Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d022185_T012
CDS Infomation

cds chromosome:B73_RefGen_v4:7:172183393:172189760:-1 gene:Zm00001d022185 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calmodulin-binding transcription activator 2
Sequence

ATGAATATTGTTCTTGTTCACTACCTTGAAATCAAGGGTGCCAAACAAAGTTTCAATCAT
GCTAAAGAAGCTGAAGAGACTGCAGGATTATCTAATGCCGATAGTCCTGCATGCTCAAAC
TCTTTCGCTAGTCAGAGCCAGGTAGCCTCCCGATCTATGGATGCTGAAAGCCCAATTAGT
GGACAGATTTCGGAATATGAAGATGCTGAAACAGATAATTCTCGAGCAAGCTCCAGATAC
CACCCTTTCACTGAGATGCAGCAGCCTGTGGATGGTACCGTGATGGGTAACTTCTTTGGC
GCTTCATCTCCAAGTGTTTCTGTAAATAATCTAGCTGCAGGTTATCTTGGTGAAATGCAA
CCTACGGGAGCTAATTTTACCAGTCATTTTGCCACTCGCAATGACATAGCTAGTGTGTTC
AATGATACTGGCTCTGAGTTAGGAGGTGGTCCCAAAACTTCAATTGATTCAGTACTGTTG
GGTGAACCATTTCCAGAATATCCAGGCGGCTTCATGGAGTCGACACTCTATTCTTCTGTT
GCAACATTGGGTAACAGTCTGGAAGATGGTTTGCAGACATTTATGTCTGAGGCTCTCTAC
ACCAACAATCTCACTCAAAAGGAAGTTGATGCACTTGGTGCAGCAGGCATAACATCCTCG
AAGACAGAGAATGATGGTTATACAGATCAAAGTGTCAGGTATCCACTTTTAAAGCAGTCA
TCATCAGACCTCTTTAAGATGGAGCCAGATGGTTTGAAAAAATTCGACAGCTTTTCAAGG
TGGATGAGCAATGAGCTTCCAGAGGTTGTTGATTTGGATATCAAGTCCAGCTCTGATGCT
TTCTGGAGTACTACTGAAACCGTGAATGTTGCTGATGGATCTAGTATACCTATTAATGAG
CCATTGGATGTATTTGTAGTCAGCCCCTCACTTTCCCAAGACCAGCTCTTCAGTATTATT
GATGTATCTCCAAGCTGGGCATACAATGGCACAAAAACCAAGGTCTTAATTACTGGTACA
TTCTTGGCAAAAAAAGAAGATGTGGAAAATTGCAGCTGGTCTTGTATGTTTGGAGACTCT
GAAGTCTCTGCTGAAGTTTTAGTGGATGGCTCCCTGCGTTGCTATACACCAGTACACCAT
TCTGGACGAGTCCCATTTTATGTGACATGTTCAAATAGAGTAGCTTGTAGTGAAGTGCGA
GAATTTGAGTTCCGTGATTCTGAGACCCATTATATGGATATCTCAGATAAGCATACTACA
GGCATAAATGAAATGCATTTACGTATCCGCCTTGATAAGTTACTTTCCCTGGAACCAGAA
GACTATGAAAAGTATGTCTTGAGTAATGGAAATAAGTCTGAGCTGATCAACACTATCAGT
TCATTAATGCTTGACAATAATTTGTCTAATCTGGCATTACCATCTGATGAGAAGGAATTG
TGCACTGTACAGGATCAGAATCTTGAGAAACAGGTGAAAGAAAAGCTATATTACTGGCTT
ATCCATAAGATACATGATGATGGAAAAGGTCCAAATGTCCTAGGCAAGGAAGGACAAGGT
GCCATTCATTTAGTAGCCGCACTTGGTTATGATTGGGCTATCAAACCAATAGTTGCGGCA
GGAGTAAATATAAACTTCAGGGATATTCGTGGATGGACTGCGCTTCACTGGGCTGCATGT
TGTGGAAGGGAGCGGACAGTTGGTGCCCTGATAGCAAGCGGAGCTGCATCTGGTGCTTTA
ACAGATCCAACGCAGCAGTATCCATCTGGAAGAACTCCTGCTGATTTAGCATCAGAAAAT
GGTCACAAAGGCATTGCTGGTTTTCTTGCAGAGTCTGCTTTGACAAGTCACCTCTCAGCT
CTTACATTAAAAGAGTCGCCAAGTGGCAATGTGGAAGAAATATGTGGATTAACAGCAGCT
GAAGGTTTTGCAGCATCAAGTTCTTCCCAGCTTGCTTGTGTTAATTCTCAGGAAGAGTCC
TTAAAAGATTCACTTGGTGCAGTTCGTAAATCAACTCAAGCAGCAGCCAGAATATTTCAA
GCTTTTAGGGTGGAATCATTCCACAGAAAGAAGGTTATTGAATATGGAGATGATGATTGT
GGATTGTCTGATGAACGCACACTTTCACTTGTTTCCCTTAGAAACCCGAAATCTGGACAC
GGTGATTCACATTCTGCTGCTGTTCGTATTCAAAACAAGTTCAGAGGATGGAAAGGAAGA
AAAGAGTTTATGCTTATCCGGCAGAAAATTGTGAAGATACAGGCCCATGTACGTGGACAT
CAGGTAAGGAAAAACTATCGGAAGGTAGTCTGGTCTGTTGGCATCGTGGAGAAAGTCATA
CTGAGGTGGAGGAGAAAGGGAAGGGGTCTGCGAGGTTTCCAACCTGAGAAACAACTTGAA
GGTCCATCATGGCAGATCCAACCTGCAAAGGCTGAGGCTGAGGATGAATATGACTTCTTG
AAGGATGGCAGGAAACAGGCTACAGGCAGGTTGGATAGAGCACTGGCTCGTGTGCGTTCC
ATGAATCAGTATCCTGAAGCAAGAGACCAGTACCGCAGGCTGCAAGCCTGTGTTAACAGC
CTACGAGAGTCCCAGGCGATGCAGGACAGGATGCTGGCTGATTCAGCTGGCACCGATGGG
GGTGATTTCATGACTGAATTGGAGGAGCTATGCCGGGATGATGGCGATGCCCCGATG

