Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d022193_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:7:172484959:172489194:-1 gene:Zm00001d022193 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ramosa3 description:Probable trehalose-phosphate phosphatase J
Sequence	ATGACGAAGCACGCCGCCTACTCCAGCGAGGACGTGGTCGCGGCCGTGGCGGCGCCGGCG CCGGCCGGCCGGCATTTCACGTCGTTCCAGGCGCTGAAGGGCGCGCCCCTCGACTGCAAG AAGCACGCCGCCGTGGACCTGTCCGCGTCCGGGGCGGCCGTCGTGGGCGGCGGCCCCTGG TTTGAGTCCATGAAGGCTTCGTCGCCGCGGCGCGCCGCCGACGCCGAGCACGGCGACTGG ATGGAGAAGCACCCGTCCGCATTGGCCCAGTTCGAGCCGCTGCTTGCCGCCGCCAAGGGG AAGCAGATCGTGATGTTCCTGGACTACGACGGCACCCTGTCACCGATCGTCGAGGACCCC GACCGCGCCGTCATGTCGGAGGAGATGAGAGAAGCCGTGCGGCGCGTCGCCGAGCACTTC CCCACCGCGATTGTGAGCGGAAGATGCAGGGACAAGGTGCTCAACTTCGTGAAGCTGACG GAGCTGTACTACGCCGGGAGCCATGGCATGGACATCCAGGGCCCCGCCGCCTGCAGGCAG CCCAACCACGTCCAGCAGGCAAATGCTGAAGCCGCAGCTGTCCATTACCAAGCTGCGAGT GAGTTCCTGCCGGTCATCGAAGAGGTGTTCCGCACGCTGACGGCCAAGATGGAGTCCATC GCCGGCGCCAGGGTGGAGCACAACAAGTACTGCCTGTCCGTCCACTTCCGCTGCGTCCGG GAGGAGGAATGGAATGCCGTGAACGAGGAGGTCAGGTCGGTGCTCAGGGAGTACCCGAAC CTCAAGCTCACTCACGGCAGAAAGGTGCTGGAGATTCGTCCGTCCATCAAGTGGGACAAG GGCAAGGCCCTCGAGTTCTTGCTCAAGTCTCTTGGCTATGCTGGGCGCAACGACGTCTTC CCGATTTACATCGGAGATGATCGCACTGACGAGGACGCTTTCAAGGTGCTCCGCAACATG GGGCAGGGCATCGGAATCCTGGTGTCCAAGCTTCCTAAGGAGACGGCGGCATCCTACTCG CTGAGTGACCCTGCCGAGGTCAAGGAGTTCCTCCGCAAGCTGGCCAATAAGAAGGGGGCG CGCCAACCATGA

Peptide Sequence

PEP ID	Zm00001d022193_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:7:172484959:172489194:-1 gene:Zm00001d022193 transcript:Zm00001d022193_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ramosa3 description:Probable trehalose-phosphate phosphatase J
Sequence	MTKHAAYSSEDVVAAVAAPAPAGRHFTSFQALKGAPLDCKKHAAVDLSASGAAVVGGGPW FESMKASSPRRAADAEHGDWMEKHPSALAQFEPLLAAAKGKQIVMFLDYDGTLSPIVEDP DRAVMSEEMREAVRRVAEHFPTAIVSGRCRDKVLNFVKLTELYYAGSHGMDIQGPAACRQ PNHVQQANAEAAAVHYQAASEFLPVIEEVFRTLTAKMESIAGARVEHNKYCLSVHFRCVR EEEWNAVNEEVRSVLREYPNLKLTHGRKVLEIRPSIKWDKGKALEFLLKSLGYAGRNDVF PIYIGDDRTDEDAFKVLRNMGQGIGILVSKLPKETAASYSLSDPAEVKEFLRKLANKKGA RQP

