Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d022429_T039
CDS Infomation	cds chromosome:B73_RefGen_v4:7:177477657:177491074:-1 gene:Zm00001d022429 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mediator of RNA polymerase II transcription subunit 33A
Sequence	ATGGCGGCGGTGAAGGCGTCGGAGGCGCGCGGGGACCCGCCGCTTCTGCAGGTGGTGGAG CTATCCCGCATCGTCGCCGTGGAGGGCGCGGGGACCCTCTCCAGCGCCGACCTTGCCAGG ATCCTCGTCTCCAACCTATGCTTCGCGCACAACTCGCCCTCGCTCTGGAAGCTCCTGGGC CAGGCCGTCGTGTCCCGCCTCCTCTGCCCGCTCCACGTTCTCGCACTCCTCACCCCTAGG GTGCTGCCGCAGCGGCGAGCGCAGCCTGAGGCGTACCGCCTGTACCTGGAACTCCTCAAG TGTCATGTCACGTCGTCCTTACTGTCGATGGAGGCTGGGCCTAATCGTGACAAGATAGGG AAGTCCATTGCTGAAGCTTTGCAACTATCAAAGGTTTATGGATTTTCTGGAACAGAGTTT GGACATGTTGTCATTATGTTTGTGTTGGCTGTTGTCAGTAAACTGATTGATAGTATATTT GAGGATTGTGGCTTTCCATCTGCGATGGTAGAGGGGCAAGAGAGTGTCAATGCCATCGAT GGGCCACAGCCTATGGACTTAGACGTTAAAATGGGATCTACTGAGAACCAAAATGAGCAT CGCGAACAGTTACGTCGGAAGAACACTCTCATCGCTTTGGACGTGTTGCATATGATGACT GCTGATAGAAAGATTCAATCATTTCTGCGCTTGATATTCCTGAACATGCCTGAAAGGTTC AGTTCTCTACGCCAGAGGTTGAGTTCTATTGAAGCACAGAAGGTGTCCTTGGAGACTCTA CTGCCTTCTGGACACAAAATTAATGAATTGTTAATAAATTTCTGGAGAGTTTGCAAAACA GACTATCAACCGAATAACAAACACATTCTTGGTGTTCTTGGTAATATGGGATCTGGTGGA TCCCTTCTGGGCCAACTTACTGGAGCTGGGAGGCCTGCCTGCTGGATAATATTTGATATA TATGTGGAGAATGCAATTGATGGGAGGCATCTAAGTGTTATATCAGCTATCCGAATTATA AAAGAAATGACCAAGACAATGCAAGTGCTTAACGAAGCAAGCTGGCAGGAAACATTTAAA GCTCTTTGGATTTCTGCCCTTCGTCTTGTACAACGGGCTAGAGAACCTCTTGAAGGACCA ATTCCTCATCTAGATGCAAGGTTATGCATGTTGTTAGCTCTTATACCATTATCAGTTGCT GCGATTCTTCAAGAAGAAAGCGATATGCTTGGAGCTGAAGGAAACAAAATTCTTCCACAA AGACAAGGGCTTATATCGTCTCTCCAGGATCTGATCCAGTATTCAGGACTTCTTGTGCCA CCTTCATCAGTGGTGAATGCAGCTAATGCTGCAGCCTCAAAAGCGGCAATATTTAAGGCC AACTATGAGGCTGGGGTTGGCAACTCTAGCATGATGGACCAGACTGACTCTTCAATGAAA GCTGCTGGGAACATGCTCCATCTTATTATTGAAGCCTGTATCTCGAGAAAGTTGATCGAT ACATCTGCTTATTTATGGCCTGGTTATGTTGTACCATCTGGGACTTTAAAAGATACAGCT TTGCCCCAAGAATCCCCTTGGTTAAACTTTATGAAAGGGTCTCGACTTTCAGGACCCCTT ATTGATGCTCTGGTCGCATCTCCTGCTTCAAGTGTTGCGGAATTGGACAAATTATACAGT