Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d021821_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:7:163714668:163720328:1 gene:Zm00001d021821 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable arabinosyltransferase ARAD1
Sequence

ATGTGGGAGCGCGGCAGGCCGCCCCGCAAGCCGCGCCCGTCCCCAATCCTCGTGCCGCCG
CCACCGTCGTCGCCGCCTCCCCGCCTGAACCTCCTCCTCCCGAGATCCCTCCTCGCGCTC
GCCGCGCGCGCCATGCCGTCGCGCCGCCCCTCCCCGGTCCTCCTCCTCCTCCTCGCGCTC
TCGCTCGCCCTCCTCTTCCTTCTCCTCTCCCCTTCCTTCCCCTCCACCTCCCGCTTCTCT
CGCTCCCTCAGCTCTGGCTCCGCTTTCGCCTCCTCATCTCCGGCGTCAACCTCCGCCCCG
CCTGCACCCGTCAAGATCTACCTGTACGACCTGCCGGCCAAGTTTACCTACGGCGTCGTC
CGTAGCTATAAGGCTGCGCGTGCGACATCTGGCTCCGCGGACGCCGCTGCTACTCTGCCC
GACGAGCAACTGCGGTACCCGGGACACCAGCACTCGGCGGAGTGGTGGCTCTTCAAGGAC
CTGCTCCGACGCAGGCCGCAGGACCGCCCCGTGGCACGCGTGGACGACCCGAGCGACGCC
GACCTCTTCTACGTGCCCTTCTTCTCCTCTCTCAGCCTTGTTGTCAACCCCATCCGCTCT
CCGCTGGCAGCAAACGCCTCTGGGGCGGGGACAGCGTACAGCGACGAGGCCTTGCAAGAG
GAGTTGCTAGAGTGGCTGGAGCGGCAACTTTACTGGCAGCGCCACAGGGGGAGGGATCAC
GTTTTCATCTGCCAGGATCCCAATGCCCTTTACAGGGTGGTCGATCGGATCAGCAATGCC
GTACTCCTGGTTTCTGATTTCGGCAGGTTGCGCAGCGACCAGGCATCTCTCGTCAAGGAT
GTCATCCTGCCCTACTCACATCGAATCAACTCCTTCAAGGGTGAGGTCGGGGTGGATGGT
CGCCCCTCTTTGCTGTTCTTCATGGGCAATAGGTACCGCAAGGAGGGAGGGAAGGTTCGT
GATGCACTTTTTCAGATTCTTGAAAACGAGGATGATGTAACCATAAAACATGGAACACAA
TCGAGGGAGAGTCGGCGTGAAGCTACACAAGGAATGCACTCATCTAAATTTTGCCTGCAT
CCTGCCGGAGATACTCCCTCAGCATGCAGATTATTTGATGCACTTGTCAGTCTGTGTGTT
CCTGTTATAGCCAGTGATTACATTGAACTTCCATTCGAAGATATTATAGACTACAATAAA
ATATCAATATTTGTTGGGACAAGCAAAGCAGTACAGCCTGGATACTTAACTTCAACTCTT
CGAAGAATCAGTTCAGAGAGGATTCTGGAGTACCAGAGGGAAATAAAAAAGGTCAGACAT
TACTTTGAGTACGAGGATCCGAATGGACCAGTGAATGAGATTTGGCGCCAAGTATCCCTT
AAAGCACCACTGATAAAGTTGTTGACTAACCGCGACAAACGGTTGCTTGAAAGAGGCACC
AATGGAACAGATTGTTCGTGCATCTGCTCTACAACTCCAACTGACATAACTGCGGCCAGT
TAA

Peptide Sequence

PEP ID

Zm00001d021821_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:7:163714668:163720328:1 gene:Zm00001d021821 transcript:Zm00001d021821_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable arabinosyltransferase ARAD1
Sequence

MWERGRPPRKPRPSPILVPPPPSSPPPRLNLLLPRSLLALAARAMPSRRPSPVLLLLLAL
SLALLFLLLSPSFPSTSRFSRSLSSGSAFASSSPASTSAPPAPVKIYLYDLPAKFTYGVV
RSYKAARATSGSADAAATLPDEQLRYPGHQHSAEWWLFKDLLRRRPQDRPVARVDDPSDA
DLFYVPFFSSLSLVVNPIRSPLAANASGAGTAYSDEALQEELLEWLERQLYWQRHRGRDH
VFICQDPNALYRVVDRISNAVLLVSDFGRLRSDQASLVKDVILPYSHRINSFKGEVGVDG
RPSLLFFMGNRYRKEGGKVRDALFQILENEDDVTIKHGTQSRESRREATQGMHSSKFCLH
PAGDTPSACRLFDALVSLCVPVIASDYIELPFEDIIDYNKISIFVGTSKAVQPGYLTSTL
RRISSERILEYQREIKKVRHYFEYEDPNGPVNEIWRQVSLKAPLIKLLTNRDKRLLERGT
NGTDCSCICSTTPTDITAAS

