Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d021900_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:7:165631367:165634363:1 gene:Zm00001d021900 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCGGAGGAGCAGGTCGTGCTTGTCCTGCGTGCCCATGGGGACGGCGGCGCTGCCCATT
GAGAACCACTTCGTCGCTCCGGCTGCGCTACCGTCGGTGCCCGCCTCAGATTCAGAGGAC
GGAGGATTTGGCAAGGGCAGCATAGACCTTGGAGGCCTAGAGGTGCGCCAGGTCACCACG
TTTGCCAAGGTCTGGTCCACCACACAGGGCGGCCAAGACGGCCTCGGCGCCACCTTCTTC
AAGCCCTCGCCGGTGCCCGCCGGCTTCTCCGTGCTCGGCCACTACGCGCAGCCCAACAAC
CGGCCTCTCTTCGGCCACGTCCTCGTCGGCCGGGACACGTCTGGCGCCGGCGGTGCGCTC
CTCGCCGCGCCAGTGGACTACGCCCTCGTCTGGTCCAGCCCGGACGGCGCCGGCCACTTC
TGGCTCCCCACGGCTCCCGAGGGCTACAAGGCCGTCGGCGTGGTGGTCACGGCCGCGGCG
GACAAGCCTTCACCCGACGAGGTCCGGTGCGTCCGCGCCGACTTCACCGACGCGTGCGAG
GCCGAGGACTCGGTGTGGAGCAGCGACAAGGACGGCTTCAGCGCGTCCACCCTGAGGCCG
GCGGTCCGCGGCATCGAAGCCCGCGGCGTGCACGCTGGCACGTTCCTCGCCCAGAGCAGC
GCGACGCCGGCGGCGGCGGCGGGCGTGTCAACGACGCTGGCGTGTCTGAAGAACAACAGC
GCGAGCTACACGTCCTCCATGCCCGACCTGGCCCAGCTGAACTCCCTCCTGGCGGCCTAC
GCGCCGCACGTGTACCTGCACCCGAACGAGCCCTACTTCCCGTCGTCGGTGGCGTGGTTC
TTCGAGAACGGCGCGCTGATGTACCAGAAGGGCAGCAGCCAGACCCCGACGCCGGTGGCC
GCCGACGGGTCGAACCTCCCGCAGGGCGGCGGCAACGACGGCGGGTACTGGCTCGACCTG
CCGGCGGACGGGAACCAGCGGGAGAAGGCCAAGAGGGGAGACCTCGCCGGCGCGAAGGTG
TACGTGCAGGCGAAGCCGATGCTCGGCGGGACGGTGGCCGACCTCGCGGTGTGGATCTTC
TACCCGTTCAACGGGCCGGCGCGCGCCAAGGTCGGCCTCATCCCGTCGATCCCGCTCGGC
GAGATCGGCGAGCACGTCGGCGACTGGGAGCACGTGACGCTGCGCGTCAGCAACTTCTCC
GGCGAGCTCCTCCGGATGTACTTCTCGCAGCACAGCGCGGGCACCTGGGTGGACGCGTCG
CGGCTGGAGTACCTCGACGGCGGGGACGGCGGCGGGAGCAGGCCGGTGGCATACGCGTCG
CTGCACGGGCACGCGTTCTACCCGAACGCGGGGACGGTGCTGCAGGGGAACTCGGGCCTG
GGCATCGGGATCCGGAACGACTGCGCCAGAGGGAGCAGGCTGGACACCGGCGCGGGGCGG
TGCGAGGTGGTGTCGGCGGAGTACCTCGGCGTCAAGGAGCCGGCGTGGCTCGGGTTCGAG
CGCGAGTGGGGCCCGCGGGATGAGTACGACATCGGGCGCGAGATCAACCGCGCCGCTAGG
CTCTTGCCACGTTCGGTGAGGGAGCGGCTAGCCAAGCTGGTGGAGAAGGTGCTCGTCGGG
GAGGGCCCGACGGGGCCCAAGATGCATGGTAACTGGAGAAACGACGAGAGGGAAGCCTGA

Peptide Sequence

PEP ID

Zm00001d021900_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:7:165631367:165634363:1 gene:Zm00001d021900 transcript:Zm00001d021900_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MRRSRSCLSCVPMGTAALPIENHFVAPAALPSVPASDSEDGGFGKGSIDLGGLEVRQVTT
FAKVWSTTQGGQDGLGATFFKPSPVPAGFSVLGHYAQPNNRPLFGHVLVGRDTSGAGGAL
LAAPVDYALVWSSPDGAGHFWLPTAPEGYKAVGVVVTAAADKPSPDEVRCVRADFTDACE
AEDSVWSSDKDGFSASTLRPAVRGIEARGVHAGTFLAQSSATPAAAAGVSTTLACLKNNS
ASYTSSMPDLAQLNSLLAAYAPHVYLHPNEPYFPSSVAWFFENGALMYQKGSSQTPTPVA
ADGSNLPQGGGNDGGYWLDLPADGNQREKAKRGDLAGAKVYVQAKPMLGGTVADLAVWIF
YPFNGPARAKVGLIPSIPLGEIGEHVGDWEHVTLRVSNFSGELLRMYFSQHSAGTWVDAS
RLEYLDGGDGGGSRPVAYASLHGHAFYPNAGTVLQGNSGLGIGIRNDCARGSRLDTGAGR
CEVVSAEYLGVKEPAWLGFEREWGPRDEYDIGREINRAARLLPRSVRERLAKLVEKVLVG
EGPTGPKMHGNWRNDEREA