ATAGCATTAAATGGTTCAGAAGAAGAAAAAACAGCTGCTGCAAAGATTCTTTGTGGTGCA TCACTTGTTCGTGGCTGGAACATTCAGGAACATGTGGTCGGTATGGTGGTCAAGCTATTA TCAGCTTCTTTACCCTCAGATTCTGCAACTTCAACTCCTGGGAGCATGAGCAACTACCTT GCTCATATGTCTACATTAAACGAAATCTTACTCGGTGTGTCTTATGGTGATGCCATCCAC ATTCTTTCATTGTATGGAATGGTTCCAGATGTTGCTGTGGCGTTAATGCCAATATGTGAG GCTTTTGGGTCAATACCACCGCCACCTAATCACAAGTCTACCATTCTTGGTGAAATATCT GTTTATACAGTCTTCTCTTGTGCATTCCTTTGTCTTCTTCGTTTGTGGAAGTTTTATAGA CCTCCTCAAGAGTATTGTCTTGCTGGTCGTGGAGGCTCAGTAAAGCTGGAACTGACTCTG GACTATCTGTTGTTGATGCACAATAATCACATTGAGTTCTCAAATTCATCTGCCTCTAAT AGGGATTCTTGCAATGATATGGGCTCAGTAAATGAGGTTCCTGCTCAGCTGATTTATATT GATTCTTTTCCCAAGCTAAGGGCTTGGTATTTCCAGAATCAAGCTTGCATTGCTTCTCCA CTTTCTGGTCTTTGCAACAAAAACCCTGTTCATCAAGTTGCGAACAAAATTTTGAATATG ATTTGCCGAAAAATGAATAAAGGCTTAAGGGATCTTGTGGACTTTTTGCCTGCTTCTCTT GCTGCAATTGTGAGCTACTTCTCAGCAGAAATTACACGAGGAATCTGGAAACCTGTCCCA ATGAATGGAATTGAATGGCCTAGTCCCGGTGCTTCTCTTCATTCCATTGAAGCTGAAGTA AAGGAAATTCTTGCCTCTGCTGGTGTTCAGATTAACAGCTGCTATCCACGCTTCGTCATC AATGTGCCAAATACCTTTATTCCACTTATATTGCCATGTAAAGTGTACATTATATTCTTT CAGGTGCTAGATAGGAGTTTGGAGTACATTCAAGGGGTCATTGGACAGGCGCTAGAGAAC TGTGCAGGGGGGAGTTCCTGGCCAAGCATGCCCATTATTGGGGCATTGTGGACACAGAAA GTGCGAAGATGGCATGACTTCATCGTCCTCTCTTGTATGCGTTCTCCATTCGGCAGAGAC AAAGATGCAGTTGCGCAGCTCATCCAAAGTTGCTTCTCGTCCTTTCTGCAGTCTTCATCC AGTGGTTCTGATATAATTGCAAACCGTGGAGTTGGGGCTTTACTAGGGGACTCAATCACG AATCAAGGTCTTAGGCTCCCAATGGCACCTGGTTTCATCTACTTGAGAACATGTCGAACT TTCCATGACACTTACTTTGTTAGTGAAGTGATCCTTAAGCAAGTGATTGAGTGGGCTCAC AAACTTGCAAACGGATGGTGTTTCAATGGTCCTCCGCAGTTGAAATCAGGGCGGACACCA CTATCTTGTGCAGCATCCATGGTGCAGCAGGTCGCGTTGCTTGGTGGAGGTCTCCTATGC ATAGCAGGTGGACCACTTGTGGTCCAGGTGTTGTATGAGGAAACACTGCCAACACTGCTG CTATCAGCCAGAGATCAGAGTTTGAAAGGCCCTGGGCCAGTTTCTAGCACACTCCAAGGT TACGCCATGGCCAACATGCTCTTCTACTGTGGTAGCCTGCTTTGGGGAGCGGATAGGACT TCTCCTGTCATGAAATTGTCCTTCCTCTCGAGGCGGCCACGGGTGGTGAGAACCCACATG GATTTCATAGCTGGTGTGTTGGACGGACACATTCTTCTGGGCTGTGACCCGGGTACGTGG AAAGCGTATGTGTCGCAATTTATGTTCCTGGTGGTGAAATTTGTTCCGTCATGGTTGCGG GACATAAAGCTGGACACGCTAAAGAAGATAGCAGCTGGACTTCGGAGCTGGCACGAACAC GACCTTGCTCTGTCTCTTCTTGAACGAGGAGGACCACAAGCAATCTCTGTTGTAGTCGAG ACCTTTCTGTAA

