Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d022369_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:7:176239173:176241946:1 gene:Zm00001d022369 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCCACCGCGCGCCTTGCCCACTACCTCAACACCCGCATCTAGGCGCGTCGTCTACGTC
CTCCTCGCGGCGCTCGCCACAGCGCCGTTCCTGCTCCTCCTCCTCTACGGTGGCGCCTCC
CCGTCTGCGCTCTGCCCCACCTCCTACCGCACTCCCCGCCGCCTCCCGTACCCGTCCGTG
CTCTGGTCCAAGGTGCCCCCGCTCCCGGCGCTCTCCACCTCGCCGCACCCGGACCTCCGC
GGCTCTCGCTGGATCGTCTTCACCGCGTCGCCGCACGCCCCGCGGCACCGCCCGCTGCGC
GCGGTCCCCGGGTGGCAGGTCCTCGCCGTCGCCGACGAGGCTACCCCCGCGGACTGGTCC
CACCCAGGCGCCGTGCTGCTCACGCTCACCGACCAGGGCCGCCTTGGATTCCGCTCCGTC
GCTTTCCTTCCGGCCCGGGGCCCGGCGCGCAAGGCAGCGGCGTACCTCTTCGCCGTACAG
CGCGGGGCGCGGGTCATCTACGACGCCGACGCGCGCAACGCCGTCCTGGGCGGGAACCTC
ACCAGGCACTTCGATGTGGATCTGGACCAGCGCCACGGAGGCGCCGTGCTGCTGCAGTAC
AGCCACGCCAATCCTAACCGGACGATCGTGAACCCGTTCGTGCACTTTGGGCAGCCATCG
ATCTGGCCGCGTGGGCTGCCGCTGGAGAAGGCCGGGGAGCTGGATGCTGAGGAGTTCTAC
ACTGAGATATTCAGTGGTGGCCAATTCATGCAGCAAGGGATGTGTAATGGCCTTCCAGAT
GTTGATTCGGTGTTCTACTTCACTCGGAAGTCATTGGAGATGGAGGCATTTGATTTCCAG
TTTGACGCGGATGCACCCAAGGTCGCGCTGCCGCAGGGCATGATGACACCAGTCAACTCT
GTTAACACATTGTTCCACTCGCCGGCGTTCTGGGGGCTTGCGTTGCCAGTGTCAGTGAGC
CCAATGGCATCAGATGTCATACGCGGATACTGGGCTCAGAGGATACTATGGGAGATTGGT
GGCTACCTAGTTGTCTACCCACCAACTGTACACCGCATAGATAACGTGCGTGGTCACCCA
TTTGATGAAGAGAAGGATCTCCATGTCAATGTAGGGAAGCTGATAAAGTTCCTAATGGAG
TGGCGATCCAGTAAGCTGACACTATTCGAGCGGATTCTTGATCTAAGCTATGCGATGACA
GAGGAGGGATTCTGGAGTGAGAAGGATTTGCATTTCATGACTGCTTGGCTGCAAGATCTG
GTTGCTATCGGGTATCGACAGCCACGGTTGATGTCATTGGAGATTGACCGGCCCAGAGCA
ACCATTGGACATGGTGACAAGAAGGGGTTTGGTCCCAAGAAGCTGCCTTCAGTGCATCTT
GGGGTTGAAGAGATTGGGGAAGTAAGCACTGATATTGGCAATCTAATAAAATGGAGGAAG
CATTTTGGTGATATTGTGCTCATAGTGCATTGCACCGAACTTGTGGACCGAACTGCATTA
GAGTGGAGGCTGCTTTATGGTCGGATATTTCGAGCAGTTGTTGTTCTTTCAGAGCAAAGC
AATTCTGATCTTGCTGTGGAATTCAGCAACTTGACACAAGCCTACAACCATTTTGCGTTG
CAGGTACTTGCCGAAGGTGTTTGA

Peptide Sequence

PEP ID

Zm00001d022369_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:7:176239173:176241946:1 gene:Zm00001d022369 transcript:Zm00001d022369_T002 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MPPRALPTTSTPASRRVVYVLLAALATAPFLLLLLYGGASPSALCPTSYRTPRRLPYPSV
LWSKVPPLPALSTSPHPDLRGSRWIVFTASPHAPRHRPLRAVPGWQVLAVADEATPADWS
HPGAVLLTLTDQGRLGFRSVAFLPARGPARKAAAYLFAVQRGARVIYDADARNAVLGGNL
TRHFDVDLDQRHGGAVLLQYSHANPNRTIVNPFVHFGQPSIWPRGLPLEKAGELDAEEFY
TEIFSGGQFMQQGMCNGLPDVDSVFYFTRKSLEMEAFDFQFDADAPKVALPQGMMTPVNS
VNTLFHSPAFWGLALPVSVSPMASDVIRGYWAQRILWEIGGYLVVYPPTVHRIDNVRGHP
FDEEKDLHVNVGKLIKFLMEWRSSKLTLFERILDLSYAMTEEGFWSEKDLHFMTAWLQDL
VAIGYRQPRLMSLEIDRPRATIGHGDKKGFGPKKLPSVHLGVEEIGEVSTDIGNLIKWRK
HFGDIVLIVHCTELVDRTALEWRLLYGRIFRAVVVLSEQSNSDLAVEFSNLTQAYNHFAL
QVLAEGV

