Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d022498_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:7:178840756:178848611:1 gene:Zm00001d022498 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING finger and CHY zinc finger domain-containing protein 1 isoform 1
Sequence

ATGCAGGTCGCCGCCGCGCGCGCCCGCCGCCTCCTCGCCTTACCGGCGGCCTCGGGGATC
CCCGGAATACTCTCCGGACCGATCCCAGGGCGCGCATCATGCGCCGAGGGCGTTCTCCTT
TACCGTCTCAATGGCGCTCCCGCTTCGCCGTCTTCTCCGCAGCATACCAGGGGCTTCTCC
TCCTCCTGCTTCGCCTCCCGATCACACTGTAACCTCCCATCGCCTACCATAGCTTCTCAA
TGGTTGAATGAGAAATCAGTACACTGTCACATGACGACAGCACACTTCTCAACGGAAGCA
AGTGACATGGACCACCCTACAGAAGCTGTAGAGGAGATGTACCAGAAAATGTTGAAATCT
GTTGAAGCTGAGACCATGCCTCCAAATGCCTGGTTGTGGTCAATGATTGATAGCTGCTCC
AATAAGGAGGACATCAAACTTCTTTTTCAAATTTTGCAGAAACTCAGGGTATTTAGACTA
TCAAATCTTCGCATCAGTGCAAACTTCAATGAGCATCTCTGCAGAAAAGTAACTGAGGCT
TGTGCTCGTGTAGGCGCCGTTGACTATGGGTTGAAGGCTTTATGGAAACATAATGTTTAT
GGAATAACACCAACGATTGGTTCTGCTCATTATCTACTGCAACATGCTAAAGAGCAAAAT
GACAACAAACTAATGGAAAACGTAATTCATGTCCTATCAAAAAATTTCTTACCGCTGCAA
CCAGGCACAGCTGATATAGTCTTCAGTATCTGTTATAATGCTGATAGATGGGATTTACTC
TCAAAATACGCGGAGAGATTTGTTAAGGCAGGTGTCAAACTGCATCGAGCTGCATTTGAC
ATTTGGATGGACTTTGCTGCCAAAGTTGGGGATTCTCAATCTATTTGGCACATTAATAGT
CTAAGAGGCAGGTCTGTCAAACATTATACACTTGCAACAGGGTTTGCATGTGCAAAGGGG
TCTCTGCTTGATCGGAAGCCAGAAAATGCCGCTGACAAGATTAAGCTTCTTTATGAGCAT
TTGCCTGATCAGAAGAAACCATTTGTGAAAGATGAACTCGAGAAACTTATTGCTGGATGG
CCTACGGAGGTGGTAAAGAGGCAGAAGAAAGATAAGAGGAAGGAGTTGGAGGAAGCTTTG
ATGAAGGACATCCCTACGATGGTGGACTGCCTGACAAAGTCCGGCCTCGACATCCCTGTG
GAACTGGACAAGCTTGCCACCCCACAGCTCCAAGTGGCGTAG

Peptide Sequence

PEP ID

Zm00001d022498_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:7:178840756:178848611:1 gene:Zm00001d022498 transcript:Zm00001d022498_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING finger and CHY zinc finger domain-containing protein 1 isoform 1
Sequence

MQVAAARARRLLALPAASGIPGILSGPIPGRASCAEGVLLYRLNGAPASPSSPQHTRGFS
SSCFASRSHCNLPSPTIASQWLNEKSVHCHMTTAHFSTEASDMDHPTEAVEEMYQKMLKS
VEAETMPPNAWLWSMIDSCSNKEDIKLLFQILQKLRVFRLSNLRISANFNEHLCRKVTEA
CARVGAVDYGLKALWKHNVYGITPTIGSAHYLLQHAKEQNDNKLMENVIHVLSKNFLPLQ
PGTADIVFSICYNADRWDLLSKYAERFVKAGVKLHRAAFDIWMDFAAKVGDSQSIWHINS
LRGRSVKHYTLATGFACAKGSLLDRKPENAADKIKLLYEHLPDQKKPFVKDELEKLIAGW
PTEVVKRQKKDKRKELEEALMKDIPTMVDCLTKSGLDIPVELDKLATPQLQVA

Transcript Sequence

Transcript ID

Zm00001d022498_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:178840756:178848611:1 gene:Zm00001d022498 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING finger and CHY zinc finger domain-containing protein 1 isoform 1
Sequence

