Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d022570_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:7:180135335:180139411:1 gene:Zm00001d022570 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGCCGCGTCCGCGCGAGGGCGACGACTGGCCGCGAGAGCCAGGAAGCTGCTGGCGGCC
GACCTCGACCTCGTCCTCGACCTCGACCTGCCGCCGCCGTCCACCCAAGAACACCGCTGC
CTCAGCTCTGCCGCCGCTGCTACTGCTCTCGCCACCTCCGGTGGTGCAGGCCGTCTGGGC
TGCCGCTCCTATCTCGGAGGCGCGCCGCCGATGCCGCGTGTCGTCGTCCAACGTATCGAG
CGCTGCCGCGGGCCTCCCAGGCTGTCACTCCTTGACAAGTATATATGGCCGCTGATATAC
GATACGATGACGTGCAGTGCAGCTGCCTGTTTGATTTCTGCTCCCAAGTCCCAACTCCAA
TGTCCAATCCATGCTGGTACGGTGGTGTTGCGTTGCAGGTTTGATGCTGCTGGCGATGGA
GCGTGCCTCAAGAGGTACACCGACCCCTCCTTCTTCTTCAGGGCCCACTCTGCCAAGATT
GATGAGCAAGGCACGCTGAAGCAGCATCGTCGGCAGGCAGAAGCAGCAGCAGCAGCAGGT
GCCGCCGGGTCTATGTTCCTGCTGATGCAGCAAACAGCTGCTCACAGGGTCGAACAGCCC
AACATGGAACAGAAGCTGCAAGAAGGTAGTACAGCGCAGCCCAGCCCAAGTGAGCTCGAG
AGAACGAGCTCTTTCGAGGCATGGCTCTCTCCACAAGCTCGCCGCTTTCCTACCGCTACT
GCTGCTACTACTCATCACCATCTTCAGGAACCACCTGATGATGATGATGGTGGTGGTGGT
GGTGGTGCTACTACCTGTAGTGGATCCATCAGTAGTCAGGTTGATACCACATCGAATGCT
GCGGCTGTTAGCAGCAGTTCCACGGTGAAGGCGGTCAGGCTGAACTCAGCATCATTGGTG
AAAGGTGGTGAGAGTAATACGACGAGGTCGAGGTACAAAGGCAAGATCGCCTCAAGAGTC
AGCAGCTTGCCGAGGAAGCTCTTCATGAACACCACCAAGCATCACAACGACCACTCGCGC
TCTTTTCGTGCAGGTAGTAGCAGCCTCCGGGTGACCCAAGCCACAGACATCGGGGATTGC
AGCCCTGAACTTGAAGCCATCGCCGTCGCCATCCCCACCCCAGATCGATGCAGTAACAGT
AACAGCAGCACTCCTGAAACATGTACAGCAGCTGACTCCAAGAACCTGCTGCTGCTGCTG
CCAGGAAGTGGTCCTGTTCTGGAGCCACCTGACAATTCTTCTGCTGCTGCTGCTGAAGAC
GCCAAAGTACATACGCCACTTGCGCCTATTCCACCGATGCAGTGGCTGTCAGAGAAAGGG
ACTCCACCTGCATCTCCTAAACACAGAACACCATGTTTCCAGCAACAATTTGGTAGCAGT
GGGCAATCTGATGAGAAGCCAAGCCAAGAGCACGAGGCTTCAGACCACAGCAGCAATCTG
CTGCAGGAGAGCGTGTTCTTCTCTGCGGCACAAGAGCTAGCGAAGATGTCCCCTCCTCCT
CCTTGGGTGCCAAGGCCCAAATATCCACTGCTTGATGTTAAGGCAGTTAAGCTACGGAAT
GGTCCAAGCCCGATCCATCCTTCAAGAAACATTTTGGACAGCAGGAGTGCACAGATAAAA
GACATTGCAATTTCTTCCAAGCTGAAACCAGCTTCTAGAGCGAGCTCTCATGTGACTGGG
ACTGGGAGTCCTACCAACGCCACCATTCTGAACAGAGCAGATGGCATTCGGCAGGTGCAC
GATGATGAAACTGATCAAATCTGGAGCGATGACACTCAATGA

