Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d022499_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:7:178848562:178853195:-1 gene:Zm00001d022499 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGGCTGCGTGCACGGCCGCCCCGCCACCTCCAGCCCCGCGCCCGCCGCCACCTCCTCC
AGCCGCCGGGACCATCCCACGGCCTCCCAGACGCACAAGGACGGGGTCGATTCCGCCGCC
GCCGCACCTCCGGTGGACGCCGAGGCGCCGGAGCAGCAGGCGGCCGAGAAGCCCCAGAAG
GTCAAGCGGGAGCGGCGGTCGCGGTCGTCGCGCTCCGCCGCCTTCGCGGCGCACACCGAG
GTGCGCCTGGGCGGGAGCTTCGCCAACAAGGCGCGCGGCGAGCAGGTCGCCGCCGGCTGG
CCCGCTTGGCTCTCCGCTGTCGCCGGCGAGGCCATCGAAGGATGGACCCCGCGCCGCGCC
GACTCCTTCGAGAAGATCGACAAGATCGGCCAGGGCACGTACAGCAATGTGTACAAGGCG
CGAGACTCGCTGAGCGGCAAGATCGTGGCGCTCAAGAAGGTGCGCTTCGACAACCTGGAG
CCCGAGAGCGTGCGGTTCATGGCGCGCGAGATCCTCATCCTGCGCCGCCTCGACCACCCC
AATGTCGTCAAGCTCGACGGGCTCGTCACCTCCCGCATGTCCTGCAGCCTCTACCTCGTC
TTCGACTACATGGTCCACGACCTCGCCGGCCTAGCCGCCAGCCCCGACATCAAGTTCACG
CTGCCCCAGGTCAAGTGCTATGTGCACCAGCTGTTGTCAGGACTTGAGCATTGTCACAAC
CGGGGAGTGCTACATCGCGACATCAAGGGGTCTAACCTGCTTTTGGACAACAACGGTGTG
CTGAAGATTGCTGATTTCGGTCTGGCGTCCTTCTTCGACCCCAACCATAAACAGCCAATG
ACGAGTCGGGTGGTGACACTCTGGTACCGCCCACCAGAGCTGCTGCTGGGTGCGACAGAT
TATGGAGTTGGCGTCGACTTGTGGAGCGCAGGATGTATACTAGCTGAATTGCTGGCTGGA
AAGCCCATTATGCCTGGACGGACTGAGGTGGAACAGCTGCATAAAATTTTTAAGCTATGT
GGCTCTCCGACAGAAGAATATTGGAAAAAATCAAAGTTGCCTCATGCAACTATATTTAAG
CCCCAACAGCCATACAAAAGGCGAATAGCGGATACATTCAAAGATTTCCCTCAATCAGCA
CTTCGACTGATCGAGACACTACTTGCAATTGATCCAGCTGATCGGTTAACGGCAACTTCT
GCATTGAACAGTGATTTCTTTGCAACAGAGCCTTATGCGTGTGAACCATCAAGTCTGCCC
CAATACCCACCAAGTAAAGAGATGGATGCTAAACGAAGAGACGAAGAAGCTAGACGCTTA
AGGGCTGCTGGTGGTAGAGGTAACGGAGATGGAACAAGGAAGACAAGGACACGGGATCGG
CCTAGGGCTGTTCCAGCGCCAGAGGCAAACGCCGAACTGCAAGCAAACATTGATAAAAGA
AGGTTGATAACTCATGCAAATGCTAAGAGCAAGAGCGAAAAGTTCCCTCCACCGCATCAG
GACGGCGCGCTCGGCTTTCCCTTGGGCTGTTCGAATCACATGGAACCTTCATTCGAGCCC
CCGGACCCTTCTTCCTTCAGCACTGTATTTCCTTTCGAGAAAAGCGCGGTGCCAACCTGG
TCCGGACCGCTGGCGGACTCTGCAGCTGGCAACCAGAAGCGGAAACACAAGTCTGCCCGC
TCCTCAAAACAACCAGCAACTGCCCGTGCTAGATGA

Peptide Sequence

PEP ID

Zm00001d022499_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:7:178848562:178853195:-1 gene:Zm00001d022499 transcript:Zm00001d022499_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MGCVHGRPATSSPAPAATSSSRRDHPTASQTHKDGVDSAAAAPPVDAEAPEQQAAEKPQK
VKRERRSRSSRSAAFAAHTEVRLGGSFANKARGEQVAAGWPAWLSAVAGEAIEGWTPRRA
DSFEKIDKIGQGTYSNVYKARDSLSGKIVALKKVRFDNLEPESVRFMAREILILRRLDHP
NVVKLDGLVTSRMSCSLYLVFDYMVHDLAGLAASPDIKFTLPQVKCYVHQLLSGLEHCHN
RGVLHRDIKGSNLLLDNNGVLKIADFGLASFFDPNHKQPMTSRVVTLWYRPPELLLGATD
YGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEEYWKKSKLPHATIFK
PQQPYKRRIADTFKDFPQSALRLIETLLAIDPADRLTATSALNSDFFATEPYACEPSSLP
QYPPSKEMDAKRRDEEARRLRAAGGRGNGDGTRKTRTRDRPRAVPAPEANAELQANIDKR
RLITHANAKSKSEKFPPPHQDGALGFPLGCSNHMEPSFEPPDPSSFSTVFPFEKSAVPTW
SGPLADSAAGNQKRKHKSARSSKQPATARAR

