Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d021903_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:7:165717187:165721222:1 gene:Zm00001d021903 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glucan endo-1%2C3-beta-glucosidase 4

Sequence

ATGGCGTGTTTACCCTTCTTATGCTCATGGTTTTCAATGTTTCAGTTTGGTGGAAACCAC
TTCAAGTGGACATTAAAATTTGGGGCATTTGTTGGTATCACTATTGGCAATGACATGTCA
AACATACCACCAGCAACAGATATAGTGTCTATCCTCAAAGCAAAAAAGATTCAGCATGTT
CGCCTGCTTGATTCAGACCATCAAATGTTGAATGCCCTTGCAAATACTGGAATAGAAGTG
ATGGTTGGGGTTCCAAATGATCAGCTACTTCGTGTGGGCCAATCTCGTTCCACAGCTGCT
GATTGGATTAATAAGAATGTCGGTGCTTACATTCCGGCGACTAACATCACATATATTGCT
GTGGGTAATGAGGTCCTTACTACCATTCCCAATGCAGCACTTGTACTCGTACCTGCACTG
CAATTCCTCCAGTCAGCACTGTTGGCTGCGAACCTCAATACTCAAGTGAAAATTTCAAGT
CCTCATTCAATGGATGTGATCTCAAAGGCCTTTCCACCCTCTGCTGCGACTTTCAATTTG
ACATGGAGCTCAATAATGTCTCAATATCTTCAGTTTCTCAAGAATACGGGATCTTCGTTT
ATGCTGAATGCCCAACCATACTATGGCTATGTCGGAGGGCAAGGCGTATTTCCCTTGGAG
TATGCACTATTCCGCTCACTTAATCCGAACAGTCAAATCTCAGATCCTAACACCAATCTC
TTTTATACCAATATGTTTGATGCTATAATTGATGCTACCTACAACTCAATTCAAGCAATG
AATTTTACGGGCATTCCTGTTTTAGTCACAGCTTCTGGTTGGCCATGGCGTGGTGGGCCA
AGTGAGAAGGCTGCTACTGTTGATAATGCTTTGGCCTATAATACAAACCTCATACATCAT
GTACTGAACAATTCTGGTACTCCCAGCCAACCGAATAATCAGCCAAGCACCTACATCTTT
GAACTTTTCAATGAGGATAATCGGTCAGGGCCTGTATCAGAGCAAAATTGGGGGATTATG
TTTCCCAATGCAACCACTATATATTCTCTATCATTTGAGGACGTGGCCACAGCTATTCCT
GAATCACCAGCTTTGCGTGGGGTGTTTTGTGTGGCAAATTCAAGTGCATCCCATAGTGCA
CTGAAGCATAGTTTGGATTGGGCATGTGGCCCTGGTTCTGCAAACTGCAGTGCAGTTCAA
CCTGGGCAACCATGCTATGCATCAGATGATATTGTAGCTGTTGCTTCTTATGCTTTCAAC
GATTATTACCATAGAACACAGTCTAGTGGTGGTACATGCAACTTCAATGGCACCGCGATG
ATAACATCGACTGATCCAAGCCATGGTTCATGCATTTTCAGTGGAAGCGCTGGCGCCAAC
GGCAGCAACGGTGGAACAGCATCCGGGCCTGTAAGCCCGGACAGTTTTGCTTCAAAATCC
CAGTCGTGCTGGCTGACTCACCTAGTAGCCACATTGCTGCCAATTCTATTTGTAGTGATG
TAA

Peptide Sequence

PEP ID

Zm00001d021903_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:7:165717187:165721222:1 gene:Zm00001d021903 transcript:Zm00001d021903_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glucan endo-1%2C3-beta-glucosidase 4

Sequence

MACLPFLCSWFSMFQFGGNHFKWTLKFGAFVGITIGNDMSNIPPATDIVSILKAKKIQHV
RLLDSDHQMLNALANTGIEVMVGVPNDQLLRVGQSRSTAADWINKNVGAYIPATNITYIA
VGNEVLTTIPNAALVLVPALQFLQSALLAANLNTQVKISSPHSMDVISKAFPPSAATFNL
TWSSIMSQYLQFLKNTGSSFMLNAQPYYGYVGGQGVFPLEYALFRSLNPNSQISDPNTNL
FYTNMFDAIIDATYNSIQAMNFTGIPVLVTASGWPWRGGPSEKAATVDNALAYNTNLIHH
VLNNSGTPSQPNNQPSTYIFELFNEDNRSGPVSEQNWGIMFPNATTIYSLSFEDVATAIP
ESPALRGVFCVANSSASHSALKHSLDWACGPGSANCSAVQPGQPCYASDDIVAVASYAFN
DYYHRTQSSGGTCNFNGTAMITSTDPSHGSCIFSGSAGANGSNGGTASGPVSPDSFASKS
QSCWLTHLVATLLPILFVVM

