Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d021804_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:7:163311408:163314632:1 gene:Zm00001d021804 gene_biotype:protein_coding transcript_biotype:protein_coding description:Internal alternative NAD(P)H-ubiquinone oxidoreductase A1 mitochondrial
Sequence

ATGGCGGCGGTGTGGTCTAGGATCGGGAGGGGAGCGCAGCTGTCGCTGTCGCTGTCCCTG
TCGAGGACCTTCTACGACGGCGCGTCGGCGGCTTCCACGCTGCGCAGTGCTGCCGCGCTG
TCCCGCGCCCGGGGCCAGCACGCGTCGTCGCTCCACAGCCTCGCGGGAAGGTCCGCCGGC
CACCTCCTCCAGCCGCCGAGCAGGGGCATCGTGACCACGCCCGCGAGGCTTCACCCGGCG
TCGTCCGCGGCAGTGGTGGCAGAGCTCTCGGACGCGGAGGCGAGGGAGTCCGAGGCCGTG
GCGGCGCCGCCTCGCCAGATGCCGAGCCTCGGCCCGACGCGGCCCGGGGAGAAGCCCCGC
GTCGTGGTGCTGGGCACCGGGTGGGCGGCGTGCCGGCTGCTCAAGGACGTGGACACGCGC
GCCTACGACGTCGTGTGCGTGTCCCCCCGGAACCACATGGTGTTCACGCCGCTGCTGGCG
TCCACGTGCGTCGGCACGCTCGAGTTCCGCTCCGTCGTCGAGCCCGTCAGCCGCATCCAG
TCGGCGCTCGCCACCCGCCCCGGCTCCTACTTCTTCCTCGCCTCCTGCACCGGCGTCGAC
ACCAAGGCGCACGAGGTGTACTGCGAGGCCGCGTCCAGCGACGGACAGCTGCCCTGCCAC
CCGTACCGGTTCAAGGTCGCCTACGACAAGCTGGTGATCGCGAGCGGCGCCGAGCCGCTC
ACCTTCAACATCAAGGGTGTCCAGGAGCATGCCATCTTCCTCCGCGAGGTGAGCCACGCG
CAGGAGATCCGCAGGAAGCTGCTCGCTAATCTCATGCTGGCCGAGAATCCAGGCTTGTCT
GCGGAAGAGAAGGAGCGGCTCCTGCACTGCGTGGTGGTCGGCGGAGGACCCACCGGCGTC
GAGTTCAGCGGCGAGCTCAGCGACTTCATCACACGCGACGTGCGCCAGAGGTACGCGCAC
GTCAAGGACTACGTCAAGATCACCCTCATCGAGGCAAACGAAATCTTGTCATCGTTCGAT
ATCGGACTGCGGCAGTACGCGACGAATCACCTGTCAAAGTATGGAGTTAATCTGGTGCGA
GGCATTGTGAAGGAGGTGAAGGCCACGGAGATCACCCTGAGCGATGGCACCCGCGTGCCC
TACGGCCTGCTGGTCTGGTCCACGGGCGTCGGCCCGTCGGAGTTCGTCAGGTCCCTGCAC
CTTCCCAAGTCCCCAGGCGGGAGGGTCGGCGTGGACGAGTGGCTCCGCGTGCCCACGGCG
CCGGACGTGTTCGCGCTGGGCGACTGCGCGGGTTTCCTGGAGGGGACCGGCAAGCCGGTG
CTCCCGGCGTTGGCCCAGGTCGCGGAGCGGGAGGGCCGGTACCTGGCGCGGCTGCTCGGG
AGGATCGCGGCGCAGAACGGCGGCAAGGCGCACTGCGCCGGCAAGGCCGACCTCGGGGAG
CCGTTCGTGTACAAGCACATCGGCAGCATGGCGTCCGTCGGCCGGTACAAGGCGCTCGTC
GACCTCAGGGAGAACAAGGATGCCAAGGGGGTGTCGATGGCTGGCTTCCTCAGCTGGCTG
ATGTGGCGGTCAGCGTACCTGACGCGGGTGGTGAGCTGGAGGAACAGGTTCTACGTGGCG
GTGAACTGGGGAACGACGCTTGTGTTTGGCAGGGACAACACCAGGATTGGCTGA

Peptide Sequence

PEP ID

Zm00001d021804_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:7:163311408:163314632:1 gene:Zm00001d021804 transcript:Zm00001d021804_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Internal alternative NAD(P)H-ubiquinone oxidoreductase A1 mitochondrial
Sequence