Peptide Sequence

PEP ID	Zm00001d022429_P039
PEP Infomation	pep chromosome:B73_RefGen_v4:7:177477657:177491074:-1 gene:Zm00001d022429 transcript:Zm00001d022429_T039 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mediator of RNA polymerase II transcription subunit 33A
Sequence	MAAVKASEARGDPPLLQVVELSRIVAVEGAGTLSSADLARILVSNLCFAHNSPSLWKLLG QAVVSRLLCPLHVLALLTPRVLPQRRAQPEAYRLYLELLKCHVTSSLLSMEAGPNRDKIG KSIAEALQLSKVYGFSGTEFGHVVIMFVLAVVSKLIDSIFEDCGFPSAMVEGQESVNAID GPQPMDLDVKMGSTENQNEHREQLRRKNTLIALDVLHMMTADRKIQSFLRLIFLNMPERF SSLRQRLSSIEAQKVSLETLLPSGHKINELLINFWRVCKTDYQPNNKHILGVLGNMGSGG SLLGQLTGAGRPACWIIFDIYVENAIDGRHLSVISAIRIIKEMTKTMQVLNEASWQETFK ALWISALRLVQRAREPLEGPIPHLDARLCMLLALIPLSVAAILQEESDMLGAEGNKILPQ RQGLISSLQDLIQYSGLLVPPSSVVNAANAAASKAAIFKANYEAGVGNSSMMDQTDSSMK AAGNMLHLIIEACISRKLIDTSAYLWPGYVVPSGTLKDTALPQESPWLNFMKGSRLSGPL IDALVASPASSVAELDKLYSIALNGSEEEKTAAAKILCGASLVRGWNIQEHVVGMVVKLL SASLPSDSATSTPGSMSNYLAHMSTLNEILLGVSYGDAIHILSLYGMVPDVAVALMPICE AFGSIPPPPNHKSTILGEISVYTVFSCAFLCLLRLWKFYRPPQEYCLAGRGGSVKLELTL DYLLLMHNNHIEFSNSSASNRDSCNDMGSVNEVPAQLIYIDSFPKLRAWYFQNQACIASP LSGLCNKNPVHQVANKILNMICRKMNKGLRDLVDFLPASLAAIVSYFSAEITRGIWKPVP MNGIEWPSPGASLHSIEAEVKEILASAGVQINSCYPRFVINVPNTFIPLILPCKVYIIFF QVLDRSLEYIQGVIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCMRSPFGRD KDAVAQLIQSCFSSFLQSSSSGSDIIANRGVGALLGDSITNQGLRLPMAPGFIYLRTCRT FHDTYFVSEVILKQVIEWAHKLANGWCFNGPPQLKSGRTPLSCAASMVQQVALLGGGLLC IAGGPLVVQVLYEETLPTLLLSARDQSLKGPGPVSSTLQGYAMANMLFYCGSLLWGADRT SPVMKLSFLSRRPRVVRTHMDFIAGVLDGHILLGCDPGTWKAYVSQFMFLVVKFVPSWLR DIKLDTLKKIAAGLRSWHEHDLALSLLERGGPQAISVVVETFL

Transcript Sequence

Transcript ID	Zm00001d022429_T039
Transcript Infomation	cdna chromosome:B73_RefGen_v4:7:177477657:177491074:-1 gene:Zm00001d022429 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mediator of RNA polymerase II transcription subunit 33A
