Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d021871_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:7:165007161:165021222:-1 gene:Zm00001d021871 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGTCTTCCGCACCCCCGCCTCCGCCGTCTCTGAACCCCGAAGTGCCCCCGCGCATCGTC
CGCGCCCCCCCGCGCCGGCCTCCTCCGCGCGCGCCCGGTCCGCCGCCTTGGGCGGAGCGT
CGGCCTGCCGTGTCCGTCGACCTCGACCGCGGCCGTCGCTCGGTCCGCACCGAGGTGGAC
GGCGTCCGCGCCGCGTCGCTCCCTGCGCGACACCGCCTCCGCGTGGAGGGCAACCGGTGG
CAGCGGGACTGGAAGGTGTCCGAGGTCGTCGCGCGCTTGCTCGCGCTGCCTCATGCCGAC
GCGGACGCCGTCGACGCCGTGCTCAACTGCTGGGCCGGTCGCTTCGCACGCCGCAACTTC
CCGCTGCTCATCAGAGAAATTGCAATTTCTGGATCCTTGAAACATGCTGTGCATGTGTTC
CGCTGGATGAAAAATCAGGAGAACTACTGTGCTCGCAATGACATTTATGGCATGATGATT
AGGTTACATGCTAGACACAACAAGGTTGATCAAGCACGTGGCCTGTTCTTTGAGATGCAA
GAATGGCGGTGCAAGCCTAATACTGATACATACAACTCTTTGATCCATGCTCATGCTCGA
GCTGGCCAGTGGTGTTGGGCCATCAACATTATGGATGATATGCAACGTGCCGCTATACCT
CCTAGCCGAACTACGTATAATAATGTTATAAATGCATGTGGAGCTGCTGGTAACTGGAAG
AAAGCTTTAGAACTTTGTAAGAAGATGACTGAAAATGGTGTAGGGCCAGATTTGATCACA
CACAACATTGTTTTGTCTGCTTTTAAGAATGGAGCTCAGTACTCAAAAGCCATAGCTTAC
TTTGAAATTATGAAATCCTCTAAAGTTGCCCCTGATACATGCACTATGAATATTGTGATC
CATTGCCTTGTAAAGATTGGGCTGTATGGGGAAGCTATTGAGTTGTTTAACTCAATGAGG
GAAAGAAGAACAACATGTCATCCAGATGTCGTTACATATACTAGCATAATGTATTCTTAT
TCTGTTTGTGGGCAAGCTGAAAATTGCAAGGCGGTCTTTGATATAATGGTTGCTGAAGGT
GTCAGACCTAATATTGTATCCTACAATGCACTTTTGGGTGCTTACGCCTCACATGGTATG
CACACAGAGGCCTTGGAGACTTTTAAATTACTGAAGCAAAATGGGTTGAGACCTGATATA
GTTTCCTATACCTCCTTACTTAATGCTTATGGTAGATCTGCACAGCCTGAGAAAGCTAGG
GAGGTCTTTAATGAAATGAGGAAGAATGCATGCAAGCCAAATAAAGTCAGTTACAATGCA
CTTATTGATGCTTATGGATCTGCTGGAATGTTGAAGGAAGCGATTAGTCTGTTGCATGAA
ATGGAGCAAGATGGCATTCAACCGGATGTTATTTCAATAAGTACTCTGTTAACAGCATGT
GGCCGCTGCAAGCAGCTAACTAAAATTGACATAATTCTTGCAGCAGCTAAGTCTCGAGGG
ATCCAACTAAATACAGTTGCTTACAACTCAGGCATCGGAAGTTATTTAAGTTTGGGAGAT
TATAAGAAAGCTTTGGTGTTATACACGTCAATGAGGGCAGGCAATGTGAAGCCAGATGCT
GTGACTTACAATATACTCATTAGTGGATCTTGTAAATTGGGAAGGTATGTAGAGTCTCTG
AAATTTTTTGAAGACATGCTGGACCTGAATATTCATTTGACCAAGGAAGTCTACTCATCC
GTGATTTGCTCATATGTCAAACAGGCAAGTGGCAAATTAACTGAAGCAGCATCTACTTTT
AATTCTATGAAAGAAACTGGTTGCTTCCCCGATGTTTTGACATATACGACATTAATTAAA
GCATATAGTGATGATGGGAGCTGGAGGAGAGCATGGGACCTATTCAAAGAGATGGAAAAT
AATGGCACACAGCCAGATGCTATTGTCTGTTCATCCCTCATGGAAGCATTGAATAAGGGA
GGTCAACCTGAAAGGGTCCTTCAGTTGATAGAATTCATGAAGCAAAAAAAGATTCAATTG
AACCAAAAGGCTTATTTTGAGATAATATCTTCATGCACCATGTTACGAGACTGGAAAACA
GCAAGTCAAATAATTGAACATTTGGATTCCTCTCTCTCATCTATTTCTTTTGGCACACTC
AACCATATTTTAAATTTTCTTGGAAAATGTGGCAGGACAGAGAGCATGATGAAGGTTTTG
CAGTGGATGGAAGATGCTGGAGTCTGCCCAACACTCTATATGTATCAAAGCGTGCTTCCA
TATATCTGGAGAGACAACAGTATGGACTATGTTACTCTCATGCAAGAAAAAATAACTTGA

