Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d022148_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:7:171253896:171257994:1 gene:Zm00001d022148 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:fowlpox viral protein homolog1 description: fowlpox viral protein homolog1
Sequence

ATGGGAACTCCAAACGAAATGATGGCATACTCTTCCCTGTCCAAAATGGACACCAGCCAG
AACCACGGAGCTGCTCTGTCCAATGTAGTTGCTGGAAACAACTATCCTGTTCAGGATTAT
CTTTATGAGCAAGCATCCGAACCAGACTTCCCAGAGTATGATTCAAGGGATGACCTGTTC
GCTCCAACACGAGCTAGTCCAAAAGTCAATCTAAATACTGTTCTAGGTGGTCTGGTTTCG
ATTGTTACAGGTGTAAACAAGAGTGAGGATGATGCATCGCAGCATGAAAGTTTTAGCACA
GACATATCATTCCTTAGATCTGACAAGAATGGTAATGTCAATGTGCACCCTTCCGTCTGT
GTTCCAAGTGCCCCACCACTACTTGAAGCGAATGCTTTACAATATAGTGCATACAAGGAG
GTGTTGCTAGCAGATCCACCAGAGTGGTTGCCAGATAGCTCTGCTAATGTGTGCCTACAG
TGCAACTTGCCTTTCACGGCTCTGACTCGTGGAAGGCACCATTGTCGGTTCTGTGGAGGT
ATATTCTGCAAAAACTGTTCCAAAGGAAGATGTTTGATGCCCATGAAATTCAGGATCCGT
GATCCTCAGAGAGTTTGTGATGCTTGCTATGAGAGGCTTGATCCACTTCAGGGATTATTG
ATCAACTACAATAGTAACTGCATGCAGCAAGCAAAACACGATGTCATGGATTGGACAAGC
ACTAGAAGCTGGTTGAACATGCCTGTTGGTGTATCAATGGAGTATGAGATATACAAGGCT
ACAAACACAATGAAGAAATATTGTCAGGTTGCTAGATTAAACCCTGAGAAGTCCATCCCA
TCATCTATTCTCAAGGGGGCGAAGGGACTTGCAATTCTAACAGTTGCCAAGGCAGGTGCA
GTTCTTACATACAAAGTTGGCACTGGTCTTGTGGTTGCTCGCAGATCTGATGGATCATGG
TCTGCTCCCTCTGCAATTTTATCTGTTGGCCTGGGATGGGGAGTGCAGATTGGAGGAGAA
CTGACAGACTTCATCATTGTGCTTCATGACCGTAAAGCTGTCAAGGCTTTCAGCAGTCGC
ATTCATCTTTCACTTGGGGCAGGATTGAGTGCTGCAGCAGGACCCATTGGCAGAGCATTT
GAGGCAGACGTTCGGGCCAGTGAAAAGGGTGCCTTCGTTGGGGTTTCACTGGAAGGGAAT
GTGGTGACAACCAGAATGGAGACCAATCTACGCTTCTACGGTGATGCATACCTGACGGCA
ACCGATATCCTGTTTGGGAGGGTGGAGCGGCCCCGAGCTGCCCAGCCCTTGTACTCAGCT
CTAGATGATCTGTTCTCCAAAATGGTTTGCTAG

Peptide Sequence

PEP ID

Zm00001d022148_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:7:171253896:171257994:1 gene:Zm00001d022148 transcript:Zm00001d022148_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:fowlpox viral protein homolog1 description: fowlpox viral protein homolog1
Sequence

MGTPNEMMAYSSLSKMDTSQNHGAALSNVVAGNNYPVQDYLYEQASEPDFPEYDSRDDLF
APTRASPKVNLNTVLGGLVSIVTGVNKSEDDASQHESFSTDISFLRSDKNGNVNVHPSVC
VPSAPPLLEANALQYSAYKEVLLADPPEWLPDSSANVCLQCNLPFTALTRGRHHCRFCGG
IFCKNCSKGRCLMPMKFRIRDPQRVCDACYERLDPLQGLLINYNSNCMQQAKHDVMDWTS
TRSWLNMPVGVSMEYEIYKATNTMKKYCQVARLNPEKSIPSSILKGAKGLAILTVAKAGA
VLTYKVGTGLVVARRSDGSWSAPSAILSVGLGWGVQIGGELTDFIIVLHDRKAVKAFSSR
IHLSLGAGLSAAAGPIGRAFEADVRASEKGAFVGVSLEGNVVTTRMETNLRFYGDAYLTA
TDILFGRVERPRAAQPLYSALDDLFSKMVC

Transcript Sequence

Transcript ID

Zm00001d022148_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:171253896:171257994:1 gene:Zm00001d022148 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:fowlpox viral protein homolog1 description: fowlpox viral protein homolog1
Sequence

