Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d021881_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:7:165331892:165337693:-1 gene:Zm00001d021881 gene_biotype:protein_coding transcript_biotype:protein_coding description:Root border cell-specific protein

Sequence

ATGCCCTTCCTGCTCACGCCGGGCGCTCGGGCGGTGCCCTCACCGTCAACGCTCTCGCGC
CTACTGCTTCCGCTCCACCTACAAATTACTAATGGCCGGCACAACCACCAGCACGGTCAC
GTCCCCGCCTCTCCCCTCCTATACCCTCGCCTCCGCAACCGCCGCAGCCGATTCTTCGCG
GCCTCCTCCTCCTCCTCCTCGCCTCAGATGGCGGCGCCTGCCGACGCCGCCGGTGGCTCC
TCTGACGCGTTCGAGGTGATCCGCGTTCACCAGGCAAAAGCTGTTCGTCTTTCTCCAGTT
GAAGAAATACGGACCATTATGGACCGAAGTGTCAGATGTGTTCTTGCTACCCATTCTCAG
GATCATGCTGGTTATCCATCTGGTTCAATGGTTGATTTTGCATGTGATCAGGATGGTTAC
CCCATATTAGCAGTGAGTAGTTTAGCAGTCCATTCAAAGAATCTCTCTGGAAATCCTAAA
TGCTCACTTCTTGTTGCCAAAGATCCTGAGGACAGAACTGATACTGTAATCACTGTATAT
GGCGACGCTGTTCCTGTTTCTGACGAAGAAAAAGATTCAGTGAGAAGTGCTTACCTACGC
AGGCACCCTGATGCTTTCTGGGTTGACTTTGGTGACTTCAGTTTCCTGCACATCAAACCT
AAAGCTGTGCGCTATGTATCTGGCGTTGCAACTGCTCTCCTTGGTTCTGGAGAATTCAAT
GTTGCAGAGTATAAGGAAGCAAAAGTTGATCCAATATCTCAATTCTCAACTCCTATCACA
AGCCATATGAACAAGGATCATGCCAATGATACAAAGCTCATTGTGCAACACTCCACTACT
GTCAAGGCAAGAAAATGA

Peptide Sequence

PEP ID

Zm00001d021881_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:7:165331892:165337693:-1 gene:Zm00001d021881 transcript:Zm00001d021881_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Root border cell-specific protein

Sequence

MPFLLTPGARAVPSPSTLSRLLLPLHLQITNGRHNHQHGHVPASPLLYPRLRNRRSRFFA
ASSSSSSPQMAAPADAAGGSSDAFEVIRVHQAKAVRLSPVEEIRTIMDRSVRCVLATHSQ
DHAGYPSGSMVDFACDQDGYPILAVSSLAVHSKNLSGNPKCSLLVAKDPEDRTDTVITVY
GDAVPVSDEEKDSVRSAYLRRHPDAFWVDFGDFSFLHIKPKAVRYVSGVATALLGSGEFN
VAEYKEAKVDPISQFSTPITSHMNKDHANDTKLIVQHSTTVKARK

Transcript Sequence

Transcript ID

Zm00001d021881_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:165331892:165337693:-1 gene:Zm00001d021881 gene_biotype:protein_coding transcript_biotype:protein_coding description:Root border cell-specific protein