Peptide Sequence

PEP ID

Zm00001d021871_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:7:165007161:165021222:-1 gene:Zm00001d021871 transcript:Zm00001d021871_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

MSSAPPPPPSLNPEVPPRIVRAPPRRPPPRAPGPPPWAERRPAVSVDLDRGRRSVRTEVD
GVRAASLPARHRLRVEGNRWQRDWKVSEVVARLLALPHADADAVDAVLNCWAGRFARRNF
PLLIREIAISGSLKHAVHVFRWMKNQENYCARNDIYGMMIRLHARHNKVDQARGLFFEMQ
EWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWK
KALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVI
HCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEG
VRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAR
EVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTAC
GRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDA
VTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQASGKLTEAASTF
NSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKG
GQPERVLQLIEFMKQKKIQLNQKAYFEIISSCTMLRDWKTASQIIEHLDSSLSSISFGTL
NHILNFLGKCGRTESMMKVLQWMEDAGVCPTLYMYQSVLPYIWRDNSMDYVTLMQEKIT

Transcript Sequence

Transcript ID

Zm00001d021871_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:165007161:165021222:-1 gene:Zm00001d021871 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

GACGCAGTCCGGAAACGCGTCGCCCAGACGCCCACACATCCATCCACAACGGTAAAGCCG
CCGCGGCGATGTCTTCCGCACCCCCGCCTCCGCCGTCTCTGAACCCCGAAGTGCCCCCGC
GCATCGTCCGCGCCCCCCCGCGCCGGCCTCCTCCGCGCGCGCCCGGTCCGCCGCCTTGGG
CGGAGCGTCGGCCTGCCGTGTCCGTCGACCTCGACCGCGGCCGTCGCTCGGTCCGCACCG
AGGTGGACGGCGTCCGCGCCGCGTCGCTCCCTGCGCGACACCGCCTCCGCGTGGAGGGCA
ACCGGTGGCAGCGGGACTGGAAGGTGTCCGAGGTCGTCGCGCGCTTGCTCGCGCTGCCTC
ATGCCGACGCGGACGCCGTCGACGCCGTGCTCAACTGCTGGGCCGGTCGCTTCGCACGCC
GCAACTTCCCGCTGCTCATCAGAGAAATTGCAATTTCTGGATCCTTGAAACATGCTGTGC
ATGTGTTCCGCTGGATGAAAAATCAGGAGAACTACTGTGCTCGCAATGACATTTATGGCA
TGATGATTAGGTTACATGCTAGACACAACAAGGTTGATCAAGCACGTGGCCTGTTCTTTG