GCCACAGCCTTAGTTCTTTCCTCGTCCTTCTCATCAATGTGGCAACGGAAAACCCAAAGA
CCCTGATAACTTATCCCCAAATTAACCGGTAGCGTAAAGCCGGTCGATTTCCGGACCCCA
TATTTTCTTCTATCTTCCCAGCTGCCGTTGCCGGCGGAAGAAGCCAATTGACGTGATCCC
CGCCGCCAAGCCCAACCCCGCCGACCGGAGCTGCATCCTCTCCTTCTCTCTCCCATACCA
CGACGAGACGATCCCATCGGCGCCCGCGCGGTCCCTTCGATCCAAGCAAGCGTAGTCCCT
TGTTCCTAGTATAACCTCTAAATGATTCCATGGGAACTCCAAACGAAATGATGGCATACT
CTTCCCTGTCCAAAATGGACACCAGCCAGAACCACGGAGCTGCTCTGTCCAATGTAGTTG
CTGGAAACAACTATCCTGTTCAGGATTATCTTTATGAGCAAGCATCCGAACCAGACTTCC
CAGAGTATGATTCAAGGGATGACCTGTTCGCTCCAACACGAGCTAGTCCAAAAGTCAATC
TAAATACTGTTCTAGGTGGTCTGGTTTCGATTGTTACAGGTGTAAACAAGAGTGAGGATG
ATGCATCGCAGCATGAAAGTTTTAGCACAGACATATCATTCCTTAGATCTGACAAGAATG
GTAATGTCAATGTGCACCCTTCCGTCTGTGTTCCAAGTGCCCCACCACTACTTGAAGCGA
ATGCTTTACAATATAGTGCATACAAGGAGGTGTTGCTAGCAGATCCACCAGAGTGGTTGC
CAGATAGCTCTGCTAATGTGTGCCTACAGTGCAACTTGCCTTTCACGGCTCTGACTCGTG
GAAGGCACCATTGTCGGTTCTGTGGAGGTATATTCTGCAAAAACTGTTCCAAAGGAAGAT
GTTTGATGCCCATGAAATTCAGGATCCGTGATCCTCAGAGAGTTTGTGATGCTTGCTATG
AGAGGCTTGATCCACTTCAGGGATTATTGATCAACTACAATAGTAACTGCATGCAGCAAG
CAAAACACGATGTCATGGATTGGACAAGCACTAGAAGCTGGTTGAACATGCCTGTTGGTG
TATCAATGGAGTATGAGATATACAAGGCTACAAACACAATGAAGAAATATTGTCAGGTTG
CTAGATTAAACCCTGAGAAGTCCATCCCATCATCTATTCTCAAGGGGGCGAAGGGACTTG
CAATTCTAACAGTTGCCAAGGCAGGTGCAGTTCTTACATACAAAGTTGGCACTGGTCTTG
TGGTTGCTCGCAGATCTGATGGATCATGGTCTGCTCCCTCTGCAATTTTATCTGTTGGCC
TGGGATGGGGAGTGCAGATTGGAGGAGAACTGACAGACTTCATCATTGTGCTTCATGACC
GTAAAGCTGTCAAGGCTTTCAGCAGTCGCATTCATCTTTCACTTGGGGCAGGATTGAGTG
CTGCAGCAGGACCCATTGGCAGAGCATTTGAGGCAGACGTTCGGGCCAGTGAAAAGGGTG
CCTTCGTTGGGGTTTCACTGGAAGGGAATGTGGTGACAACCAGAATGGAGACCAATCTAC
GCTTCTACGGTGATGCATACCTGACGGCAACCGATATCCTGTTTGGGAGGGTGGAGCGGC
CCCGAGCTGCCCAGCCCTTGTACTCAGCTCTAGATGATCTGTTCTCCAAAATGGTTTGCT
AGCCCATTTAGATTGGCGTGATACTCTGCATTGGTGGCATGCAGTCATGTATGTATATAA
ACATAAGGTAGCAGCAAAAATCCTAAACAGGAGATATGGAAGCGGAAAGAATGTACAGCT
TTTGATGGATGGTTTCACTACTGATAGCAGTCCATACATGTAAATATTGGCAGAAGAAGA
TTTAAGGGCTGTTTGGTTCGCACACTACTGATATCAGTACGCTGCAGTGTGCCACTGGTG
GACTCATCCATGCAATGGAAAATTTTAATACATTTGTTAGTTCGTTTGTGGCTTAGATTA
TTCGATGGGGAAGGGGGTATTTCGCTGCAGTCCCATGCTGTTGTAGTAGATTCTGTTAGT
GGAAGGAACGCTGCGATTTTTCCCCATACTGTACCTGTTGTGCTTACTGTTCACAAGGAT
TTCTCTATCAATAGTACTTTCATGCGCTTCAGGT