Sequence

AGGAAGGGCCAGTCACGGCACCGCAGCATCGCGGTCGCAGATTGCCGTGCCGAGCGAAGC
GACCACAACAAAGCGGCCAGCGAGGCTCTCCGACACCGAGCCGCGCGCACGCAACGATGC
CCTTCCTGCTCACGCCGGGCGCTCGGGCGGTGCCCTCACCGTCAACGCTCTCGCGCCTAC
TGCTTCCGCTCCACCTACAAATTACTAATGGCCGGCACAACCACCAGCACGGTCACGTCC
CCGCCTCTCCCCTCCTATACCCTCGCCTCCGCAACCGCCGCAGCCGATTCTTCGCGGCCT
CCTCCTCCTCCTCCTCGCCTCAGATGGCGGCGCCTGCCGACGCCGCCGGTGGCTCCTCTG
ACGCGTTCGAGGTGATCCGCGTTCACCAGGCAAAAGCTGTTCGTCTTTCTCCAGTTGAAG
AAATACGGACCATTATGGACCGAAGTGTCAGATGTGTTCTTGCTACCCATTCTCAGGATC
ATGCTGGTTATCCATCTGGTTCAATGGTTGATTTTGCATGTGATCAGGATGGTTACCCCA
TATTAGCAGTGAGTAGTTTAGCAGTCCATTCAAAGAATCTCTCTGGAAATCCTAAATGCT
CACTTCTTGTTGCCAAAGATCCTGAGGACAGAACTGATACTGTAATCACTGTATATGGCG
ACGCTGTTCCTGTTTCTGACGAAGAAAAAGATTCAGTGAGAAGTGCTTACCTACGCAGGC
ACCCTGATGCTTTCTGGGTTGACTTTGGTGACTTCAGTTTCCTGCACATCAAACCTAAAG
CTGTGCGCTATGTATCTGGCGTTGCAACTGCTCTCCTTGGTTCTGGAGAATTCAATGTTG
CAGAGTATAAGGAAGCAAAAGTTGATCCAATATCTCAATTCTCAACTCCTATCACAAGCC
ATATGAACAAGGATCATGCCAATGATACAAAGCTCATTGTGCAACACTCCACTACTGTCA
AGGCAAGAAAATGATGAAGTCTACTTTAATGCTTTCTTTTGTTCCAACAATATTACAATA
AAGTATTTATTCGAATAACATTACTGCAAAACCTGATGTATCTTGAAGAAAATTGAGCCT
AAATATTCTTTTCTTGAGGGTGCTGTCTGTTTTCTTATAATGTAGTTATTTCTGTAAATA
AATAGCTAGCATTTTTTATTGATCATATATCATATATGTGTATCTTTTGTTCTTGACACA
TTGTGTTGCTTGTAGTTCGGAAAGTGAAAATTGTACTCTGTTTAAGCATATGCTTGCAGT
CTTGTCAATCCACAGGTGCAAAAGTAGATACATCATGCAGGGCTAGATCTGCGTGCAACT
GTGCAATTCTTGCCTGGGAAAACAGCCAGCCACTCATTCAAAATTGCAAACTAGTTTACA
AATGAATGTAACTGTTGGAAGACTGAAAACCCTAACCCTAATTGGGTAGGGGATGTATTA
ATATATATCAAGGTACATGGGCCAAGGCCCATGACACTACACAGTATGCTAACAGTAACC
ATTTACTTTATAGTCTATTTGTTATGCATATCTGTCTGTATACTTGGCAACCAGAAGTGT
TATTCTGTGTTTTGCTGGAATCTGCATTGAAGAACTGGATTCATTGCTGTAGTTAGCATT
GTACATAGTGTTTATTTATCAGTATTCCCAAACAATGCAGTCATGAAACTCTTGATCACC
CATCAGCAGGGGATAGTAGCAAAGGGGAATTGTTCAGTGCTTTGCACAACTTCTTTTACA
GTTTGTCCATTTTGTGGTGTTACACTTTTGACCAAATATTGCTTTCAAATTTATTGAAAC
TTGAAAGATGACAAATACAATTCAGGTGGATTTTGCTTATATGCTGGACGTGGACAGCCT
TGGTTTTAATGTGAAGGCTGGTTATGATGGAAGTGTTCTGAAGTTGAGAATCCCCTTCCC
AAGACAGGCGCAAGACAGGAAGGATGTTAAGACACTAATTGTGGAAATGCTCCAAGCTGC
AAGAGCCTCATCTTCAGATCCTGAATGATGTCGTCGGTCTGGAATGTGAAGAATCGTGCA
AATTGAAGTAAACCTAATGAATAAGAGTTATTGGGTTTCCGTCCAATCTCTGCACCAACT
GAAGGTGGGGCCACAGACACTCCATGGATTGATACACGACCTTGTATATAATATAACAAA
GAGCGCTTGAGCCTTGAAGTACTTGTAGTTGAATGAATACAAAGCGATTTCACTATATTG
TACTTACTGACATGCATAACAATTTCAACGGATTGTTCACC