AGATGCAAGAATGGCGGTGCAAGCCTAATACTGATACATACAACTCTTTGATCCATGCTC
ATGCTCGAGCTGGCCAGTGGTGTTGGGCCATCAACATTATGGATGATATGCAACGTGCCG
CTATACCTCCTAGCCGAACTACGTATAATAATGTTATAAATGCATGTGGAGCTGCTGGTA
ACTGGAAGAAAGCTTTAGAACTTTGTAAGAAGATGACTGAAAATGGTGTAGGGCCAGATT
TGATCACACACAACATTGTTTTGTCTGCTTTTAAGAATGGAGCTCAGTACTCAAAAGCCA
TAGCTTACTTTGAAATTATGAAATCCTCTAAAGTTGCCCCTGATACATGCACTATGAATA
TTGTGATCCATTGCCTTGTAAAGATTGGGCTGTATGGGGAAGCTATTGAGTTGTTTAACT
CAATGAGGGAAAGAAGAACAACATGTCATCCAGATGTCGTTACATATACTAGCATAATGT
ATTCTTATTCTGTTTGTGGGCAAGCTGAAAATTGCAAGGCGGTCTTTGATATAATGGTTG
CTGAAGGTGTCAGACCTAATATTGTATCCTACAATGCACTTTTGGGTGCTTACGCCTCAC
ATGGTATGCACACAGAGGCCTTGGAGACTTTTAAATTACTGAAGCAAAATGGGTTGAGAC
CTGATATAGTTTCCTATACCTCCTTACTTAATGCTTATGGTAGATCTGCACAGCCTGAGA
AAGCTAGGGAGGTCTTTAATGAAATGAGGAAGAATGCATGCAAGCCAAATAAAGTCAGTT
ACAATGCACTTATTGATGCTTATGGATCTGCTGGAATGTTGAAGGAAGCGATTAGTCTGT
TGCATGAAATGGAGCAAGATGGCATTCAACCGGATGTTATTTCAATAAGTACTCTGTTAA
CAGCATGTGGCCGCTGCAAGCAGCTAACTAAAATTGACATAATTCTTGCAGCAGCTAAGT
CTCGAGGGATCCAACTAAATACAGTTGCTTACAACTCAGGCATCGGAAGTTATTTAAGTT
TGGGAGATTATAAGAAAGCTTTGGTGTTATACACGTCAATGAGGGCAGGCAATGTGAAGC
CAGATGCTGTGACTTACAATATACTCATTAGTGGATCTTGTAAATTGGGAAGGTATGTAG
AGTCTCTGAAATTTTTTGAAGACATGCTGGACCTGAATATTCATTTGACCAAGGAAGTCT
ACTCATCCGTGATTTGCTCATATGTCAAACAGGCAAGTGGCAAATTAACTGAAGCAGCAT
CTACTTTTAATTCTATGAAAGAAACTGGTTGCTTCCCCGATGTTTTGACATATACGACAT
TAATTAAAGCATATAGTGATGATGGGAGCTGGAGGAGAGCATGGGACCTATTCAAAGAGA
TGGAAAATAATGGCACACAGCCAGATGCTATTGTCTGTTCATCCCTCATGGAAGCATTGA
ATAAGGGAGGTCAACCTGAAAGGGTCCTTCAGTTGATAGAATTCATGAAGCAAAAAAAGA
TTCAATTGAACCAAAAGGCTTATTTTGAGATAATATCTTCATGCACCATGTTACGAGACT
GGAAAACAGCAAGTCAAATAATTGAACATTTGGATTCCTCTCTCTCATCTATTTCTTTTG
GCACACTCAACCATATTTTAAATTTTCTTGGAAAATGTGGCAGGACAGAGAGCATGATGA
AGGTTTTGCAGTGGATGGAAGATGCTGGAGTCTGCCCAACACTCTATATGTATCAAAGCG
TGCTTCCATATATCTGGAGAGACAACAGTATGGACTATGTTACTCTCATGCAAGAAAAAA
TAACTTGA