Sequence	GGCCCACCTCTAAGTGAGTGCCGCCCATCAGCCCAAAGTCAACCGGTCTCCCACGATCGC GACCGAAGGCGACGGGAGGGATCCAACGGTCCAGATCTCTCTCGCACTGTCCCCTCCCCC CTCTCATTTTTCACACGAACCCAGCCGTTGCAGGCCAGACAAACGGGACAAACAAAGAGA AAGAAAGAAAACTAGAGGCGCCCGCACGCAAAATCCAAACCCAAACCCTCGGCGAGGACG CCACCGTGGCGACCGCGGTGGATGCAGCGGGTCTGGTGCCCGCCGACCTGGAGCGGCGGG TGATGGCGGCGGTGAAGGCGTCGGAGGCGCGCGGGGACCCGCCGCTTCTGCAGGTGGTGG AGCTATCCCGCATCGTCGCCGTGGAGGGCGCGGGGACCCTCTCCAGCGCCGACCTTGCCA GGATCCTCGTCTCCAACCTATGCTTCGCGCACAACTCGCCCTCGCTCTGGAAGCTCCTGG GCCAGGCCGTCGTGTCCCGCCTCCTCTGCCCGCTCCACGTTCTCGCACTCCTCACCCCTA GGGTGCTGCCGCAGCGGCGAGCGCAGCCTGAGGCGTACCGCCTGTACCTGGAACTCCTCA AGTGTCATGTCACGTCGTCCTTACTGTCGATGGAGGCTGGGCCTAATCGTGACAAGATAG GGAAGTCCATTGCTGAAGCTTTGCAACTATCAAAGGTTTATGGATTTTCTGGAACAGAGT TTGGACATGTTGTCATTATGTTTGTGTTGGCTGTTGTCAGTAAACTGATTGATAGTATAT TTGAGGATTGTGGCTTTCCATCTGCGATGGTAGAGGGGCAAGAGAGTGTCAATGCCATCG ATGGGCCACAGCCTATGGACTTAGACGTTAAAATGGGATCTACTGAGAACCAAAATGAGC ATCGCGAACAGTTACGTCGGAAGAACACTCTCATCGCTTTGGACGTGTTGCATATGATGA CTGCTGATAGAAAGATTCAATCATTTCTGCGCTTGATATTCCTGAACATGCCTGAAAGGT TCAGTTCTCTACGCCAGAGGTTGAGTTCTATTGAAGCACAGAAGGTGTCCTTGGAGACTC TACTGCCTTCTGGACACAAAATTAATGAATTGTTAATAAATTTCTGGAGAGTTTGCAAAA CAGACTATCAACCGAATAACAAACACATTCTTGGTGTTCTTGGTAATATGGGATCTGGTG GATCCCTTCTGGGCCAACTTACTGGAGCTGGGAGGCCTGCCTGCTGGATAATATTTGATA TATATGTGGAGAATGCAATTGATGGGAGGCATCTAAGTGTTATATCAGCTATCCGAATTA TAAAAGAAATGACCAAGACAATGCAAGTGCTTAACGAAGCAAGCTGGCAGGAAACATTTA AAGCTCTTTGGATTTCTGCCCTTCGTCTTGTACAACGGGCTAGAGAACCTCTTGAAGGAC CAATTCCTCATCTAGATGCAAGGTTATGCATGTTGTTAGCTCTTATACCATTATCAGTTG CTGCGATTCTTCAAGAAGAAAGCGATATGCTTGGAGCTGAAGGAAACAAAATTCTTCCAC AAAGACAAGGGCTTATATCGTCTCTCCAGGATCTGATCCAGTATTCAGGACTTCTTGTGC CACCTTCATCAGTGGTGAATGCAGCTAATGCTGCAGCCTCAAAAGCGGCAATATTTAAGG CCAACTATGAGGCTGGGGTTGGCAACTCTAGCATGATGGACCAGACTGACTCTTCAATGA AAGCTGCTGGGAACATGCTCCATCTTATTATTGAAGCCTGTATCTCGAGAAAGTTGATCG ATACATCTGCTTATTTATGGCCTGGTTATGTTGTACCATCTGGGACTTTAAAAGATACAG CTTTGCCCCAAGAATCCCCTTGGTTAAACTTTATGAAAGGGTCTCGACTTTCAGGACCCC TTATTGATGCTCTGGTCGCATCTCCTGCTTCAAGTGTTGCGGAATTGGACAAATTATACA GTATAGCATTAAATGGTTCAGAAGAAGAAAAAACAGCTGCTGCAAAGATTCTTTGTGGTG