Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d022395_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:7:176675147:176679923:-1 gene:Zm00001d022395 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhythmically expressed protein

Sequence

ATGGCGGTGGCGCGGCTACGCGCGGTCGCCGCCGCCGTGCTGCAGCCGGCGCTCGCCGCG
GGCGGCCGCGGCGAGAGGCGGCCGCTCGGGACGGCGGCGGAGGTGGCCGCGGGCGCGGGC
CCGGGGGCTGCGAGGTGGGAGCTCTTGGGCGCGCGGGAGTACTACGACTACCGCCGCGCC
ATGTACGGCGACATCACGCACAAGGCCATCCTCGTCGACGCCGCCGGCACGCTGCTCGCC
CCCACCGAGCCCATGGCGCAGGTGTACAGGACGATAGGCCAGAAGTACGGAGTGAATTAC
TCAGAGGATGAGATTCTGATGCGGTACCGGCTAGCTTATGCGCAGCCATGGGGTCGATCG
CGTCTGAGGTATGTCGATGACGGAAGGCCCTTTTGGCAACATATAGTGAGCTCATCTACC
GGCTGCTCAGATCTACAGTATTTCGAGGAACTGTACCAGTACTACACAACTGAGAAGGCC
TGGCGTCTCTGCGACCCAGACGCTGGACGTGTTTTCGAGGCGCTGAGGAGGGCTGGCGTC
AAAACAGCCATCGTGTCCAACTTCGACACTCGTCTTCGGCCGCTTTTACAGGCGCTGAAA
TGCGACGGCTGGTTCGACGCAGTTGCTGTGTCTGCTGAGGTTGCAGCAGAAAAGCCGAAC
CCCACAATATTCTTGAAGGCCTGCGAGCTGCTAGGAGTGAAACCTGAAGAAGCGGTGCAC
ATTGGTGATGACCGTAGGAACGACTTATGGGGAGCGAGGGATGCAGGCTGCGATGCCTGG
CTTTGGGGCAGTGACGTTTACTCCTTCAAGGAGATCGCGGAGAGGATCGGAGTTGAGGTG
TAG

Peptide Sequence

PEP ID

Zm00001d022395_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:7:176675147:176679923:-1 gene:Zm00001d022395 transcript:Zm00001d022395_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhythmically expressed protein

Sequence

MAVARLRAVAAAVLQPALAAGGRGERRPLGTAAEVAAGAGPGAARWELLGAREYYDYRRA
MYGDITHKAILVDAAGTLLAPTEPMAQVYRTIGQKYGVNYSEDEILMRYRLAYAQPWGRS
RLRYVDDGRPFWQHIVSSSTGCSDLQYFEELYQYYTTEKAWRLCDPDAGRVFEALRRAGV
KTAIVSNFDTRLRPLLQALKCDGWFDAVAVSAEVAAEKPNPTIFLKACELLGVKPEEAVH
IGDDRRNDLWGARDAGCDAWLWGSDVYSFKEIAERIGVEV

Transcript Sequence

Transcript ID

Zm00001d022395_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:176675147:176679923:-1 gene:Zm00001d022395 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhythmically expressed protein