Peptide Sequence

PEP ID

Zm00001d022185_P012
PEP Infomation

pep chromosome:B73_RefGen_v4:7:172183393:172189760:-1 gene:Zm00001d022185 transcript:Zm00001d022185_T012 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calmodulin-binding transcription activator 2
Sequence

MNIVLVHYLEIKGAKQSFNHAKEAEETAGLSNADSPACSNSFASQSQVASRSMDAESPIS
GQISEYEDAETDNSRASSRYHPFTEMQQPVDGTVMGNFFGASSPSVSVNNLAAGYLGEMQ
PTGANFTSHFATRNDIASVFNDTGSELGGGPKTSIDSVLLGEPFPEYPGGFMESTLYSSV
ATLGNSLEDGLQTFMSEALYTNNLTQKEVDALGAAGITSSKTENDGYTDQSVRYPLLKQS
SSDLFKMEPDGLKKFDSFSRWMSNELPEVVDLDIKSSSDAFWSTTETVNVADGSSIPINE
PLDVFVVSPSLSQDQLFSIIDVSPSWAYNGTKTKVLITGTFLAKKEDVENCSWSCMFGDS
EVSAEVLVDGSLRCYTPVHHSGRVPFYVTCSNRVACSEVREFEFRDSETHYMDISDKHTT
GINEMHLRIRLDKLLSLEPEDYEKYVLSNGNKSELINTISSLMLDNNLSNLALPSDEKEL
CTVQDQNLEKQVKEKLYYWLIHKIHDDGKGPNVLGKEGQGAIHLVAALGYDWAIKPIVAA
GVNINFRDIRGWTALHWAACCGRERTVGALIASGAASGALTDPTQQYPSGRTPADLASEN
GHKGIAGFLAESALTSHLSALTLKESPSGNVEEICGLTAAEGFAASSSSQLACVNSQEES
LKDSLGAVRKSTQAAARIFQAFRVESFHRKKVIEYGDDDCGLSDERTLSLVSLRNPKSGH
GDSHSAAVRIQNKFRGWKGRKEFMLIRQKIVKIQAHVRGHQVRKNYRKVVWSVGIVEKVI
LRWRRKGRGLRGFQPEKQLEGPSWQIQPAKAEAEDEYDFLKDGRKQATGRLDRALARVRS
MNQYPEARDQYRRLQACVNSLRESQAMQDRMLADSAGTDGGDFMTELEELCRDDGDAPM