CATCACTTGTTCGTGGCTGGAACATTCAGGAACATGTGGTCGGTATGGTGGTCAAGCTAT TATCAGCTTCTTTACCCTCAGATTCTGCAACTTCAACTCCTGGGAGCATGAGCAACTACC TTGCTCATATGTCTACATTAAACGAAATCTTACTCGGTGTGTCTTATGGTGATGCCATCC ACATTCTTTCATTGTATGGAATGGTTCCAGATGTTGCTGTGGCGTTAATGCCAATATGTG AGGCTTTTGGGTCAATACCACCGCCACCTAATCACAAGTCTACCATTCTTGGTGAAATAT CTGTTTATACAGTCTTCTCTTGTGCATTCCTTTGTCTTCTTCGTTTGTGGAAGTTTTATA GACCTCCTCAAGAGTATTGTCTTGCTGGTCGTGGAGGCTCAGTAAAGCTGGAACTGACTC TGGACTATCTGTTGTTGATGCACAATAATCACATTGAGTTCTCAAATTCATCTGCCTCTA ATAGGGATTCTTGCAATGATATGGGCTCAGTAAATGAGGTTCCTGCTCAGCTGATTTATA TTGATTCTTTTCCCAAGCTAAGGGCTTGGTATTTCCAGAATCAAGCTTGCATTGCTTCTC CACTTTCTGGTCTTTGCAACAAAAACCCTGTTCATCAAGTTGCGAACAAAATTTTGAATA TGATTTGCCGAAAAATGAATAAAGGCTTAAGGGATCTTGTGGACTTTTTGCCTGCTTCTC TTGCTGCAATTGTGAGCTACTTCTCAGCAGAAATTACACGAGGAATCTGGAAACCTGTCC CAATGAATGGAATTGAATGGCCTAGTCCCGGTGCTTCTCTTCATTCCATTGAAGCTGAAG TAAAGGAAATTCTTGCCTCTGCTGGTGTTCAGATTAACAGCTGCTATCCACGCTTCGTCA TCAATGTGCCAAATACCTTTATTCCACTTATATTGCCATGTAAAGTGTACATTATATTCT TTCAGGTGCTAGATAGGAGTTTGGAGTACATTCAAGGGGTCATTGGACAGGCGCTAGAGA ACTGTGCAGGGGGGAGTTCCTGGCCAAGCATGCCCATTATTGGGGCATTGTGGACACAGA AAGTGCGAAGATGGCATGACTTCATCGTCCTCTCTTGTATGCGTTCTCCATTCGGCAGAG ACAAAGATGCAGTTGCGCAGCTCATCCAAAGTTGCTTCTCGTCCTTTCTGCAGTCTTCAT CCAGTGGTTCTGATATAATTGCAAACCGTGGAGTTGGGGCTTTACTAGGGGACTCAATCA CGAATCAAGGTCTTAGGCTCCCAATGGCACCTGGTTTCATCTACTTGAGAACATGTCGAA CTTTCCATGACACTTACTTTGTTAGTGAAGTGATCCTTAAGCAAGTGATTGAGTGGGCTC ACAAACTTGCAAACGGATGGTGTTTCAATGGTCCTCCGCAGTTGAAATCAGGGCGGACAC CACTATCTTGTGCAGCATCCATGGTGCAGCAGGTCGCGTTGCTTGGTGGAGGTCTCCTAT GCATAGCAGGTGGACCACTTGTGGTCCAGGTGTTGTATGAGGAAACACTGCCAACACTGC TGCTATCAGCCAGAGATCAGAGTTTGAAAGGCCCTGGGCCAGTTTCTAGCACACTCCAAG GTTACGCCATGGCCAACATGCTCTTCTACTGTGGTAGCCTGCTTTGGGGAGCGGATAGGA CTTCTCCTGTCATGAAATTGTCCTTCCTCTCGAGGCGGCCACGGGTGGTGAGAACCCACA TGGATTTCATAGCTGGTGTGTTGGACGGACACATTCTTCTGGGCTGTGACCCGGGTACGT GGAAAGCGTATGTGTCGCAATTTATGTTCCTGGTGGTGAAATTTGTTCCGTCATGGTTGC GGGACATAAAGCTGGACACGCTAAAGAAGATAGCAGCTGGACTTCGGAGCTGGCACGAAC ACGACCTTGCTCTGTCTCTTCTTGAACGAGGAGGACCACAAGCAATCTCTGTTGTAGTCG AGACCTTTCTGTAA