Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d022202_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:7:172755429:172761354:-1 gene:Zm00001d022202 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:protein phosphatase homolog2 description: protein phosphatase homolog2
Sequence

ATGGGCTCTATGGAAGCGTCGACCGCGCCGGAGAACGGCTCCGCCGCCGGTGGCGGAGCC
GGCAACGGGGCGGGCGCCGCGTCGAACGGAGGAGGTGTTGAGAGGAGGCTGAGGTCCTCG
GCTGCGCCCGCGTCGTGGGCAGCCCAGCTTCCCCTGGAGGTGGGCACACGCGTGATGTGC
CGGTGGCGCGACCAGAAGCTCCACCCTGTCAAGGTCATCGAGCGCCGCAAGGGCTCCGCT
TCCTCTTCCCCCGCTGACTACGAGTACTACGTCCATTACACCGAGTTCAATAGAAGACTT
GACGAGTGGGTTAAGCTTGAGCAGCTTGATCTTGCTACTGTCGAGACCGATGTTGATGAG
AAAGTCGAAGATAAGGCAACAAGCTTAAAGATGACACGGCACCAGAAGCGTAAAATTGAT
GAAACACATGTGGAGCAAGGACACGAGGAGCTTGATGCAGCCAGCTTGCGGGAACATGAA
GAATTCACAAAAGTGAAAAATATTGCAAAGATTGAACTTGGGAGATATGAGATAGATACA
TGGTATTTCTCTCCTTTTCCACCAGAGTACAATGACTGCCCGAAGCTGTTTTTCTGTGAA
TTTTGCCTCAACTTCATGAAGCGCAAAGAACAGCTTCAGAGGCACATGAAGAAGTGCGAT
CTTAAGCACCCTCCAGGTGATGAAATCTATAGAAGTGGAACTCTTTCGATGTTCGAGGTT
GATGGGAAGAAGAACAAGGTTTATGGACAGAATCTTTGTTATCTGGCCAAGCTATTTCTT
GATCACAAGACATTGTACTATGATGTTGATTTATTCTTGTTTTATGTTCTCTGCGAATGT
GATGACCGGGGATGTCATATGGTGGGATATTTCTCTAAGGAAAAACACTCTGAAGAATCT
TATAATTTGGCTTGCATTCTCACTCTTCCCCCATACCAAAGAAAAGGATATGGGAAGTTC
CTGATTGCTTTCTCATATGAACTTTCCAAGAAGGAAGGTAAAGTTGGGACACCGGAGCGC
CCTCTTTCTGATCTTGGCCTGCTCAGCTATAGAGGTTATTGGACTAGAGTGCTTCTGGAA
ATTCTAAAGAAACATAAGGGTAACATATCTATAAAGGTAACACCCTTCTATCTAGATATA
CTTTTTTTGGTGTACAAATTTCAAAAGCTGATTAAGGTATGA

Peptide Sequence

PEP ID

Zm00001d022202_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:7:172755429:172761354:-1 gene:Zm00001d022202 transcript:Zm00001d022202_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:protein phosphatase homolog2 description: protein phosphatase homolog2
Sequence

MGSMEASTAPENGSAAGGGAGNGAGAASNGGGVERRLRSSAAPASWAAQLPLEVGTRVMC
RWRDQKLHPVKVIERRKGSASSSPADYEYYVHYTEFNRRLDEWVKLEQLDLATVETDVDE
KVEDKATSLKMTRHQKRKIDETHVEQGHEELDAASLREHEEFTKVKNIAKIELGRYEIDT
WYFSPFPPEYNDCPKLFFCEFCLNFMKRKEQLQRHMKKCDLKHPPGDEIYRSGTLSMFEV
DGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEES
YNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRVLLE
ILKKHKGNISIKVTPFYLDILFLVYKFQKLIKV

Transcript Sequence

Transcript ID

Zm00001d022202_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:172755429:172761354:-1 gene:Zm00001d022202 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:protein phosphatase homolog2 description: protein phosphatase homolog2
Sequence