Transcript Sequence

Transcript ID

Zm00001d022185_T012
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:172183393:172189760:-1 gene:Zm00001d022185 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calmodulin-binding transcription activator 2
Sequence

CAGATATTCCTCAGATACTACTGGAAGCTCAGAGTAGGTGGCTGCGGCCCACTGAAATCT
GCCAAATATTGTCAAACTACAAGAAGTTTTCCATTGCGCCAGAGCCACCAAACAGACCTC
AAAGTGGTTCGCTGTTTCTGTTTGACCGGAAAATATTGAGATACTTCCGGAAGGATGGAC
ACAACTGGAGAAAGAAAAAGGACGGAAAGACAGTTAAAGAAGCACATGAGAAGCTCAAAG
TTGGCAGTGTTGATGTACTTCATTGCTATTATGCCCATGGTGAAGAGAATGAGAACTTCC
AAAGACGAACATATTGGCTGCTTGAAGAGGGTTTCATGAATATTGTTCTTGTTCACTACC
TTGAAATCAAGGGTGCCAAACAAAGTTTCAATCATGCTAAAGAAGCTGAAGAGACTGCAG
GATTATCTAATGCCGATAGTCCTGCATGCTCAAACTCTTTCGCTAGTCAGAGCCAGGTAG
CCTCCCGATCTATGGATGCTGAAAGCCCAATTAGTGGACAGATTTCGGAATATGAAGATG
CTGAAACAGATAATTCTCGAGCAAGCTCCAGATACCACCCTTTCACTGAGATGCAGCAGC
CTGTGGATGGTACCGTGATGGGTAACTTCTTTGGCGCTTCATCTCCAAGTGTTTCTGTAA
ATAATCTAGCTGCAGGTTATCTTGGTGAAATGCAACCTACGGGAGCTAATTTTACCAGTC
ATTTTGCCACTCGCAATGACATAGCTAGTGTGTTCAATGATACTGGCTCTGAGTTAGGAG
GTGGTCCCAAAACTTCAATTGATTCAGTACTGTTGGGTGAACCATTTCCAGAATATCCAG
GCGGCTTCATGGAGTCGACACTCTATTCTTCTGTTGCAACATTGGGTAACAGTCTGGAAG
ATGGTTTGCAGACATTTATGTCTGAGGCTCTCTACACCAACAATCTCACTCAAAAGGAAG
TTGATGCACTTGGTGCAGCAGGCATAACATCCTCGAAGACAGAGAATGATGGTTATACAG
ATCAAAGTGTCAGGTATCCACTTTTAAAGCAGTCATCATCAGACCTCTTTAAGATGGAGC
CAGATGGTTTGAAAAAATTCGACAGCTTTTCAAGGTGGATGAGCAATGAGCTTCCAGAGG
TTGTTGATTTGGATATCAAGTCCAGCTCTGATGCTTTCTGGAGTACTACTGAAACCGTGA
ATGTTGCTGATGGATCTAGTATACCTATTAATGAGCCATTGGATGTATTTGTAGTCAGCC
CCTCACTTTCCCAAGACCAGCTCTTCAGTATTATTGATGTATCTCCAAGCTGGGCATACA
ATGGCACAAAAACCAAGGTCTTAATTACTGGTACATTCTTGGCAAAAAAAGAAGATGTGG