Transcript Sequence

Transcript ID

Zm00001d021821_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:163714668:163720328:1 gene:Zm00001d021821 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable arabinosyltransferase ARAD1
Sequence

TCGCATCCCAATCTCCGTCGTCCCCCGCGGCCCCGCCTCACTCCTTACGCCGCACTCCAC
CTCCACATCGCCGCCCACACCCGACCGCGTGGCCGGCCTCATGTGGGAGCGCGGCAGGCC
GCCCCGCAAGCCGCGCCCGTCCCCAATCCTCGTGCCGCCGCCACCGTCGTCGCCGCCTCC
CCGCCTGAACCTCCTCCTCCCGAGATCCCTCCTCGCGCTCGCCGCGCGCGCCATGCCGTC
GCGCCGCCCCTCCCCGGTCCTCCTCCTCCTCCTCGCGCTCTCGCTCGCCCTCCTCTTCCT
TCTCCTCTCCCCTTCCTTCCCCTCCACCTCCCGCTTCTCTCGCTCCCTCAGCTCTGGCTC
CGCTTTCGCCTCCTCATCTCCGGCGTCAACCTCCGCCCCGCCTGCACCCGTCAAGATCTA
CCTGTACGACCTGCCGGCCAAGTTTACCTACGGCGTCGTCCGTAGCTATAAGGCTGCGCG
TGCGACATCTGGCTCCGCGGACGCCGCTGCTACTCTGCCCGACGAGCAACTGCGGTACCC
GGGACACCAGCACTCGGCGGAGTGGTGGCTCTTCAAGGACCTGCTCCGACGCAGGCCGCA
GGACCGCCCCGTGGCACGCGTGGACGACCCGAGCGACGCCGACCTCTTCTACGTGCCCTT
CTTCTCCTCTCTCAGCCTTGTTGTCAACCCCATCCGCTCTCCGCTGGCAGCAAACGCCTC
TGGGGCGGGGACAGCGTACAGCGACGAGGCCTTGCAAGAGGAGTTGCTAGAGTGGCTGGA
GCGGCAACTTTACTGGCAGCGCCACAGGGGGAGGGATCACGTTTTCATCTGCCAGGATCC
CAATGCCCTTTACAGGGTGGTCGATCGGATCAGCAATGCCGTACTCCTGGTTTCTGATTT
CGGCAGGTTGCGCAGCGACCAGGCATCTCTCGTCAAGGATGTCATCCTGCCCTACTCACA
TCGAATCAACTCCTTCAAGGGTGAGGTCGGGGTGGATGGTCGCCCCTCTTTGCTGTTCTT
CATGGGCAATAGGTACCGCAAGGAGGGAGGGAAGGTTCGTGATGCACTTTTTCAGATTCT
TGAAAACGAGGATGATGTAACCATAAAACATGGAACACAATCGAGGGAGAGTCGGCGTGA
AGCTACACAAGGAATGCACTCATCTAAATTTTGCCTGCATCCTGCCGGAGATACTCCCTC
AGCATGCAGATTATTTGATGCACTTGTCAGTCTGTGTGTTCCTGTTATAGCCAGTGATTA
CATTGAACTTCCATTCGAAGATATTATAGACTACAATAAAATATCAATATTTGTTGGGAC
AAGCAAAGCAGTACAGCCTGGATACTTAACTTCAACTCTTCGAAGAATCAGTTCAGAGAG
GATTCTGGAGTACCAGAGGGAAATAAAAAAGGTCAGACATTACTTTGAGTACGAGGATCC
GAATGGACCAGTGAATGAGATTTGGCGCCAAGTATCCCTTAAAGCACCACTGATAAAGTT
GTTGACTAACCGCGACAAACGGTTGCTTGAAAGAGGCACCAATGGAACAGATTGTTCGTG
CATCTGCTCTACAACTCCAACTGACATAACTGCGGCCAGTTAAACAAGATGGAACTCATC
GGCCTACAAGCTCTGTGCCTATTTCCTGTGATCACATTGCCTGAATTTTTTAGGTTGTAC
AGTTCCATGTAAAACGAGATTACCAGCCACTATTTTTGAACAGTAAATTTACTAATTACC
ACAATCCTTGAGTTTTTACTAGATTTGTATAGGAGGAGCGGATAGTCAGGAACCTTACAG
TGCCCTTTTTGTATTGTAAGTTACATTAGCTATTTTTTGTTGTCGGCAGTTCGCTGCCCT
AGTTTTTCGACCTACATAAGCATCAATCCCCGTGCCAGTGCGTGGACCAA