Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d022155_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:7:171391092:171396068:1 gene:Zm00001d022155 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat transmembrane protein kinase 1-like protein

Sequence

ATGGCTGGCGGGGTGGCCGTTGGGGTCGTGGCGCTGTTCTTGGCTGCAGCTTCATTTGGG
GCTAATGCCAACACCGACTCGAATGATGTGAATGCCCTCAATGTGTTCTACACAACCATG
AATTCGCCGCCGCAGCTGACGAACTGGGTGTCCCAAAATGGGGATCCCTGTGGGCAGTCG
TGGCTGGGGGTCACCTGCTCGGGTTCCAGAGTGACAGCAATAAAGTTATCTGGGATGAGG
CTTAACGGCACCTTGGGCTACAACATGAACCAGCTCACTGCACTAGTTCAGCTGGATATG
AGCAATAATAATCTTGGAGGCAGTGACATTCCTTATAATCTTCCTCCGAATCTCCAGAGC
TTAAATCTTGCAGTAAATAACTTCACTGGGACTGTACCTTACTCCATCTCCCAGATGGTT
GCACTTAGGGATTTAAATCTTGATCATAATCAGCTCTCGAACATCAACGATATGTTTAGT
CAGCTCACAAATTTAACAACGTTGGATCTATCATACAACACATTCTCTGGTGATATCCCA
CATAGCTTTAACTCCTTGACAAGTTTGAAAACACTTTACCTTCAGAACAACAAATTTAAC
GGCACAATAGATGTTCTCACTGATCTTCCTCTTACTGACTTAAATGTCGAAAACAACCAA
CTCACCGGTTGGATACCCGATAAACTAAAGGGAATCAATAATCTCCAGACAAGTGGAAAC
TCGTTTAACAATGGCCCTGCTCCACCACCTCCACCATCACCATTATCACCTCCATCGACA
AATACCCCTCCTCCCTCTCGGCAGCATGCTGTTCCAAGTAGCGCTGGTAAAAATACCCCA
TCTGAAAATGGTGGAAAACACTCGAAACTTGGTGGTGGTGCAGTAGCAGGAATCATAATA
TGTTTGCTGGTTGTTAGCGCAATAGTTGCATTCCTTGTGATCAAAAGGAAATCATGGAGG
TTATCACAGGGACAAGACCCTGAACAAAATGAACCTCTCAGCCCTTTTGCTTCAGGACTT
AAACAGATGAAATCGATCAAATCTATCAAAATCGTATCAACAATGGGAAAAGAAGAATTG
CAGAAGACTGTTTCGATGAGTTTGAAGCCTCCAACAAAAATTGACCTGCACAAGTCCTTT
GATGAAAATGATACCACTAACAAGGCCATCTCAAGGAATGTAAGCTTGTCTTCCATCACA
ATACCTGCATACACAGTGGCAGACCTTCAGATGGCAACGGGCAGCTTCAGTCCTGACAGT
TTTATCGGTGAGGGATCGGTAGGCCGTGTTTACAAAGCCAAATTCGGTGATCAGAAGGTC
ATGGCTGTAAAGAAAATAAACTTCTCTGTATTTCCAAGCCATCCTTCAGATTTGTTCATT
GAGTTGGTTGCAAACATTTCAATGTTAAATCATCCAAACCTTGCTGAGCTTGCTGGTTAC
TGTTCAGAGCATGGACAATGCTTGCTGGCATATGAATTCTACCGAAACGGTTCTCTTCAT
GATTTCCTTCATCTGAAAGATGAACACAGCAAGCCATTGTCTTGGAACAACCGTGTCAAG
ATTGCGCTTGGATCTGCAAGAGCATTAGAGTACCTACATGAGACTTGTTCACCCTCTGTG
GTCCACAAGAATTTCAAGTCATCCAACATTTTATTGGATGGTGAGCTGACCCCCCACCTC
TCTGATTCTGGGTTTGCAGGCCTTCTTGCAAACCAGGAATTCCAGGAATCGGATGAGAAC
TCAGGATACAGGGCACCTGAGGTGATCTTGGCTGGTCAGTACTCCCTGAAGAGCGACGTG
TACAGCTTCGGAGTCGTCATGCTAGAGCTTCTGACTGGCCGGAAACCGTTTGACAGGACC
CGACCGCGGCCTGAGCAGTCACTGGTCCGATGGGCTACTCCGCAGCTGCACGACATCGAC
GCGCTGGACCAGATGGTCGACCCCGCGCTGCAAGGGCTGTACCCGTCCAAATCCCTCTCC
CGCTTCGCCGATGCCATCGCCCTTTGTGTTCAGCCTGAGCCGGAGTTTCGGCCGCCGATG
TCGGAGGTCGTGCAGTCGCTGGTGCGCCTGGTGCAGAGGGCGAACATGACGAGGATGCAC
GAGAGCCAGTCGCGGCGCCACGGCGAATCCGGCGGGGACTACGAGTTTTGA

