAAAGAAGAACACAACAGACCAAGGGTGTTCAGATTCTTACATTC CACATACGCCAGCAAAGAATACAGAGCGTCCGAGGTTTCGACTAAAGCCATTTGCTTCGT CTCGAAGCCTAGATGGCAATAGTGAACCAGCATTCTGCCAAAAGAGGGGTAGGAAAAGAA AGAAACACATGTGCCAAATAGAGTACAAGCGAATGATAGACCAATGCATCGGAAATATCC AGTGTGAAGTGGAGAGAGATTCTGACTTTAAGTTTGGTGACCAGATATTGGATGGCTGTG TACGTGCTTACCAAGAAGTGGATTTTACGTGGCCATCTTCCGCTGATAGTCAAGAGGAGA AGGATGAGCTTGACGAATTGTGGAAAGAAATGGACTATGCACTGGCCACAGTAGCAATTC TTGAACAAAAGCAGATGACAGATTCAGAAGTCGTTCATGAGAGCAATACTGATTTAGGAA AAGGAGGAGAGCACTGTCATCATGACTGCATGCTGGACGAACAGCTTGGTCTGACCTGCA GACTGTGCAATGTTGTATGCATTGAGGCAAAGGATATCTTTCCACCAATGTTCACTGGTA AGGACCACGAGAGGCCTGAAAGGAACCATTTTGGCCAGGATGGTCATGTACTTGACCTTT CCTTTTTTGAGATTTGTGCTCCAGAATTCTCCAAAATCAAGGAATCTGGGAATGTGTGGG CTTCAATCACTGATCTTGAACCAAAGTTACTTGCTCATCAGAGAAAAGCCTTCGAATTTA TATGGAAAAACTTGGCAGGATCATTACAGCTTGAAGAAATGGATGGTTCAACAAGTAGAG GTGGTTGTGTGGTTGCACATACTCCAGGAGCGGGTAAAACTCTTCTGCTGATTTCGTTTC TTGTCAGTTACTTGAAAGTTCACCCAAGAAGCCGGCCATTGGTCCTTACTCCAAAAGCTG CAATCCATACCTGGAGGACAGAGTTTCAGAAATGGGGCATCCTGCTTCCGTTACATGTGC TTCACCACTCTAACAGAACAAGCAAACTGATGGGGGGTCTTAGTTCGAAACTGCAGGCGG TTTTGAAGAGTTTCCACCAGCCATCGTGGAAAACAATGCGCATCATGCATTGTCTGGACA AACTATGCAAGTGGCATGAGGAACCAAGCATTCTTCTCATGACGTATTCTTCCTTCTTAT CGCTTACGAAAGAAGACTCAAAACTGCGTCATCAGGCGTTCATAACGAAAGTTTTGATGA ACAACCCCGGGCTATTGATTCTTGATGAAGGGCACAACCCAAGGAGCAACAAATCAAAGT TGAGAAAGTTGCTGATGAAGGTGAAGACTGAATTCAGGATACTCTTGTCTGGCACGGTCT TTCAGAACAACTTTGAAGAGTACTTCAACACCTTGTCTTTGGCCAGACCTCGTTTTGTCA ACGACGTTATGACCACGCTGGTTACAGAATCAGAAAAGAGAACACGGAGCCGAACCGGCA AACATCAAGAAGCACTGGCAAGGCATGTTTTTGTGGAAAGAGTGGGGCACAAGATAGAGT CTAGCAGCAAACATGACAGGATGGATGGCATCTCCTTGTTAAATGAGCTTACTCAAGGAT TCATCGATTCGTTCGAAGGTACAAAACTGAACATTCTTCCGGGTATACGTGTTTATACCC TTTTCATGAAACCCACCGACGTCCAGGAAGAGGTACTGGCGAAACTGCTGATGCCCTTGT CAGGCAATGCGCGTTACCCTCTCGAGTATGAGCTGCTCATCACAATTGCTTCTATCCATC CTTGGCTTATAAACACAACCAAGTGTGCTAGCACTTACTTCACCCCAGCAGAAGTAGCTA GCGTTGACAAGTACAAGCGGAACTTTGCTGCTGGTTGCAAGGCAAAGTTTGTGATTGATC TGTTGCACAAGTCCTCGTTCAGAGGGGAGAGGGTTCTGGTATTTTGCCACAACGTGGCCC CGATAGCCTTCCTGGTCACGCTCATAGAGATCGTCTTTGGATGGCGCCTTGGGCAGGAAG TCCTGGTGCTGCAGGGAGACCAAGAACTGCATGTGCGGTCAGATGTCATGGATAAATTCA ACAGCGACAGAAGAGGGAAGAGGAAGGTGCTGATTGCTTCAACTACAGCCTGTGCCGAGG GTATCAGTCTCACCGGCGCGTCCAGACTGGTGATGCTTGATTCGGAGTGGAACCATTCCA AGACAAGGCAGGCAATCGCGAGGGCGTTCCGGCCTGGCCAGGAGAGGATGGTGTTTGTCT ACCTTCTTGTGGCGTCTGGGACATGGGAGGAAGATAAATACAACAGTAACAGGAGGAAAG CTTGGATCGCAAAAATGGTCTTCTTTGGCCGTCATTTCGATGACCCATTGCAAAACCGTG TGACCGAAATCGATGACGAGGTTCTCAAGGAGCTTGCTGATGAAGATGAGACCAATACTT TCCATATGATAGTGAAACAGGACTGAAAAAAAAAGATATGGTCCCTTTGTTCTACATGGT TAAGTGCTGCTATGCTTTTGTAATTGTAATCTGGTGGTTTTAGCTGAGGAAAAAGAAACC TATGGATATCTTTCGTTAAGACTTTGTGCTGTAACAAGGATGTGCTTGCCTTGCTAACTA GTCTTGCATGAAATGCATATTCCACTCGGCATGATCAGAACCCGATGTGGCGCCT