Transcript Sequence

Transcript ID

Zm00001d022369_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:176239173:176241946:1 gene:Zm00001d022369 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AACACAAAGCAGTCAAACAATTTCACCGGCGGGCGGCGGCGGCCACCAGCGCGTCGCCGC
GACGTTAGCGCTTGATCCGGCGGCGGTGACTCAGCCCCTTTCTCTCCCCCAACGCTCAAA
TGCCACCGCGCGCCTTGCCCACTACCTCAACACCCGCATCTAGGCGCGTCGTCTACGTCC
TCCTCGCGGCGCTCGCCACAGCGCCGTTCCTGCTCCTCCTCCTCTACGGTGGCGCCTCCC
CGTCTGCGCTCTGCCCCACCTCCTACCGCACTCCCCGCCGCCTCCCGTACCCGTCCGTGC
TCTGGTCCAAGGTGCCCCCGCTCCCGGCGCTCTCCACCTCGCCGCACCCGGACCTCCGCG
GCTCTCGCTGGATCGTCTTCACCGCGTCGCCGCACGCCCCGCGGCACCGCCCGCTGCGCG
CGGTCCCCGGGTGGCAGGTCCTCGCCGTCGCCGACGAGGCTACCCCCGCGGACTGGTCCC
ACCCAGGCGCCGTGCTGCTCACGCTCACCGACCAGGGCCGCCTTGGATTCCGCTCCGTCG
CTTTCCTTCCGGCCCGGGGCCCGGCGCGCAAGGCAGCGGCGTACCTCTTCGCCGTACAGC
GCGGGGCGCGGGTCATCTACGACGCCGACGCGCGCAACGCCGTCCTGGGCGGGAACCTCA
CCAGGCACTTCGATGTGGATCTGGACCAGCGCCACGGAGGCGCCGTGCTGCTGCAGTACA
GCCACGCCAATCCTAACCGGACGATCGTGAACCCGTTCGTGCACTTTGGGCAGCCATCGA
TCTGGCCGCGTGGGCTGCCGCTGGAGAAGGCCGGGGAGCTGGATGCTGAGGAGTTCTACA
CTGAGATATTCAGTGGTGGCCAATTCATGCAGCAAGGGATGTGTAATGGCCTTCCAGATG
TTGATTCGGTGTTCTACTTCACTCGGAAGTCATTGGAGATGGAGGCATTTGATTTCCAGT
TTGACGCGGATGCACCCAAGGTCGCGCTGCCGCAGGGCATGATGACACCAGTCAACTCTG
TTAACACATTGTTCCACTCGCCGGCGTTCTGGGGGCTTGCGTTGCCAGTGTCAGTGAGCC
CAATGGCATCAGATGTCATACGCGGATACTGGGCTCAGAGGATACTATGGGAGATTGGTG
GCTACCTAGTTGTCTACCCACCAACTGTACACCGCATAGATAACGTGCGTGGTCACCCAT
TTGATGAAGAGAAGGATCTCCATGTCAATGTAGGGAAGCTGATAAAGTTCCTAATGGAGT
GGCGATCCAGTAAGCTGACACTATTCGAGCGGATTCTTGATCTAAGCTATGCGATGACAG
AGGAGGGATTCTGGAGTGAGAAGGATTTGCATTTCATGACTGCTTGGCTGCAAGATCTGG
TTGCTATCGGGTATCGACAGCCACGGTTGATGTCATTGGAGATTGACCGGCCCAGAGCAA
CCATTGGACATGGTGACAAGAAGGGGTTTGGTCCCAAGAAGCTGCCTTCAGTGCATCTTG
GGGTTGAAGAGATTGGGGAAGTAAGCACTGATATTGGCAATCTAATAAAATGGAGGAAGC
ATTTTGGTGATATTGTGCTCATAGTGCATTGCACCGAACTTGTGGACCGAACTGCATTAG
AGTGGAGGCTGCTTTATGGTCGGATATTTCGAGCAGTTGTTGTTCTTTCAGAGCAAAGCA
ATTCTGATCTTGCTGTGGAATTCAGCAACTTGACACAAGCCTACAACCATTTTGCGTTGC
AGGTACTTGCCGAAGGTGTTTGATCGGTTTGGAGGTGCCCAAGGATTTCTGTTCCTTCAA
GATCGTATGGTCTTCAATTACTGGAACCTCTTGAATGCTGATAAGGCTAAGCTCTGGATA
ACCAACCAGGTGAAGGAATCTTGGTCGGATGTGCCTCTACATGGTAACAACATTGAGTGG
TTTGTGAACCAAGGGGATATGATTAAAAAGGCGGTCAGCAATTTTCCATCTCAATATCAA
GATAACTACAGGAGAAGTGTAGGTGAAAATAATCTGATTCGTTGCAGCAGTGAGATATTT
TACGTACCTCAACGGTACACCCGTGATTTCTCAGATCTTGTAAAAGTTATTGGGAGCTTA
GACATTCATCACAGTTTTGCAGTCCCCATGTTATTCCTTGCGATCGATTCACCGAGCAAC
TTTGAGTCCAAAGCTTTGACAAAACTTGTCTACAGGGCAGATCTTCCATCAGATACAACT
CTTTCAACAATTTATACTACTGAAGCACATGCAGTGTACCCTGTGAAGGTTCAGAACGAG
ATGGATTTTGTAAAACTGATAAGGGCTATGGCTTTAGGAGATCCATTTCTTATGGAATTG
GTCTGATCTAGGATTGCCTTTTTTTTTAATTCGTCAGGTTGGCGATAGAAAACAAAACAA
CGAGATAATGTTTGGTTCGTCTTTGTCCTCCCTTCTTCCATATGAGGATGAGGATAATCT
AGTGTTACTCGATCTCAGTTTACATGTACAATCAGATAATACAGGCTTACTTTGTTGAGC
TAAAAAACGAAATTC