Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d022206_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:7:172841272:172852483:1 gene:Zm00001d022206 gene_biotype:protein_coding transcript_biotype:protein_coding description:4-alpha-glucanotransferase DPE1 chloroplastic/amyloplastic
Sequence

ATGGTTCTCGCGCGAGTCCTCCCGCTGCCCGCCCCGTCGTCCGCGCCCCACCGCCGCTTA
CTCCTGCCGACTCAGGCGGCGCCGGCCCCGGCGCGTGTGCTCACCGTGCGGGCCGTCGCC
TGCCGCGCAGCGAACGCCATGGCGGCCGTTGCTCTGGACCCGCCCGCGGTCGCTCCGAGC
CCCGCAGAGGTCGCAGCCGTGGGCGTCGGGGAGGAGCTGCCGGAAGGGTACGATCAGATG
ATGCCGACCGTGGAGCCGTCGCGGAGGCGGCGCGCCGGGCTGCTGCTGCATCCTACTTCG
TTGCGGGGCCCGCACGGCATCGGCGACCTCGGGGACGAGGCGCTTGCTTTCCTGCATTGG
CTCCGCGACGCCGGCTGCACGCTCTGGCAGGTTCTACCACTTGTTCCTCCAGGTAGGACG
GCTGGGGAGGATGGGTCTCCTTATTCTGGACAGGATGCCAACTGTGGCAATACCCTTTTG
CTATCCCTTGAGGAGCTTGTAAAAGATGGTCTACTGATGTCAGATGAACTTCCTGATCCT
GTGGATACAGAGTATGTTGAATTTGACACTGTTGCAAATCTGAAAGAACCACTTATTGCA
AAGGCAGCAGAGAGGCTCCTACTAAGCCATGGAGAGCTCAGAACACAATATGACTGCTTC
AAAAAAAATCCAAATATATCAGGTTGGCTTGAAGATGCAGCTCTTTTTGCTGCTATTGAC
AAAAGCATCAATGCATTCTCTTGGTACGAGTGGCCTGAACCTCTGAAAAATCGCCATCTT
GGAGCCTTGGAAGATATATATGAAAAACAGAAGGATTTTATAGAGACATTTATGGCTCAG
CAGTTCTTATTTCAAAGGCAATGGCAGCGGATTCGTAAATATGCACAAAAGCTGGGTATC
AGCATCATGGGTGACATGCCTATATATGTTGGCTACCATAGCGCAGATGTTTGGGCGAAC
AGGAAATCATTTTTGCTGGACAAAAACGGTTTCCCCACTTTCGTTAGTGGCGTTCCACCT
GATGCATTTAGTGAAACGGGTCAACTATGGAACAGTCCATTGTACGACTGGAAAGCTATG
GAAGCAGATTGTTTTTCATGGTGGATAAAGAGGATTAAACGTGCCCTTGATTTGTATGAT
GAATTCCGTATTGACCATTTCCGGGGGCTTGCGGGTTTTTGGGCAGTCCCTTCTGATGCA
AAAGTAGCACTGGTTGGAAGCTGGAGGGCTGGACCAAGGAATAGCTTTTTTGACACGCTC
TTCAAAGCTGTTGGTAGAATAGATATAATAGCAGAAGATCTGGGGGTAATTACTGAAGAT
GTCGTTCAGCTAAGGAAATCCATTGGGGCCCCTGGGATGGCAGTTCTCCAGTTTGCTTTC
GGAGGTGGTTCTGACAACCCTCATTTGCCACACAACCATGAAATGGATCAAGTTGTGTAC
ACTGGAACACATGATAACGATACAGTTCTTGGCTGGTGGCAAAATTTACCAGAGGAAGAA
AAGAAAATTGTGATCAAGTATCTACCAGAAGCCGAGAATATTGACATAACATGGACACTG
ATTACGGCTGCCCTCTCTTCCGTCGCGAGGACTTCCGTGGTAACCATGCAGGACATTCTT
GGCCTTGACAGTTCTGCTAGAATGAATACTCCAGCTACCCAGAAAGGAAACTGGAGGTGG
AGGATACCGAGCTCTGTTGGCTTCGACAGCCTCAGCCCTGAAGCAGCAAAGCTGAAGGAG
CTGCTTGCGCTGTACAATCGACAGTGA

Peptide Sequence

PEP ID

Zm00001d022206_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:7:172841272:172852483:1 gene:Zm00001d022206 transcript:Zm00001d022206_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:4-alpha-glucanotransferase DPE1 chloroplastic/amyloplastic
Sequence

MVLARVLPLPAPSSAPHRRLLLPTQAAPAPARVLTVRAVACRAANAMAAVALDPPAVAPS
PAEVAAVGVGEELPEGYDQMMPTVEPSRRRRAGLLLHPTSLRGPHGIGDLGDEALAFLHW
LRDAGCTLWQVLPLVPPGRTAGEDGSPYSGQDANCGNTLLLSLEELVKDGLLMSDELPDP
VDTEYVEFDTVANLKEPLIAKAAERLLLSHGELRTQYDCFKKNPNISGWLEDAALFAAID
KSINAFSWYEWPEPLKNRHLGALEDIYEKQKDFIETFMAQQFLFQRQWQRIRKYAQKLGI
SIMGDMPIYVGYHSADVWANRKSFLLDKNGFPTFVSGVPPDAFSETGQLWNSPLYDWKAM
EADCFSWWIKRIKRALDLYDEFRIDHFRGLAGFWAVPSDAKVALVGSWRAGPRNSFFDTL
FKAVGRIDIIAEDLGVITEDVVQLRKSIGAPGMAVLQFAFGGGSDNPHLPHNHEMDQVVY
TGTHDNDTVLGWWQNLPEEEKKIVIKYLPEAENIDITWTLITAALSSVARTSVVTMQDIL
GLDSSARMNTPATQKGNWRWRIPSSVGFDSLSPEAAKLKELLALYNRQ