Sequence

CAGAAAAAAAGGAGAGTTTATGTGGCCTGAATCTCACACTCCAATGACGACGCAGAAATT
TGATTCAGAAGATCTAAGTTTGACAGCATCGTTCGTTCGCTCGCAAGTTGGAGGAAACGG
GGGGTGCTTGTGGTTCAGGTAGATCGCTTGCCGTCTGCGTCTGGGCCAAGCGAAGCGGCC
GAGCGATCCCTGTTCGGTGAGTGGGGGCCACATGTCCGGCCGGCCACGGGTGCGATCAGA
CTCGGAGCCGCCGCCGCGCCCACGGTGCGCGCTGCGAGGTCGCGGCGTCGCGGCCACACG
TCTAGCGAGCACGGCCGGGAAAATGATATCTGTTCAGACCACCACTCGGATAAAGCGTAC
CAACTGCAGTCGGTGTCCGTTTCTTCTCCGGGGACTGTAATTGTACAACTGTCCAAACAG
GTGGGCTAATAACTAAATCAATTTTCAGTTAACATCTTAGCTGCAGCGCTAGCCAGCTAC
TCCACCAGTAGTTTGCAAAAAAAACACGACCGATGAGGTGTGTGTCCAGTTTAGCAACCA
GGTTTAACAAACTCGCTCACAAATTTGGGAATTTTTTTTTTGCTGTAGCCCGTCTACAAA
CTAGGATGTTTGCAGCACCTCACAAAAGTAGATAAAACGTTACCTAGTGGATCTGCAGGT
AAGGTCTATCCTTCTTTTTGTGAGGGGCTGTAACCATCCTGGTTTGTAGTCGGGCGGCTG
CAGCATTTTTTCTCTCGAAATTGGAACGTTGCCGGCTGCACCAGACCCGTCTTGGAACGG
GTGCCGAAGCGGGGAGGGGTTGATGTCTTGATAAATTTGGAGCGCTGATACACTACTCCA
GTGATAGACTTTGATACGACTAAAATCATGTAATGACTCATAATTTACAGTTCAGAACAA
GAGACAACAACAGCCATATGTTTGAAATTGGTGTTACTTCAGGTGGATCGTACGTGAAAC
ATTTTCCTTGTATTCCGGCGCGGTCCATTAAAAAAAATTCGACGGGATACTACATACACT
ACCAACCAAGCTGGAGAGCACGAACCTGGTCTCTCTAAACTAAACTAAGCTAATGCAAAG
GTGATGTGTATTGCAAGCTAAAGAATAATAAGGTAATAACTTTGTGCTGCTTTTGTCGTC
GCGACGGTACATGACAAAGCCGTAGGACGTGGCAGGACGAGAAACCATTTGGCTCTGTGG
CATGCGGACTCATGTTGATGGAAACGGCTTTATTTCGTGTCCATTGGAACGAACGAACGA
ATGAATAAAAGAATTGATATATCAATAATTTCGAGCGACTTGGTCTGGAGTCCAACCAAC
CTCACTCCTCCCACCTGATCGAGCAGAAGAGCACTTCCAAAAGTCGGTGTTCAGATTCAG
AAAGCAAGTGCCATGCTCTATCCAATCCATCTACTCTATTCGGATATACTAAAAGATAGA
AATATGCTGGAATTTTGTTTGCAAACATCCACGACGACCCATCCACGAATAAAGCGTTGC
AAATCTTGGTGGTGACTGTCTGACTGATATGTCACCTCCATGTTTTCATGATGATCCAAC
TCTGACCAAACCAAAAACATGTTCAAATAAATGATCCATCCGATCCGAAGTTGCAAACAC
CACCTGAAATTGAAAAAACCCAGCCGCCGAACGAACGAACGAGCAAGGCCTATAAACCTC
CTCACATCACAGTCACCACACCACTCGCCACGCCTTCGCCGCCTATAAACCGCCACCACT
AGCCCCCCCTGCTCCGAGGACCACAGGAGCCCACGGCACGGCGACGCCATCGACCTCACT
CCATCCCTCCCTCCCTCCCTCCCTCACTCCTCCTCTTCGCCGCCTCGCAAGCAATGGCGG
TGGCGCGGCTACGCGCGGTCGCCGCCGCCGTGCTGCAGCCGGCGCTCGCCGCGGGCGGCC
GCGGCGAGAGGCGGCCGCTCGGGACGGCGGCGGAGGTGGCCGCGGGCGCGGGCCCGGGGG
CTGCGAGGTGGGAGCTCTTGGGCGCGCGGGAGTACTACGACTACCGCCGCGCCATGTACG
GCGACATCACGCACAAGGCCATCCTCGTCGACGCCGCCGGCACGCTGCTCGCCCCCACCG
AGCCCATGGCGCAGGTGTACAGGACGATAGGCCAGAAGTACGGAGTGAATTACTCAGAGG
ATGAGATTCTGATGCGGTACCGGCTAGCTTATGCGCAGCCATGGGGTCGATCGCGTCTGA
GGTATGTCGATGACGGAAGGCCCTTTTGGCAACATATAGTGAGCTCATCTACCGGCTGCT
CAGATCTACAGTATTTCGAGGAACTGTACCAGTACTACACAACTGAGAAGGCCTGGCGTC
TCTGCGACCCAGACGCTGGACGTGTTTTCGAGGCGCTGAGGAGGGCTGGCGTCAAAACAG
CCATCGTGTCCAACTTCGACACTCGTCTTCGGCCGCTTTTACAGGCGCTGAAATGCGACG
GCTGGTTCGACGCAGTTGCTGTGTCTGCTGAGGTTGCAGCAGAAAAGCCGAACCCCACAA
TATTCTTGAAGGCCTGCGAGCTGCTAGGAGTGAAACCTGAAGAAGCGGTGCACATTGGTG
ATGACCGTAGGAACGACTTATGGGGAGCGAGGGATGCAGGCTGCGATGCCTGGCTTTGGG
GCAGTGACGTTTACTCCTTCAAGGAGATCGCGGAGAGGATCGGAGTTGAGGTGTAGCAAG
TTGTTTCTCCTCGGTCGGCGCCACTTACCCCGGGCGTCTTGTACATATTCCCAAGAGAAA
TAACAAGAGCATCAGTTTCTCCTGTGTGCGACTGTGCCAGGCCTTTTGTAGCAAATACCG
ATGTGCATTTCCACGCTTCCCTGTAGCAAATACTGATGTGCAGGAGCTCTGTCCGGGTTG
AATTCACAGAGAAGAGGGTACCAAAAAGGACAGCTAAAATGCAATACAGAGAAACAAGAA
CAGCAAACTCACACAAATAATGGCGAAAGCTTCTCTTTTGCTCAACAGCTAAAGAATCAT
CGATTTGGTCACATCAATTGCTTTGCGAATTATTCTCTCCATAACTTTTAGTTGTCGCTA
GATAGTTTAATTTTGCACTAAGAAACGGTAAATATA