TCACATCTGATCCGCTCCGGCTCCGACGACGAATGGGCTCTATGGAAGCGTCGACCGCGC
CGGAGAACGGCTCCGCCGCCGGTGGCGGAGCCGGCAACGGGGCGGGCGCCGCGTCGAACG
GAGGAGGTGTTGAGAGGAGGCTGAGGTCCTCGGCTGCGCCCGCGTCGTGGGCAGCCCAGC
TTCCCCTGGAGGTGGGCACACGCGTGATGTGCCGGTGGCGCGACCAGAAGCTCCACCCTG
TCAAGGTCATCGAGCGCCGCAAGGGCTCCGCTTCCTCTTCCCCCGCTGACTACGAGTACT
ACGTCCATTACACCGAGTTCAATAGAAGACTTGACGAGTGGGTTAAGCTTGAGCAGCTTG
ATCTTGCTACTGTCGAGACCGATGTTGATGAGAAAGTCGAAGATAAGGCAACAAGCTTAA
AGATGACACGGCACCAGAAGCGTAAAATTGATGAAACACATGTGGAGCAAGGACACGAGG
AGCTTGATGCAGCCAGCTTGCGGGAACATGAAGAATTCACAAAAGTGAAAAATATTGCAA
AGATTGAACTTGGGAGATATGAGATAGATACATGGTATTTCTCTCCTTTTCCACCAGAGT
ACAATGACTGCCCGAAGCTGTTTTTCTGTGAATTTTGCCTCAACTTCATGAAGCGCAAAG
AACAGCTTCAGAGGCACATGAAGAAGTGCGATCTTAAGCACCCTCCAGGTGATGAAATCT
ATAGAAGTGGAACTCTTTCGATGTTCGAGGTTGATGGGAAGAAGAACAAGGTTTATGGAC
AGAATCTTTGTTATCTGGCCAAGCTATTTCTTGATCACAAGACATTGTACTATGATGTTG
ATTTATTCTTGTTTTATGTTCTCTGCGAATGTGATGACCGGGGATGTCATATGGTGGGAT
ATTTCTCTAAGGAAAAACACTCTGAAGAATCTTATAATTTGGCTTGCATTCTCACTCTTC
CCCCATACCAAAGAAAAGGATATGGGAAGTTCCTGATTGCTTTCTCATATGAACTTTCCA
AGAAGGAAGGTAAAGTTGGGACACCGGAGCGCCCTCTTTCTGATCTTGGCCTGCTCAGCT
ATAGAGGTTATTGGACTAGAGTGCTTCTGGAAATTCTAAAGAAACATAAGGGTAACATAT
CTATAAAGGTAACACCCTTCTATCTAGATATACTTTTTTTGGTGTACAAATTTCAAAAGC
TGATTAAGGTATGATACAACAGTTCTAGAAAGAAAGTTTCTCTTGGCCATAATTCCTTGA
TCTACCCTACCTAACCTTTGGTCTATGACAAAAAGACTTACCTCTGTGTTTCATAGATAA
CACTTTCAACAAGCTGGTCGATTTTTCTCTGCTGCAATTATGTGTTAGTCAAGCATCCCC
TAAATAAGGACGTTTAGTAGTATTCTAGAACTTAGTGTATGCTATAAGGGTCTTTTTGGA
TGAGAAAGATCACGTCAGGAATGTTTGGGTTTTTTACAGTTCCAAGATTCTCTTTCCAAA
CATATCTTAAAATGCCAGGTTGCCAATGGAGTCATCTGTGCGTTCCTCCATATGGTTATC
TTGTATAAAAACTGGCTTTTCACCTTATCCATCCTGCACGTCTTGCCTGGGCCCTGAAAC
TTTTGGGTGCATGTGAAGCGACTAACTTGGTAGTACATATCATCATCTGGATTTTTCTGG
ATACTTATGGGTTTGTAGTTGTCAGCACAGTGTACTGTGTCGCTGCCATAGCGCAATTCA
GGGAGGCAGTACATACGGGCGGTAGATTACCTGGCTTTAGCTCTTCAATCAGTAGATTTT
TTACAAAAAAAAGCTAGATGGAGCAGTTAGTCAATGTTTTTTGTTCGACTCCTAGGAGAA
TCATGTTTGTTACTAAAACCATTATAACATCATTGGAGAGTCGAAACTTGTGAATAGTAT
CATGTATCATAGGCAGCTGTAACTTTTTTAACATCAGATGTGCAAGGTTTGCAGCGAACA
ATATGCTAGATTCAGATTCTTCAAGCCGAGTAAAAAGAAGTGTGCTAAATAGCTTTAATT
CTATAACTGTAATACCCAGTGTATGTTGGCAGAGCCACGTGCACCCAGTGAAATATGCAG
AAACGTCCGCCATGTAAGGACATTTGATCCATGTGCTCTCTGGGTCTTCTGGCTGTGCCT
TTCTGTCCTTGTTGCTGCAGCTCTTGAAAGCATTTGGACATATGCAAAGCAGATCATCTG
ATGAGAGTACATGGAACACTTGTATTCTGAACGTCAATTGTTGTTGCCTTCTTGTCCCTG
ACCTGTACCACAGTGTTTGTTGGAGGAGTGCACATGGTCGTAGTTCACTTTTCTTTTTCA
TGAAGGCGTATACATAATTATAGCGTGCTTCTCGAACAAGGATAAGTGTGTCTGTATCAA
GGAGTAATCATCAGTTTGAACCAGATGGTTTGTACATGCATTGCCAACTGTTTGTAACAA
GCTTCTTGTACTTGCACGCAGGAACTCAGCGACATGACGGCAATAAAAGCCGATGACATC
TTGAGCACGCTGCAGAGCCTGGACCTAATCCAGTATCGCAAAGGGCAGCACGTCATCTGC
GCGGACCCGAAGGTCCTCGACCGCCACCTGAAGGCGGCGGGTCGGGGAGGCCTGGACGTG
GACGTTAGCAAGCTGATCTGGACTCCCTACAAGGAGCAAGGCTAAAAGCGCAGCTGCTCC
CAGCCCCAGATTAGAGTCCCTGTACATAACGTTTGGTACTAGGATCTCCCCTCAGCTCTC
ACTTCACTCGTGTACCGTGAAAACTGTACACTGTAACAACCACATTGCTGTGT