Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d022161_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:7:171452423:171456738:1 gene:Zm00001d022161 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative paramyosin

Sequence

ATGGAATCGAGTTATGCCACCGAAGAGAGTAACTCTAAAGGCTCTTCTGCAAATGCATCT
TCATCTCCAACAGGAAGTTCAGAAACTTCTGTGGATTTACAAACTCCTCCTGCAGCCAAG
GAAATTCCTGGACGTATTGATCATGAGGGACCAAGCTGGCATGAGGTCTTAGAAATGCGG
GTTCCTGATCTATCAGAAGACATTGCAGAATCACATGCGCCTTCGGATACAGATCCTGAC
ATACTGTCTAATTCAGGACCAACTGAGGCATACATAAGCTCAACAAATGATAAGGCAGAT
TATCCTTCTTCAGTAGGCACAAGCGAAGTGAACGGTGTGCCTGTAAATGTTTCGAACGGA
GCTGGAACTACGCTAAAGGATGAAATGAAACCTAAAGAAGATGATACGCACCATCAGATT
GATAGGGATACAAAGCTGAAAATGAAACAAGATTCAGCAACAACACCTGAAAGTCCGTAC
AGAGGCCTTATTGACACTGCTGCACCCTTTGAGTCTGTTAGAGAAGCTGTCACCAAGTTT
GGAGGAATTGTCGATTGGAAAGCTCACAAAGCTCAGATGATGGAGAGGCGCAAGCTCATA
CAAGTTGAATTAGAAAACATTCGAACAGAAATTCCACTTTGCAAGGAGGAACTAGAAGCC
GCTGAGATGACTAAATCTCAAGTTGTCGATGAGCTAGAGCACACCAAGAGACTTATTGAG
GAGCTGAAGCATCAACTGGAGAAAGTACAGGTTGAAGAAGCTCAGGCAAAGCAGGACTCT
GAGCTTGCACAACTCAGGGCACAAGAAATTGAGCACGGAGTAGCTGATGAAGCTAGTGCG
ATAGCCAGGACACAAATGGAAGTCGCCAAAGAAAGGCACGAAAAGGCTGTTGCTGAACTT
AAGTCAGTAAAAGAGGAGTTGGCGTCAGTACATGAACAGTATGCTGCCTTGGTAGATGAA
AGAGACACAGCAATCAAAAGAGCAGAAGAGGTCATATCTGCTGGGAAGGACATTGAGAAG
CGAGTGGAACAACTGACATTAGAACTGATTGCGTCTAAAGGGTCTCTTGAATTGGCCCAT
GCTGCGCATCATGAAGCAGAGGAACGTAGGATCGGTGCAGCATTGGCGAAAGAGCAGGAT
TGCAATGCTTGGGAGAGAGAGTTGCGTCAGGCACAAGAGGAGCTGGAACGATTAGACAGT
AAGCTTGCGTTCAGTAACGATATGCAGCACAATATTGATGCAAATTTGCACAAGTTGCTT
AGCCTCAATTCGGAGCTGTCTGCCTATGTGGCGAACAAACTGACTGAAGAAGCTGAAGGT
GTTTCCAAGGATCATGAGTCCGAAGATTCTAGACACATTAGCAACGCAGTTAAGGAAGCT
CTAGCATCGAAACAGAAAGAACTTCAGGAGCTCAAAGCCGACATTGAGAAGGCAAAGGCT
GAGGCCAACGTGCTAAGATTTGCTGCCATGACACTCAGATCAGAACTGGACAACGAGAAC
GCTTCACTTGTCGCGTTGCAGCAGGGAGAGGCTATGGCATCCGTTGCTGTTTCTTCACTA
GAAGCTGAGCTCAACCGGACGAAACAAGAGATAGAATCTGTCAGGTCCAAGGAGGCAGAG
GCCCAAGAAAAGATGGTGGAGCTTCCCATGGTTTTACAGCAAGCGACTCAGGAGGCCGAG
GACGCCAGGGTAGCAGCTCACGCGGCCCACGAGGAGCTGAGGAAGGCGAAGGAGGCATTC
GAGCAAACCAAGGCTGCCGCAGCTGCAGCAGAGACCAGGTTATCTGCTGTTGTGAAAGAA
ACAGAAGCATCCGTAGCATCAGAGAGGCTAGCACGCGAGGCGCTTCAAGCTTTGCAAGAA
AGCGAACAGGCAAGAGAAACTAAGGATTCTCAGCGAGGAGTGGTGCTTCCTATAAGCGAG
TACTACGAACTTAGCAAGAGGGCACATGAAGCCGAAGAACAGGCGAGCGAGAAGGTAGCA
GAAGCACTGGCACAGGTAGTGTCGGCAAAGGAATCAGAAGCAATGAGCCTGGAGAGCCTA
AAGGAAGCGTCCGATGAAATGGACGAGAAGAAGGAAGCTCTTGAGATCGCCTTGGAGAGA
GCCGGGAGGGCGAACGAAGGGAAGCTTGGCGCGGAGCAGGAGCTTAGGAAATGGAGAGCC
GACCACGAGCAGCGCCGCAGAGCTCACGAATCCGCGAAACGCGCGGTGAATCCTTTGAAC
GGTCCGTCTAGAGTATTTGTCGAACAGAAGAGTCCATACCACAAGGAGCAGGAATCCAAG
GTGCAGGCGTCGGGGAGTAGTAGCTACGAGGGCCTCGTTCCAAACCAAAAGATGCAGAGG
AAGAAATCGCTGTTCCCTCTGATGGGCTCGGTTCTATCCAGGAAGACCCGGGCACAGACG
TGA