Transcript Sequence

Transcript ID	Zm00001d022193_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:7:172484959:172489194:-1 gene:Zm00001d022193 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ramosa3 description:Probable trehalose-phosphate phosphatase J
Sequence	ACACCACCAGTCCATCCATCCTGCGCTGCGCTGCGCTCGTGACAAGCATCGCAAGCAGCT CCTCCTCCTCCCCCTGTAGCCAACACCTTCCTGTTCCGGGCGCAGTAGCGGCTGTCGGCC CTCGATCTGACGAGCCATGACGAAGCACGCCGCCTACTCCAGCGAGGACGTGGTCGCGGC CGTGGCGGCGCCGGCGCCGGCCGGCCGGCATTTCACGTCGTTCCAGGCGCTGAAGGGCGC GCCCCTCGACTGCAAGAAGCACGCCGCCGTGGACCTGTCCGCGTCCGGGGCGGCCGTCGT GGGCGGCGGCCCCTGGTTTGAGTCCATGAAGGCTTCGTCGCCGCGGCGCGCCGCCGACGC CGAGCACGGCGACTGGATGGAGAAGCACCCGTCCGCATTGGCCCAGTTCGAGCCGCTGCT TGCCGCCGCCAAGGGGAAGCAGATCGTGATGTTCCTGGACTACGACGGCACCCTGTCACC GATCGTCGAGGACCCCGACCGCGCCGTCATGTCGGAGGAGATGAGAGAAGCCGTGCGGCG CGTCGCCGAGCACTTCCCCACCGCGATTGTGAGCGGAAGATGCAGGGACAAGGTGCTCAA CTTCGTGAAGCTGACGGAGCTGTACTACGCCGGGAGCCATGGCATGGACATCCAGGGCCC CGCCGCCTGCAGGCAGCCCAACCACGTCCAGCAGGCAAATGCTGAAGCCGCAGCTGTCCA TTACCAAGCTGCGAGTGAGTTCCTGCCGGTCATCGAAGAGGTGTTCCGCACGCTGACGGC CAAGATGGAGTCCATCGCCGGCGCCAGGGTGGAGCACAACAAGTACTGCCTGTCCGTCCA CTTCCGCTGCGTCCGGGAGGAGGAATGGAATGCCGTGAACGAGGAGGTCAGGTCGGTGCT CAGGGAGTACCCGAACCTCAAGCTCACTCACGGCAGAAAGGTGCTGGAGATTCGTCCGTC CATCAAGTGGGACAAGGGCAAGGCCCTCGAGTTCTTGCTCAAGTCTCTTGGCTATGCTGG GCGCAACGACGTCTTCCCGATTTACATCGGAGATGATCGCACTGACGAGGACGCTTTCAA GGTGCTCCGCAACATGGGGCAGGGCATCGGAATCCTGGTGTCCAAGCTTCCTAAGGAGAC GGCGGCATCCTACTCGCTGAGTGACCCTGCCGAGGTCAAGGAGTTCCTCCGCAAGCTGGC CAATAAGAAGGGGGCGCGCCAACCATGAAAATGAAGACGACCTCGTGCATGCATGTAGCT AAGCTAGGCATGGCGTGGACGATGGATGGATGGACGAGCACAACAGCAAAGAGGCGCTTA TTAGCTACAACTACTGGCCTTTTTTGTTGTTTTCTTTTTGCTCCTACCTATGCATAGATA GTAGTCTCTACTCTCTACTCTCTACCTAGCAACAACAACAACCTAGCTGATGCGCGCATG CATGCATGCATTGGTCGTCGCTTACTACATGCATGGCCATTCAGTGCAGTGCGTGTGTGC GATGGCGGAGAAACAACCTAGCTAGCTAGCTGCTCGATCGATCGATCGGCCTTGTCTTGG AAGAAGGCGGCAGGGAGGGGGTCCCTGTGTAACTGCTGGGGATCCGATATATCGATCTGT CCTTCCGGCCGGCAAGATCTTGTAATTAGCCGCTGTGGTACTAGCTAGCAGCTAGAGAGA AATGGATAACAAAACAAATAACATGCGTCGTCGTCTTCGTC