Transcript Sequence

Transcript ID

Zm00001d021900_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:165631367:165634363:1 gene:Zm00001d021900 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATACATTGCCACTTGTCGGGGAGGAGAGTCCGGAGCTGAGACGGCGAGCTGCCTAGCTCC
GTTCCTGCTCTATATCTCAGCTCCTCCGTTCTGTCCTGTGGCCCCGAGCTGAGCTGCCAA
GGATACGTACGTACGTACGTCTTGAGGGAGGCTGCCGGTCGCCCTCTTCTCTCGTCGACC
TCGTCGGGGTTATGCGGAGGAGCAGGTCGTGCTTGTCCTGCGTGCCCATGGGGACGGCGG
CGCTGCCCATTGAGAACCACTTCGTCGCTCCGGCTGCGCTACCGTCGGTGCCCGCCTCAG
ATTCAGAGGACGGAGGATTTGGCAAGGGCAGCATAGACCTTGGAGGCCTAGAGGTGCGCC
AGGTCACCACGTTTGCCAAGGTCTGGTCCACCACACAGGGCGGCCAAGACGGCCTCGGCG
CCACCTTCTTCAAGCCCTCGCCGGTGCCCGCCGGCTTCTCCGTGCTCGGCCACTACGCGC
AGCCCAACAACCGGCCTCTCTTCGGCCACGTCCTCGTCGGCCGGGACACGTCTGGCGCCG
GCGGTGCGCTCCTCGCCGCGCCAGTGGACTACGCCCTCGTCTGGTCCAGCCCGGACGGCG
CCGGCCACTTCTGGCTCCCCACGGCTCCCGAGGGCTACAAGGCCGTCGGCGTGGTGGTCA
CGGCCGCGGCGGACAAGCCTTCACCCGACGAGGTCCGGTGCGTCCGCGCCGACTTCACCG
ACGCGTGCGAGGCCGAGGACTCGGTGTGGAGCAGCGACAAGGACGGCTTCAGCGCGTCCA
CCCTGAGGCCGGCGGTCCGCGGCATCGAAGCCCGCGGCGTGCACGCTGGCACGTTCCTCG
CCCAGAGCAGCGCGACGCCGGCGGCGGCGGCGGGCGTGTCAACGACGCTGGCGTGTCTGA
AGAACAACAGCGCGAGCTACACGTCCTCCATGCCCGACCTGGCCCAGCTGAACTCCCTCC
TGGCGGCCTACGCGCCGCACGTGTACCTGCACCCGAACGAGCCCTACTTCCCGTCGTCGG
TGGCGTGGTTCTTCGAGAACGGCGCGCTGATGTACCAGAAGGGCAGCAGCCAGACCCCGA
CGCCGGTGGCCGCCGACGGGTCGAACCTCCCGCAGGGCGGCGGCAACGACGGCGGGTACT
GGCTCGACCTGCCGGCGGACGGGAACCAGCGGGAGAAGGCCAAGAGGGGAGACCTCGCCG
GCGCGAAGGTGTACGTGCAGGCGAAGCCGATGCTCGGCGGGACGGTGGCCGACCTCGCGG
TGTGGATCTTCTACCCGTTCAACGGGCCGGCGCGCGCCAAGGTCGGCCTCATCCCGTCGA
TCCCGCTCGGCGAGATCGGCGAGCACGTCGGCGACTGGGAGCACGTGACGCTGCGCGTCA
GCAACTTCTCCGGCGAGCTCCTCCGGATGTACTTCTCGCAGCACAGCGCGGGCACCTGGG
TGGACGCGTCGCGGCTGGAGTACCTCGACGGCGGGGACGGCGGCGGGAGCAGGCCGGTGG
CATACGCGTCGCTGCACGGGCACGCGTTCTACCCGAACGCGGGGACGGTGCTGCAGGGGA
ACTCGGGCCTGGGCATCGGGATCCGGAACGACTGCGCCAGAGGGAGCAGGCTGGACACCG
GCGCGGGGCGGTGCGAGGTGGTGTCGGCGGAGTACCTCGGCGTCAAGGAGCCGGCGTGGC
TCGGGTTCGAGCGCGAGTGGGGCCCGCGGGATGAGTACGACATCGGGCGCGAGATCAACC
GCGCCGCTAGGCTCTTGCCACGTTCGGTGAGGGAGCGGCTAGCCAAGCTGGTGGAGAAGG
TGCTCGTCGGGGAGGGCCCGACGGGGCCCAAGATGCATGGTAACTGGAGAAACGACGAGA
GGGAAGCCTGATAAAGGCTTCGTATCCTTAACTGTACGATTCGTGAGGTATATACGGATC
AGACGGTTTGCGATTGAAAGGATAGCGTGCTCATTAGAGGAGCTAAAAGGATTGGTTGTG
TCATTGTGTGTGTGCGTGCCTGCGTGGCAGTGTATTTCCATCTCAGCTGTATGTAGGCAA
CGACTGCTATGCAAGCAGTCCTTCTGTGCAAGCGTGCAAGCAAATCATCTCATCCATTAG
ATCATGATCCAACCGTAGGTCATATTTAACACTTAAACCCTTTCACCACCAGCTCAATAA
TCTTTATAAAAAAAATCCTAACAAACCATGGTTGTATCTATGGTTGGATCGTAATCTAAT
TGATAAAATGGTTTGTTTGCACGCTTGCACAGAAGGACTATTTGCATAACAGTCGTTGCC
GCTGTATGTATTCGATAATGTGTAGCATTGTTTGGTTTGCTGTTTA