Peptide Sequence

PEP ID

Zm00001d022570_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:7:180135335:180139411:1 gene:Zm00001d022570 transcript:Zm00001d022570_T002 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MAASARGRRLAARARKLLAADLDLVLDLDLPPPSTQEHRCLSSAAAATALATSGGAGRLG
CRSYLGGAPPMPRVVVQRIERCRGPPRLSLLDKYIWPLIYDTMTCSAAACLISAPKSQLQ
CPIHAGTVVLRCRFDAAGDGACLKRYTDPSFFFRAHSAKIDEQGTLKQHRRQAEAAAAAG
AAGSMFLLMQQTAAHRVEQPNMEQKLQEGSTAQPSPSELERTSSFEAWLSPQARRFPTAT
AATTHHHLQEPPDDDDGGGGGGATTCSGSISSQVDTTSNAAAVSSSSTVKAVRLNSASLV
KGGESNTTRSRYKGKIASRVSSLPRKLFMNTTKHHNDHSRSFRAGSSSLRVTQATDIGDC
SPELEAIAVAIPTPDRCSNSNSSTPETCTAADSKNLLLLLPGSGPVLEPPDNSSAAAAED
AKVHTPLAPIPPMQWLSEKGTPPASPKHRTPCFQQQFGSSGQSDEKPSQEHEASDHSSNL
LQESVFFSAAQELAKMSPPPPWVPRPKYPLLDVKAVKLRNGPSPIHPSRNILDSRSAQIK
DIAISSKLKPASRASSHVTGTGSPTNATILNRADGIRQVHDDETDQIWSDDTQ