GTCTGACTTCGTTTCGGACCTCCCCAGTTTTTCCCCTCCGGCCGCCGCCGGAGAAGCAGA
AGCCATGCAGGTCGCCGCCGCGCGCGCCCGCCGCCTCCTCGCCTTACCGGCGGCCTCGGG
GATCCCCGGAATACTCTCCGGACCGATCCCAGGGCGCGCATCATGCGCCGAGGGCGTTCT
CCTTTACCGTCTCAATGGCGCTCCCGCTTCGCCGTCTTCTCCGCAGCATACCAGGGGCTT
CTCCTCCTCCTGCTTCGCCTCCCGATCACACTGTAACCTCCCATCGCCTACCATAGCTTC
TCAATGGTTGAATGAGAAATCAGTACACTGTCACATGACGACAGCACACTTCTCAACGGA
AGCAAGTGACATGGACCACCCTACAGAAGCTGTAGAGGAGATGTACCAGAAAATGTTGAA
ATCTGTTGAAGCTGAGACCATGCCTCCAAATGCCTGGTTGTGGTCAATGATTGATAGCTG
CTCCAATAAGGAGGACATCAAACTTCTTTTTCAAATTTTGCAGAAACTCAGGGTATTTAG
ACTATCAAATCTTCGCATCAGTGCAAACTTCAATGAGCATCTCTGCAGAAAAGTAACTGA
GGCTTGTGCTCGTGTAGGCGCCGTTGACTATGGGTTGAAGGCTTTATGGAAACATAATGT
TTATGGAATAACACCAACGATTGGTTCTGCTCATTATCTACTGCAACATGCTAAAGAGCA
AAATGACAACAAACTAATGGAAAACGTAATTCATGTCCTATCAAAAAATTTCTTACCGCT
GCAACCAGGCACAGCTGATATAGTCTTCAGTATCTGTTATAATGCTGATAGATGGGATTT
ACTCTCAAAATACGCGGAGAGATTTGTTAAGGCAGGTGTCAAACTGCATCGAGCTGCATT
TGACATTTGGATGGACTTTGCTGCCAAAGTTGGGGATTCTCAATCTATTTGGCACATTAA
TAGTCTAAGAGGCAGGTCTGTCAAACATTATACACTTGCAACAGGGTTTGCATGTGCAAA
GGGGTCTCTGCTTGATCGGAAGCCAGAAAATGCCGCTGACAAGATTAAGCTTCTTTATGA
GCATTTGCCTGATCAGAAGAAACCATTTGTGAAAGATGAACTCGAGAAACTTATTGCTGG
ATGGCCTACGGAGGTGGTAAAGAGGCAGAAGAAAGATAAGAGGAAGGAGTTGGAGGAAGC
TTTGATGAAGGACATCCCTACGATGGTGGACTGCCTGACAAAGTCCGGCCTCGACATCCC
TGTGGAACTGGACAAGCTTGCCACCCCACAGCTCCAAGTGGCGTAGCAAAAGAAGGCGCG
CGGCTCGCCATACAACCGGAACAGACTTGAGTCTCGAGGAACAGCATGCATTTTGGTTTG
GCACTGATGCAGGCAGCGCAGCGCAGCGCAGGACGCAGATTGAAAATCTGTGATAGATGA
AATCATGTTTTTATTTCTGTTTCTAATGTTGTAGTGCAGGCCCGTGCGTGGTGCGCCCTT
TCTGTTGTGCGTTGACCGTTGAAAATCTGTGATAGATGAAATCATGTTTTTATTTCTGTT
TCTAAGAAGCAAATTGCCGTCGTATCTTGGCACGTGTTGTAACTGTACCCATCCTTTCTC
CAAGGACTTTCTAATCTGTTATTACTTTTAATATTGCATTAATAGACCTAGTCGCGAAAG
GGGTAAGTTTCAGTTTTGCATCAAAAAAGATGTGAGCATTGAATCTCACAATTGTTGCCT
GGTCAATGCAGATCTATATACTCTATGCATCACCTAGTTGATAGGTCCATCGTCTGGACC
ATCCTGGGGTGCACCTGCCCGTTTGTGCGGCTATCCGCCTATCCCCGGAGACAAGGCGTG
TGATCCATACAGCTCAGAGGGTGACGGAAGCCTTGGCAGCTACTCCCTGGGTGACTTCCA
CGAGCTCCAGGACGAAGTGGACAGCAGGATCGACTCGGAATTCGTGCGGCCCCAAGGAAT
TCGCCCAAAAAACGGCGTCCTGCTGGAAGAAATCTGTGAAAATTCCATCACCATATCAGA
AGACTCAAGGAGACACAACCTTCGGCCATAACAGCAGAAAGCAATTCAATTTTGCTACGC
TTTTGATTCTGTTTGAAGACCTTGTAAAATGGAATAAAGGAAAAAAAACAGATGACGCAA
ATTGTTGACAAAATAGCAGGTAAAAAAATATTCAATTGATTGGAAGTAATC