Transcript Sequence

Transcript ID

Zm00001d022206_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:172841272:172852483:1 gene:Zm00001d022206 gene_biotype:protein_coding transcript_biotype:protein_coding description:4-alpha-glucanotransferase DPE1 chloroplastic/amyloplastic
Sequence

ACTCTTCCCCGCGCGCCTGTCCCGTTGGCCGCGAATGGTTCTCGCGCGAGTCCTCCCGCT
GCCCGCCCCGTCGTCCGCGCCCCACCGCCGCTTACTCCTGCCGACTCAGGCGGCGCCGGC
CCCGGCGCGTGTGCTCACCGTGCGGGCCGTCGCCTGCCGCGCAGCGAACGCCATGGCGGC
CGTTGCTCTGGACCCGCCCGCGGTCGCTCCGAGCCCCGCAGAGGTCGCAGCCGTGGGCGT
CGGGGAGGAGCTGCCGGAAGGGTACGATCAGATGATGCCGACCGTGGAGCCGTCGCGGAG
GCGGCGCGCCGGGCTGCTGCTGCATCCTACTTCGTTGCGGGGCCCGCACGGCATCGGCGA
CCTCGGGGACGAGGCGCTTGCTTTCCTGCATTGGCTCCGCGACGCCGGCTGCACGCTCTG
GCAGGTTCTACCACTTGTTCCTCCAGGTAGGACGGCTGGGGAGGATGGGTCTCCTTATTC
TGGACAGGATGCCAACTGTGGCAATACCCTTTTGCTATCCCTTGAGGAGCTTGTAAAAGA
TGGTCTACTGATGTCAGATGAACTTCCTGATCCTGTGGATACAGAGTATGTTGAATTTGA
CACTGTTGCAAATCTGAAAGAACCACTTATTGCAAAGGCAGCAGAGAGGCTCCTACTAAG
CCATGGAGAGCTCAGAACACAATATGACTGCTTCAAAAAAAATCCAAATATATCAGGTTG
GCTTGAAGATGCAGCTCTTTTTGCTGCTATTGACAAAAGCATCAATGCATTCTCTTGGTA
CGAGTGGCCTGAACCTCTGAAAAATCGCCATCTTGGAGCCTTGGAAGATATATATGAAAA
ACAGAAGGATTTTATAGAGACATTTATGGCTCAGCAGTTCTTATTTCAAAGGCAATGGCA
GCGGATTCGTAAATATGCACAAAAGCTGGGTATCAGCATCATGGGTGACATGCCTATATA
TGTTGGCTACCATAGCGCAGATGTTTGGGCGAACAGGAAATCATTTTTGCTGGACAAAAA
CGGTTTCCCCACTTTCGTTAGTGGCGTTCCACCTGATGCATTTAGTGAAACGGGTCAACT
ATGGAACAGTCCATTGTACGACTGGAAAGCTATGGAAGCAGATTGTTTTTCATGGTGGAT
AAAGAGGATTAAACGTGCCCTTGATTTGTATGATGAATTCCGTATTGACCATTTCCGGGG
GCTTGCGGGTTTTTGGGCAGTCCCTTCTGATGCAAAAGTAGCACTGGTTGGAAGCTGGAG
GGCTGGACCAAGGAATAGCTTTTTTGACACGCTCTTCAAAGCTGTTGGTAGAATAGATAT
AATAGCAGAAGATCTGGGGGTAATTACTGAAGATGTCGTTCAGCTAAGGAAATCCATTGG
GGCCCCTGGGATGGCAGTTCTCCAGTTTGCTTTCGGAGGTGGTTCTGACAACCCTCATTT
GCCACACAACCATGAAATGGATCAAGTTGTGTACACTGGAACACATGATAACGATACAGT
TCTTGGCTGGTGGCAAAATTTACCAGAGGAAGAAAAGAAAATTGTGATCAAGTATCTACC
AGAAGCCGAGAATATTGACATAACATGGACACTGATTACGGCTGCCCTCTCTTCCGTCGC
GAGGACTTCCGTGGTAACCATGCAGGACATTCTTGGCCTTGACAGTTCTGCTAGAATGAA
TACTCCAGCTACCCAGAAAGGAAACTGGAGGTGGAGGATACCGAGCTCTGTTGGCTTCGA
CAGCCTCAGCCCTGAAGCAGCAAAGCTGAAGGAGCTGCTTGCGCTGTACAATCGACAGTG
AAGTCCGCTATTGCCATCGAAGTTCCTTCAATAAAATAGGCAACAAAATGTGAGCGGTTT
GGTTGCCAAGTTCTATGGTACGCGGCCCCGCACAGAGGTTGTGTTCTGGTTGGCTGGAAA
CTTGCGTGCACTGCAAGTTAAGACTTGAACATGAAGCACTATTGTATGTGTGTGTATTCT
CATTTTTTTATTAACCATTTTTTTGGTCGGGTCTATACAAGTGTTTTCCCCCCATTGCTT
TGCAGCAAAGCATTACCAATTTGGATCCGTTTCTTTCAGGTGACTTAGATTTACTAGTGT
AGTGTAATGTAACTCGAATTCCTTTAGGCCGCGTTCGTTTTGGCCGGTTTGGCCTATTCC
GGGCTTGGTTCCAGACTGAAAGAAATGACCCGGTTTGGAATCGGACCGTGTCTTCGAGAG
GTGTTCGTTAAGATCTGAATCAAAAATGAGAGCGGTCTGGTTT