Peptide Sequence

PEP ID

Zm00001d022161_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:7:171452423:171456738:1 gene:Zm00001d022161 transcript:Zm00001d022161_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative paramyosin

Sequence

MESSYATEESNSKGSSANASSSPTGSSETSVDLQTPPAAKEIPGRIDHEGPSWHEVLEMR
VPDLSEDIAESHAPSDTDPDILSNSGPTEAYISSTNDKADYPSSVGTSEVNGVPVNVSNG
AGTTLKDEMKPKEDDTHHQIDRDTKLKMKQDSATTPESPYRGLIDTAAPFESVREAVTKF
GGIVDWKAHKAQMMERRKLIQVELENIRTEIPLCKEELEAAEMTKSQVVDELEHTKRLIE
ELKHQLEKVQVEEAQAKQDSELAQLRAQEIEHGVADEASAIARTQMEVAKERHEKAVAEL
KSVKEELASVHEQYAALVDERDTAIKRAEEVISAGKDIEKRVEQLTLELIASKGSLELAH
AAHHEAEERRIGAALAKEQDCNAWERELRQAQEELERLDSKLAFSNDMQHNIDANLHKLL
SLNSELSAYVANKLTEEAEGVSKDHESEDSRHISNAVKEALASKQKELQELKADIEKAKA
EANVLRFAAMTLRSELDNENASLVALQQGEAMASVAVSSLEAELNRTKQEIESVRSKEAE
AQEKMVELPMVLQQATQEAEDARVAAHAAHEELRKAKEAFEQTKAAAAAAETRLSAVVKE
TEASVASERLAREALQALQESEQARETKDSQRGVVLPISEYYELSKRAHEAEEQASEKVA
EALAQVVSAKESEAMSLESLKEASDEMDEKKEALEIALERAGRANEGKLGAEQELRKWRA
DHEQRRRAHESAKRAVNPLNGPSRVFVEQKSPYHKEQESKVQASGSSSYEGLVPNQKMQR
KKSLFPLMGSVLSRKTRAQT

Transcript Sequence

Transcript ID

Zm00001d022161_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:171452423:171456738:1 gene:Zm00001d022161 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative paramyosin