Transcript Sequence

Transcript ID

Zm00001d022499_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:178848562:178853195:-1 gene:Zm00001d022499 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ACTCGCCCAAGCTTTACTACTTTACTCGCCCCCACCACCACCACCTCCAACCCCGCCTTC
CGCTTCCCACCCGCCCCGCCTGTCTCCACGCGCCGCCGCCGCCTCCGGATCGCGGCCTCC
CTCCTGCCCTGCAGCGAAGCTTTGCGCGCTCGGCTCGGCCCGGCCCGGCCCATGCCCCGC
CGTGGGTGACCAGCGCCTCCACGTCCGGCCATGGGCTGCGTGCACGGCCGCCCCGCCACC
TCCAGCCCCGCGCCCGCCGCCACCTCCTCCAGCCGCCGGGACCATCCCACGGCCTCCCAG
ACGCACAAGGACGGGGTCGATTCCGCCGCCGCCGCACCTCCGGTGGACGCCGAGGCGCCG
GAGCAGCAGGCGGCCGAGAAGCCCCAGAAGGTCAAGCGGGAGCGGCGGTCGCGGTCGTCG
CGCTCCGCCGCCTTCGCGGCGCACACCGAGGTGCGCCTGGGCGGGAGCTTCGCCAACAAG
GCGCGCGGCGAGCAGGTCGCCGCCGGCTGGCCCGCTTGGCTCTCCGCTGTCGCCGGCGAG
GCCATCGAAGGATGGACCCCGCGCCGCGCCGACTCCTTCGAGAAGATCGACAAGATCGGC
CAGGGCACGTACAGCAATGTGTACAAGGCGCGAGACTCGCTGAGCGGCAAGATCGTGGCG
CTCAAGAAGGTGCGCTTCGACAACCTGGAGCCCGAGAGCGTGCGGTTCATGGCGCGCGAG
ATCCTCATCCTGCGCCGCCTCGACCACCCCAATGTCGTCAAGCTCGACGGGCTCGTCACC
TCCCGCATGTCCTGCAGCCTCTACCTCGTCTTCGACTACATGGTCCACGACCTCGCCGGC
CTAGCCGCCAGCCCCGACATCAAGTTCACGCTGCCCCAGGTCAAGTGCTATGTGCACCAG
CTGTTGTCAGGACTTGAGCATTGTCACAACCGGGGAGTGCTACATCGCGACATCAAGGGG
TCTAACCTGCTTTTGGACAACAACGGTGTGCTGAAGATTGCTGATTTCGGTCTGGCGTCC
TTCTTCGACCCCAACCATAAACAGCCAATGACGAGTCGGGTGGTGACACTCTGGTACCGC
CCACCAGAGCTGCTGCTGGGTGCGACAGATTATGGAGTTGGCGTCGACTTGTGGAGCGCA
GGATGTATACTAGCTGAATTGCTGGCTGGAAAGCCCATTATGCCTGGACGGACTGAGGTG
GAACAGCTGCATAAAATTTTTAAGCTATGTGGCTCTCCGACAGAAGAATATTGGAAAAAA
TCAAAGTTGCCTCATGCAACTATATTTAAGCCCCAACAGCCATACAAAAGGCGAATAGCG
GATACATTCAAAGATTTCCCTCAATCAGCACTTCGACTGATCGAGACACTACTTGCAATT
GATCCAGCTGATCGGTTAACGGCAACTTCTGCATTGAACAGTGATTTCTTTGCAACAGAG
CCTTATGCGTGTGAACCATCAAGTCTGCCCCAATACCCACCAAGTAAAGAGATGGATGCT
AAACGAAGAGACGAAGAAGCTAGACGCTTAAGGGCTGCTGGTGGTAGAGGTAACGGAGAT
GGAACAAGGAAGACAAGGACACGGGATCGGCCTAGGGCTGTTCCAGCGCCAGAGGCAAAC
GCCGAACTGCAAGCAAACATTGATAAAAGAAGGTTGATAACTCATGCAAATGCTAAGAGC
AAGAGCGAAAAGTTCCCTCCACCGCATCAGGACGGCGCGCTCGGCTTTCCCTTGGGCTGT
TCGAATCACATGGAACCTTCATTCGAGCCCCCGGACCCTTCTTCCTTCAGCACTGTATTT
CCTTTCGAGAAAAGCGCGGTGCCAACCTGGTCCGGACCGCTGGCGGACTCTGCAGCTGGC
AACCAGAAGCGGAAACACAAGTCTGCCCGCTCCTCAAAACAACCAGCAACTGCCCGTGCT
AGATGATACACACCATGCCGTGCTTAGCGCAGATCAAGTCTTCAATACCCCCAAAGAAAC
ACATTGTAGTGGTTCCTACAAACTGGGATGTCTGATTCGGAATCAAGAGCTACAACAAGG
AATTGTTTACTTTTTTCTCGGATTCAATTCATGTATGAAAATTTTTCTGAACAACGGTCA
ATGTATAGGCTGGAGAGGGAGCTCGATTAGTCCATTATGTACATTAGGTTCTCTTTTCCA
TTCTTACAAGCAACATGTCTGTTAGATTAATTCGAAGTGAGGAATGGAACTGGTAGGTCA
GCTTAGCAAGTCATCACTCTGCATAGATTACTTCCAATCAATTGAATATTTTTTTACCTG
CTATTTTGTCAACAA