Transcript Sequence

Transcript ID

Zm00001d022570_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:180135335:180139411:1 gene:Zm00001d022570 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AGACCAAGTGATGGCCGCGTCCGCGCGAGGGCGACGACTGGCCGCGAGAGCCAGGAAGCT
GCTGGCGGCCGACCTCGACCTCGTCCTCGACCTCGACCTGCCGCCGCCGTCCACCCAAGA
ACACCGCTGCCTCAGCTCTGCCGCCGCTGCTACTGCTCTCGCCACCTCCGGTGGTGCAGG
CCGTCTGGGCTGCCGCTCCTATCTCGGAGGCGCGCCGCCGATGCCGCGTGTCGTCGTCCA
ACGTATCGAGCGCTGCCGCGGGCCTCCCAGGCTGTCACTCCTTGACAAGTATATATGGCC
GCTGATATACGATACGATGACGTGCAGTGCAGCTGCCTGTTTGATTTCTGCTCCCAAGTC
CCAACTCCAATGTCCAATCCATGCTGGTACGGTGGTGTTGCGTTGCAGGTTTGATGCTGC
TGGCGATGGAGCGTGCCTCAAGAGGTACACCGACCCCTCCTTCTTCTTCAGGGCCCACTC
TGCCAAGATTGATGAGCAAGGCACGCTGAAGCAGCATCGTCGGCAGGCAGAAGCAGCAGC
AGCAGCAGGTGCCGCCGGGTCTATGTTCCTGCTGATGCAGCAAACAGCTGCTCACAGGGT
CGAACAGCCCAACATGGAACAGAAGCTGCAAGAAGGTAGTACAGCGCAGCCCAGCCCAAG
TGAGCTCGAGAGAACGAGCTCTTTCGAGGCATGGCTCTCTCCACAAGCTCGCCGCTTTCC
TACCGCTACTGCTGCTACTACTCATCACCATCTTCAGGAACCACCTGATGATGATGATGG
TGGTGGTGGTGGTGGTGCTACTACCTGTAGTGGATCCATCAGTAGTCAGGTTGATACCAC
ATCGAATGCTGCGGCTGTTAGCAGCAGTTCCACGGTGAAGGCGGTCAGGCTGAACTCAGC
ATCATTGGTGAAAGGTGGTGAGAGTAATACGACGAGGTCGAGGTACAAAGGCAAGATCGC
CTCAAGAGTCAGCAGCTTGCCGAGGAAGCTCTTCATGAACACCACCAAGCATCACAACGA
CCACTCGCGCTCTTTTCGTGCAGGTAGTAGCAGCCTCCGGGTGACCCAAGCCACAGACAT
CGGGGATTGCAGCCCTGAACTTGAAGCCATCGCCGTCGCCATCCCCACCCCAGATCGATG
CAGTAACAGTAACAGCAGCACTCCTGAAACATGTACAGCAGCTGACTCCAAGAACCTGCT
GCTGCTGCTGCCAGGAAGTGGTCCTGTTCTGGAGCCACCTGACAATTCTTCTGCTGCTGC
TGCTGAAGACGCCAAAGTACATACGCCACTTGCGCCTATTCCACCGATGCAGTGGCTGTC
AGAGAAAGGGACTCCACCTGCATCTCCTAAACACAGAACACCATGTTTCCAGCAACAATT
TGGTAGCAGTGGGCAATCTGATGAGAAGCCAAGCCAAGAGCACGAGGCTTCAGACCACAG
CAGCAATCTGCTGCAGGAGAGCGTGTTCTTCTCTGCGGCACAAGAGCTAGCGAAGATGTC
CCCTCCTCCTCCTTGGGTGCCAAGGCCCAAATATCCACTGCTTGATGTTAAGGCAGTTAA
GCTACGGAATGGTCCAAGCCCGATCCATCCTTCAAGAAACATTTTGGACAGCAGGAGTGC
ACAGATAAAAGACATTGCAATTTCTTCCAAGCTGAAACCAGCTTCTAGAGCGAGCTCTCA
TGTGACTGGGACTGGGAGTCCTACCAACGCCACCATTCTGAACAGAGCAGATGGCATTCG
GCAGGTGCACGATGATGAAACTGATCAAATCTGGAGCGATGACACTCAATGAATAATGAT
CATGTACTAACTGATGGAAGTAGAGTCATTCAAGTTGAGATGGCCGAGTTGGTCTAAGGC
GCCAGATTAAGGTTCTGGTCCGAAAGGGCGTGGGTTCAAATCCCACTCTCAACAAATATT
TTTTTATTTTTCCTGTTACTCTTGTAATTGTTTGTAGAGAATTCATTAGCTTTTTTTTTC
AAATCCAACTCTCAACAAACATGTTTTTCATTGTATTGTTTTTCTTTTTCCTGTTTCAAA
CTACTCTTCTAATTGTAATTGTTTGTAGAGAATTCATTAGCCCTTTTTTTACTTTATCAT
GCAGTTCTTGTTTTTGGATTGTTTTTCTTCTTCCTGTGTTAAGCTAATCTGGTTCTTGTA
ACTGTTTGTAGAAGATTCATTATTCTTGTAACAGTTCTTGGATTGTCTCTACAAATTTGT
TGAGGCTTATAGTTATTAGATTTTAGCCACAGGATCAAATCTTTGGCGCGCGCGTGTGTG
TGTGAGACTTAATGTATTACCTTTTAGCCTGTCTTAATATACTCATGTTCCTGTGTTGTT
TGTAGATTTAGAGAATTATAGAGAACATGAGTATATTAAGCTATTCTTTATCGTTCTTTT
TTTCTGTTTTAAGCTATTCTTCTTATATTGTTTGTAGAGAACCGCTGAGGCTCAGAGATT
TCAAACACAGGATTTTAAAATATCTTCAGACCGCACGAGCATGGACGTTCACTTATCAGT
TATATTCTTATCAGGGCTTGTTAAGTTAGAGGTCTTTCTATTTAATTTTGAATAGGAAGA
AATTTAATCCCATCAAACCCCATGCGACCAAACAAGCTCTCAAGTGAGTCAGATTGCACT
TGTCACCTTCTAATCGAAGCGAATATATATATTTTCAGTTTTTTTTTATAATGGAAACAT
GAGTTCCAGCTTTAGCATGGTAATGTGTACTTTTCAGTTATATCTTACAGTGTTTGTTTG
AGCTCAGAAACGTCCCTCGACAGGTATTTTTTTGGCCATGCCCAGAATATCATAGTTCAG
ATTGAATCGATCAAATTCCATAACCAGACAGAACAAAGAATGATGGGACACAGCACATAT
TACTCTTGAATTTTCTGAACCACTGGATTGTCACTTGTCTCCCATCTTTCTCTGACATCG
TCAGCTACCTGCATATGCATAAGCAAAACATGGATATCACTGCAAGAGAAAACTAGGTTT
GACCAAATACATCTATACATCATTGTGATGGTACCTCTTGCCCCTTGGTTACAACAGGCT
TGGTGTACTCATCCACTCTTTTATAGACCGGGTGACCTCGGATCTTATAGAAAAAAAGGA
TTTCAGATAGAAAATCAATATGAGAAAGATAGGGGCAAAGTTGAACAATCTCCTTAAAGA
TACTTTTTTCTTAAATGCTTCCCATTTTTCACCTAGTACTGTCTTTTTTGTTGGTGTAAG
AACTAAATCGGTTCATATACTCTTTCTACTTTAGCAGAAGCATGCCTAGCTTGGTGTTTT
TTTTTCCTTCTTTCTGCTAGAGCTAGAGCTTAATTCATCCTTGACGACTCCATATCCCTG
CTTAGGTAAATTTGTGTCCTTCAACTTTGCAAATGCACCGGACACCACTGGTGAAGCCGA
TGTGATTGTTGACTTCAATTTACTAAACAATGTGTGGATGTTTGTGGCATATTCAGACGT
GTCATTTGAATGTGAGGATGCCTCAGTTTTCTCATGTTTTGAAGCTTCAGGGGAACCATC
CATGCAACTTGTACTCTCTTCTTTTCGGACTCCAAAACTTTCCTTCACCTGTAAACGTTT
CATCAAGGCAAAGAATACATGTTTACAGAAAATCACGGTCTGTACTGTATCAAAGTGATA
TTTATGTATCCTTACCTCTTCTTTAGCAGCAAACATTTTTTTTCTTTGATATTTGCAGTA
ACCTACAAG