Sequence

ATCGCCCAGCCAGCCTCTCAACCCTCGGCTCAGCCTCCCCTCAGAATAAACAGCGAAAAA
AAGGAAGGCGAAAAGAAAAAATCAATCGCGAGCGCTAAGAGCGGAGATCCAAATCGGCGC
AAAAGGAGGCGCTCGCTCGCTTCGCCCGCACGGAAGTTCCTCCGCGCCGTCGAGGAGCAA
ACCAATTGCGACTTGGAAAAGGCTAATAAGGAATGGAATCGAGTTATGCCACCGAAGAGA
GTAACTCTAAAGGCTCTTCTGCAAATGCATCTTCATCTCCAACAGGAAGTTCAGAAACTT
CTGTGGATTTACAAACTCCTCCTGCAGCCAAGGAAATTCCTGGACGTATTGATCATGAGG
GACCAAGCTGGCATGAGGTCTTAGAAATGCGGGTTCCTGATCTATCAGAAGACATTGCAG
AATCACATGCGCCTTCGGATACAGATCCTGACATACTGTCTAATTCAGGACCAACTGAGG
CATACATAAGCTCAACAAATGATAAGGCAGATTATCCTTCTTCAGTAGGCACAAGCGAAG
TGAACGGTGTGCCTGTAAATGTTTCGAACGGAGCTGGAACTACGCTAAAGGATGAAATGA
AACCTAAAGAAGATGATACGCACCATCAGATTGATAGGGATACAAAGCTGAAAATGAAAC
AAGATTCAGCAACAACACCTGAAAGTCCGTACAGAGGCCTTATTGACACTGCTGCACCCT
TTGAGTCTGTTAGAGAAGCTGTCACCAAGTTTGGAGGAATTGTCGATTGGAAAGCTCACA
AAGCTCAGATGATGGAGAGGCGCAAGCTCATACAAGTTGAATTAGAAAACATTCGAACAG
AAATTCCACTTTGCAAGGAGGAACTAGAAGCCGCTGAGATGACTAAATCTCAAGTTGTCG
ATGAGCTAGAGCACACCAAGAGACTTATTGAGGAGCTGAAGCATCAACTGGAGAAAGTAC
AGGTTGAAGAAGCTCAGGCAAAGCAGGACTCTGAGCTTGCACAACTCAGGGCACAAGAAA
TTGAGCACGGAGTAGCTGATGAAGCTAGTGCGATAGCCAGGACACAAATGGAAGTCGCCA
AAGAAAGGCACGAAAAGGCTGTTGCTGAACTTAAGTCAGTAAAAGAGGAGTTGGCGTCAG
TACATGAACAGTATGCTGCCTTGGTAGATGAAAGAGACACAGCAATCAAAAGAGCAGAAG
AGGTCATATCTGCTGGGAAGGACATTGAGAAGCGAGTGGAACAACTGACATTAGAACTGA
TTGCGTCTAAAGGGTCTCTTGAATTGGCCCATGCTGCGCATCATGAAGCAGAGGAACGTA
GGATCGGTGCAGCATTGGCGAAAGAGCAGGATTGCAATGCTTGGGAGAGAGAGTTGCGTC
AGGCACAAGAGGAGCTGGAACGATTAGACAGTAAGCTTGCGTTCAGTAACGATATGCAGC
ACAATATTGATGCAAATTTGCACAAGTTGCTTAGCCTCAATTCGGAGCTGTCTGCCTATG
TGGCGAACAAACTGACTGAAGAAGCTGAAGGTGTTTCCAAGGATCATGAGTCCGAAGATT
CTAGACACATTAGCAACGCAGTTAAGGAAGCTCTAGCATCGAAACAGAAAGAACTTCAGG
AGCTCAAAGCCGACATTGAGAAGGCAAAGGCTGAGGCCAACGTGCTAAGATTTGCTGCCA
TGACACTCAGATCAGAACTGGACAACGAGAACGCTTCACTTGTCGCGTTGCAGCAGGGAG
AGGCTATGGCATCCGTTGCTGTTTCTTCACTAGAAGCTGAGCTCAACCGGACGAAACAAG
AGATAGAATCTGTCAGGTCCAAGGAGGCAGAGGCCCAAGAAAAGATGGTGGAGCTTCCCA
TGGTTTTACAGCAAGCGACTCAGGAGGCCGAGGACGCCAGGGTAGCAGCTCACGCGGCCC
ACGAGGAGCTGAGGAAGGCGAAGGAGGCATTCGAGCAAACCAAGGCTGCCGCAGCTGCAG
CAGAGACCAGGTTATCTGCTGTTGTGAAAGAAACAGAAGCATCCGTAGCATCAGAGAGGC
TAGCACGCGAGGCGCTTCAAGCTTTGCAAGAAAGCGAACAGGCAAGAGAAACTAAGGATT
CTCAGCGAGGAGTGGTGCTTCCTATAAGCGAGTACTACGAACTTAGCAAGAGGGCACATG
AAGCCGAAGAACAGGCGAGCGAGAAGGTAGCAGAAGCACTGGCACAGGTAGTGTCGGCAA
AGGAATCAGAAGCAATGAGCCTGGAGAGCCTAAAGGAAGCGTCCGATGAAATGGACGAGA
AGAAGGAAGCTCTTGAGATCGCCTTGGAGAGAGCCGGGAGGGCGAACGAAGGGAAGCTTG
GCGCGGAGCAGGAGCTTAGGAAATGGAGAGCCGACCACGAGCAGCGCCGCAGAGCTCACG
AATCCGCGAAACGCGCGGTGAATCCTTTGAACGGTCCGTCTAGAGTATTTGTCGAACAGA
AGAGTCCATACCACAAGGAGCAGGAATCCAAGGTGCAGGCGTCGGGGAGTAGTAGCTACG
AGGGCCTCGTTCCAAACCAAAAGATGCAGAGGAAGAAATCGCTGTTCCCTCTGATGGGCT
CGGTTCTATCCAGGAAGACCCGGGCACAGACGTGACGTAAACGAGATCCTATAGGCACCT
GGGGCTTTGCCATTCACATTGCTGTACATTGGTGTAATAAGCTGGTTTTTTTTCTTGGTC
TTCTTTGGAAAGAGCCTTTTTGTTTTGTTTTAAAGGTTGGTATATCCTGTGGAAGGTGTA
ATTTAATTTGTCGGTATAAACAGCGTAGAACACATTGGAATACTTTTATATGATTTTTTT
TGGTAA