Transcript Sequence

Transcript ID

Zm00001d021903_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:165717187:165721222:1 gene:Zm00001d021903 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glucan endo-1%2C3-beta-glucosidase 4

Sequence

ACGATAGATAGATGTGGTGTCCTTAAAGCCTTGCTCGCTGCTCTCTCGAGAGTAAAAAAA
TCCTAGCTTTTCTTGAGAGTTTCTGAGAAGTGTCCCAGCTCACAGCTAATCATATCCTTG
GGCACAAGAATATGTCGTCCAAGAGACTACATGGCGTGTTTACCCTTCTTATGCTCATGG
TTTTCAATGTTTCAGTTTGGTGGAAACCACTTCAAGTGGACATTAAAATTTGGGGCATTT
GTTGGTATCACTATTGGCAATGACATGTCAAACATACCACCAGCAACAGATATAGTGTCT
ATCCTCAAAGCAAAAAAGATTCAGCATGTTCGCCTGCTTGATTCAGACCATCAAATGTTG
AATGCCCTTGCAAATACTGGAATAGAAGTGATGGTTGGGGTTCCAAATGATCAGCTACTT
CGTGTGGGCCAATCTCGTTCCACAGCTGCTGATTGGATTAATAAGAATGTCGGTGCTTAC
ATTCCGGCGACTAACATCACATATATTGCTGTGGGTAATGAGGTCCTTACTACCATTCCC
AATGCAGCACTTGTACTCGTACCTGCACTGCAATTCCTCCAGTCAGCACTGTTGGCTGCG
AACCTCAATACTCAAGTGAAAATTTCAAGTCCTCATTCAATGGATGTGATCTCAAAGGCC
TTTCCACCCTCTGCTGCGACTTTCAATTTGACATGGAGCTCAATAATGTCTCAATATCTT
CAGTTTCTCAAGAATACGGGATCTTCGTTTATGCTGAATGCCCAACCATACTATGGCTAT
GTCGGAGGGCAAGGCGTATTTCCCTTGGAGTATGCACTATTCCGCTCACTTAATCCGAAC
AGTCAAATCTCAGATCCTAACACCAATCTCTTTTATACCAATATGTTTGATGCTATAATT
GATGCTACCTACAACTCAATTCAAGCAATGAATTTTACGGGCATTCCTGTTTTAGTCACA
GCTTCTGGTTGGCCATGGCGTGGTGGGCCAAGTGAGAAGGCTGCTACTGTTGATAATGCT
TTGGCCTATAATACAAACCTCATACATCATGTACTGAACAATTCTGGTACTCCCAGCCAA
CCGAATAATCAGCCAAGCACCTACATCTTTGAACTTTTCAATGAGGATAATCGGTCAGGG
CCTGTATCAGAGCAAAATTGGGGGATTATGTTTCCCAATGCAACCACTATATATTCTCTA
TCATTTGAGGACGTGGCCACAGCTATTCCTGAATCACCAGCTTTGCGTGGGGTGTTTTGT
GTGGCAAATTCAAGTGCATCCCATAGTGCACTGAAGCATAGTTTGGATTGGGCATGTGGC
CCTGGTTCTGCAAACTGCAGTGCAGTTCAACCTGGGCAACCATGCTATGCATCAGATGAT
ATTGTAGCTGTTGCTTCTTATGCTTTCAACGATTATTACCATAGAACACAGTCTAGTGGT
GGTACATGCAACTTCAATGGCACCGCGATGATAACATCGACTGATCCAAGCCATGGTTCA
TGCATTTTCAGTGGAAGCGCTGGCGCCAACGGCAGCAACGGTGGAACAGCATCCGGGCCT
GTAAGCCCGGACAGTTTTGCTTCAAAATCCCAGTCGTGCTGGCTGACTCACCTAGTAGCC
ACATTGCTGCCAATTCTATTTGTAGTGATGTAAATCATTGTAATCATGTCGCATTTTGGA
TGAGATGCCCGCAATTTATCGTGGATCTTGTCATTAGATACAGTAGTGACTAGCGAGCCA
TTTGTTCTGCTGTATTCAGGTAGATGCCATGTAACCTTATCCCAGAATTTCTTGCCCTAG
GAATCAGTACTTCGTCAAATCATCAATTTTGAACGCCAACTTGGAAAATTGAGCTGTGAC
AAGCCGAGAACTCTCTGAAATATTGGAAGTTCCAAATGATTT