AAAATTGCAGCTGGTCTTGTATGTTTGGAGACTCTGAAGTCTCTGCTGAAGTTTTAGTGG
ATGGCTCCCTGCGTTGCTATACACCAGTACACCATTCTGGACGAGTCCCATTTTATGTGA
CATGTTCAAATAGAGTAGCTTGTAGTGAAGTGCGAGAATTTGAGTTCCGTGATTCTGAGA
CCCATTATATGGATATCTCAGATAAGCATACTACAGGCATAAATGAAATGCATTTACGTA
TCCGCCTTGATAAGTTACTTTCCCTGGAACCAGAAGACTATGAAAAGTATGTCTTGAGTA
ATGGAAATAAGTCTGAGCTGATCAACACTATCAGTTCATTAATGCTTGACAATAATTTGT
CTAATCTGGCATTACCATCTGATGAGAAGGAATTGTGCACTGTACAGGATCAGAATCTTG
AGAAACAGGTGAAAGAAAAGCTATATTACTGGCTTATCCATAAGATACATGATGATGGAA
AAGGTCCAAATGTCCTAGGCAAGGAAGGACAAGGTGCCATTCATTTAGTAGCCGCACTTG
GTTATGATTGGGCTATCAAACCAATAGTTGCGGCAGGAGTAAATATAAACTTCAGGGATA
TTCGTGGATGGACTGCGCTTCACTGGGCTGCATGTTGTGGAAGGGAGCGGACAGTTGGTG
CCCTGATAGCAAGCGGAGCTGCATCTGGTGCTTTAACAGATCCAACGCAGCAGTATCCAT
CTGGAAGAACTCCTGCTGATTTAGCATCAGAAAATGGTCACAAAGGCATTGCTGGTTTTC
TTGCAGAGTCTGCTTTGACAAGTCACCTCTCAGCTCTTACATTAAAAGAGTCGCCAAGTG
GCAATGTGGAAGAAATATGTGGATTAACAGCAGCTGAAGGTTTTGCAGCATCAAGTTCTT
CCCAGCTTGCTTGTGTTAATTCTCAGGAAGAGTCCTTAAAAGATTCACTTGGTGCAGTTC
GTAAATCAACTCAAGCAGCAGCCAGAATATTTCAAGCTTTTAGGGTGGAATCATTCCACA
GAAAGAAGGTTATTGAATATGGAGATGATGATTGTGGATTGTCTGATGAACGCACACTTT
CACTTGTTTCCCTTAGAAACCCGAAATCTGGACACGGTGATTCACATTCTGCTGCTGTTC
GTATTCAAAACAAGTTCAGAGGATGGAAAGGAAGAAAAGAGTTTATGCTTATCCGGCAGA
AAATTGTGAAGATACAGGCCCATGTACGTGGACATCAGGTAAGGAAAAACTATCGGAAGG
TAGTCTGGTCTGTTGGCATCGTGGAGAAAGTCATACTGAGGTGGAGGAGAAAGGGAAGGG
GTCTGCGAGGTTTCCAACCTGAGAAACAACTTGAAGGTCCATCATGGCAGATCCAACCTG
CAAAGGCTGAGGCTGAGGATGAATATGACTTCTTGAAGGATGGCAGGAAACAGGCTACAG
GCAGGTTGGATAGAGCACTGGCTCGTGTGCGTTCCATGAATCAGTATCCTGAAGCAAGAG
ACCAGTACCGCAGGCTGCAAGCCTGTGTTAACAGCCTACGAGAGTCCCAGGCGATGCAGG
ACAGGATGCTGGCTGATTCAGCTGGCACCGATGGGGGTGATTTCATGACTGAATTGGAGG
AGCTATGCCGGGATGATGGCGATGCCCCGATGTC