Peptide Sequence

PEP ID

Zm00001d022155_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:7:171391092:171396068:1 gene:Zm00001d022155 transcript:Zm00001d022155_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat transmembrane protein kinase 1-like protein

Sequence

MAGGVAVGVVALFLAAASFGANANTDSNDVNALNVFYTTMNSPPQLTNWVSQNGDPCGQS
WLGVTCSGSRVTAIKLSGMRLNGTLGYNMNQLTALVQLDMSNNNLGGSDIPYNLPPNLQS
LNLAVNNFTGTVPYSISQMVALRDLNLDHNQLSNINDMFSQLTNLTTLDLSYNTFSGDIP
HSFNSLTSLKTLYLQNNKFNGTIDVLTDLPLTDLNVENNQLTGWIPDKLKGINNLQTSGN
SFNNGPAPPPPPSPLSPPSTNTPPPSRQHAVPSSAGKNTPSENGGKHSKLGGGAVAGIII
CLLVVSAIVAFLVIKRKSWRLSQGQDPEQNEPLSPFASGLKQMKSIKSIKIVSTMGKEEL
QKTVSMSLKPPTKIDLHKSFDENDTTNKAISRNVSLSSITIPAYTVADLQMATGSFSPDS
FIGEGSVGRVYKAKFGDQKVMAVKKINFSVFPSHPSDLFIELVANISMLNHPNLAELAGY
CSEHGQCLLAYEFYRNGSLHDFLHLKDEHSKPLSWNNRVKIALGSARALEYLHETCSPSV
VHKNFKSSNILLDGELTPHLSDSGFAGLLANQEFQESDENSGYRAPEVILAGQYSLKSDV
YSFGVVMLELLTGRKPFDRTRPRPEQSLVRWATPQLHDIDALDQMVDPALQGLYPSKSLS
RFADAIALCVQPEPEFRPPMSEVVQSLVRLVQRANMTRMHESQSRRHGESGGDYEF

Transcript Sequence

Transcript ID

Zm00001d022155_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:171391092:171396068:1 gene:Zm00001d022155 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat transmembrane protein kinase 1-like protein

Sequence

AGACGAATGGTGCAGCGGTGAAGGCAGGAGGAGGAGGAGGACATAGGAGGGGATAGGAGC
CGCCGCAGACATGGCTGGCGGGGTGGCCGTTGGGGTCGTGGCGCTGTTCTTGGCTGCAGC
TTCATTTGGGGCTAATGCCAACACCGACTCGAATGATGTGAATGCCCTCAATGTGTTCTA
CACAACCATGAATTCGCCGCCGCAGCTGACGAACTGGGTGTCCCAAAATGGGGATCCCTG
TGGGCAGTCGTGGCTGGGGGTCACCTGCTCGGGTTCCAGAGTGACAGCAATAAAGTTATC
TGGGATGAGGCTTAACGGCACCTTGGGCTACAACATGAACCAGCTCACTGCACTAGTTCA
GCTGGATATGAGCAATAATAATCTTGGAGGCAGTGACATTCCTTATAATCTTCCTCCGAA
TCTCCAGAGCTTAAATCTTGCAGTAAATAACTTCACTGGGACTGTACCTTACTCCATCTC
CCAGATGGTTGCACTTAGGGATTTAAATCTTGATCATAATCAGCTCTCGAACATCAACGA
TATGTTTAGTCAGCTCACAAATTTAACAACGTTGGATCTATCATACAACACATTCTCTGG
TGATATCCCACATAGCTTTAACTCCTTGACAAGTTTGAAAACACTTTACCTTCAGAACAA
CAAATTTAACGGCACAATAGATGTTCTCACTGATCTTCCTCTTACTGACTTAAATGTCGA
AAACAACCAACTCACCGGTTGGATACCCGATAAACTAAAGGGAATCAATAATCTCCAGAC
AAGTGGAAACTCGTTTAACAATGGCCCTGCTCCACCACCTCCACCATCACCATTATCACC
TCCATCGACAAATACCCCTCCTCCCTCTCGGCAGCATGCTGTTCCAAGTAGCGCTGGTAA
AAATACCCCATCTGAAAATGGTGGAAAACACTCGAAACTTGGTGGTGGTGCAGTAGCAGG
AATCATAATATGTTTGCTGGTTGTTAGCGCAATAGTTGCATTCCTTGTGATCAAAAGGAA
ATCATGGAGGTTATCACAGGGACAAGACCCTGAACAAAATGAACCTCTCAGCCCTTTTGC
TTCAGGACTTAAACAGATGAAATCGATCAAATCTATCAAAATCGTATCAACAATGGGAAA
AGAAGAATTGCAGAAGACTGTTTCGATGAGTTTGAAGCCTCCAACAAAAATTGACCTGCA
CAAGTCCTTTGATGAAAATGATACCACTAACAAGGCCATCTCAAGGAATGTAAGCTTGTC
TTCCATCACAATACCTGCATACACAGTGGCAGACCTTCAGATGGCAACGGGCAGCTTCAG
TCCTGACAGTTTTATCGGTGAGGGATCGGTAGGCCGTGTTTACAAAGCCAAATTCGGTGA
TCAGAAGGTCATGGCTGTAAAGAAAATAAACTTCTCTGTATTTCCAAGCCATCCTTCAGA
TTTGTTCATTGAGTTGGTTGCAAACATTTCAATGTTAAATCATCCAAACCTTGCTGAGCT
TGCTGGTTACTGTTCAGAGCATGGACAATGCTTGCTGGCATATGAATTCTACCGAAACGG
TTCTCTTCATGATTTCCTTCATCTGAAAGATGAACACAGCAAGCCATTGTCTTGGAACAA
CCGTGTCAAGATTGCGCTTGGATCTGCAAGAGCATTAGAGTACCTACATGAGACTTGTTC
ACCCTCTGTGGTCCACAAGAATTTCAAGTCATCCAACATTTTATTGGATGGTGAGCTGAC
CCCCCACCTCTCTGATTCTGGGTTTGCAGGCCTTCTTGCAAACCAGGAATTCCAGGAATC
GGATGAGAACTCAGGATACAGGGCACCTGAGGTGATCTTGGCTGGTCAGTACTCCCTGAA
GAGCGACGTGTACAGCTTCGGAGTCGTCATGCTAGAGCTTCTGACTGGCCGGAAACCGTT
TGACAGGACCCGACCGCGGCCTGAGCAGTCACTGGTCCGATGGGCTACTCCGCAGCTGCA
CGACATCGACGCGCTGGACCAGATGGTCGACCCCGCGCTGCAAGGGCTGTACCCGTCCAA
ATCCCTCTCCCGCTTCGCCGATGCCATCGCCCTTTGTGTTCAGCCTGAGCCGGAGTTTCG
GCCGCCGATGTCGGAGGTCGTGCAGTCGCTGGTGCGCCTGGTGCAGAGGGCGAACATGAC
GAGGATGCACGAGAGCCAGTCGCGGCGCCACGGCGAATCCGGCGGGGACTACGAGTTTTG
AGCGAGACAAAACTGTGCCTTTGCCTAGATTTTTTTCTTCTAAAAGTATAAAAATAGTTA
TAAACTCTCCTTGAGAGTTTTGAACTTCAAATATTCACATATAGTTTCAAACTATATTAG
ATAGGTAGTAGTTCAGAATAAGTATTTATCTGAAATAAGTATTGGTTCACATTTGCCTTT
GCGTTGCAGGCATTTTGTTTTGCTAAAGACACCCCCAAAACATTTGGAACGAACTTGGTT
GAGATTTCGATG