MAAVWSRIGRGAQLSLSLSLSRTFYDGASAASTLRSAAALSRARGQHASSLHSLAGRSAG
HLLQPPSRGIVTTPARLHPASSAAVVAELSDAEARESEAVAAPPRQMPSLGPTRPGEKPR
VVVLGTGWAACRLLKDVDTRAYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVVEPVSRIQ
SALATRPGSYFFLASCTGVDTKAHEVYCEAASSDGQLPCHPYRFKVAYDKLVIASGAEPL
TFNIKGVQEHAIFLREVSHAQEIRRKLLANLMLAENPGLSAEEKERLLHCVVVGGGPTGV
EFSGELSDFITRDVRQRYAHVKDYVKITLIEANEILSSFDIGLRQYATNHLSKYGVNLVR
GIVKEVKATEITLSDGTRVPYGLLVWSTGVGPSEFVRSLHLPKSPGGRVGVDEWLRVPTA
PDVFALGDCAGFLEGTGKPVLPALAQVAEREGRYLARLLGRIAAQNGGKAHCAGKADLGE
PFVYKHIGSMASVGRYKALVDLRENKDAKGVSMAGFLSWLMWRSAYLTRVVSWRNRFYVA
VNWGTTLVFGRDNTRIG

Transcript Sequence

Transcript ID

Zm00001d021804_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:163311408:163314632:1 gene:Zm00001d021804 gene_biotype:protein_coding transcript_biotype:protein_coding description:Internal alternative NAD(P)H-ubiquinone oxidoreductase A1 mitochondrial
Sequence

GGCCGTGGCTCAATATCTCCAGATTTTCCCGAAACCCTTGTCCCATTTCCTTCCATATTA
TTTACATATACCCTCTGTCCTTGTCGCGGCGATGCTCTGTTGGTAATCTTGGAGGCGATC
GATGTCGACAGGCCGTGACGTCGTCCGATGATTCTCCCTCTCCCTCGTCGCCTTCGTTGT
CATCTTCGCACGTTCGTTTGGTTGGACACTTGGACTTCCCTCGCACGCTTGAAGGTTGAA
GCAGCTGCTCCCGCAGATGGCGGCGGTGTGGTCTAGGATCGGGAGGGGAGCGCAGCTGTC
GCTGTCGCTGTCCCTGTCGAGGACCTTCTACGACGGCGCGTCGGCGGCTTCCACGCTGCG
CAGTGCTGCCGCGCTGTCCCGCGCCCGGGGCCAGCACGCGTCGTCGCTCCACAGCCTCGC
GGGAAGGTCCGCCGGCCACCTCCTCCAGCCGCCGAGCAGGGGCATCGTGACCACGCCCGC
GAGGCTTCACCCGGCGTCGTCCGCGGCAGTGGTGGCAGAGCTCTCGGACGCGGAGGCGAG
GGAGTCCGAGGCCGTGGCGGCGCCGCCTCGCCAGATGCCGAGCCTCGGCCCGACGCGGCC
CGGGGAGAAGCCCCGCGTCGTGGTGCTGGGCACCGGGTGGGCGGCGTGCCGGCTGCTCAA
GGACGTGGACACGCGCGCCTACGACGTCGTGTGCGTGTCCCCCCGGAACCACATGGTGTT
CACGCCGCTGCTGGCGTCCACGTGCGTCGGCACGCTCGAGTTCCGCTCCGTCGTCGAGCC
CGTCAGCCGCATCCAGTCGGCGCTCGCCACCCGCCCCGGCTCCTACTTCTTCCTCGCCTC
CTGCACCGGCGTCGACACCAAGGCGCACGAGGTGTACTGCGAGGCCGCGTCCAGCGACGG
ACAGCTGCCCTGCCACCCGTACCGGTTCAAGGTCGCCTACGACAAGCTGGTGATCGCGAG
CGGCGCCGAGCCGCTCACCTTCAACATCAAGGGTGTCCAGGAGCATGCCATCTTCCTCCG
CGAGGTGAGCCACGCGCAGGAGATCCGCAGGAAGCTGCTCGCTAATCTCATGCTGGCCGA
GAATCCAGGCTTGTCTGCGGAAGAGAAGGAGCGGCTCCTGCACTGCGTGGTGGTCGGCGG
AGGACCCACCGGCGTCGAGTTCAGCGGCGAGCTCAGCGACTTCATCACACGCGACGTGCG
CCAGAGGTACGCGCACGTCAAGGACTACGTCAAGATCACCCTCATCGAGGCAAACGAAAT
CTTGTCATCGTTCGATATCGGACTGCGGCAGTACGCGACGAATCACCTGTCAAAGTATGG
AGTTAATCTGGTGCGAGGCATTGTGAAGGAGGTGAAGGCCACGGAGATCACCCTGAGCGA
TGGCACCCGCGTGCCCTACGGCCTGCTGGTCTGGTCCACGGGCGTCGGCCCGTCGGAGTT
CGTCAGGTCCCTGCACCTTCCCAAGTCCCCAGGCGGGAGGGTCGGCGTGGACGAGTGGCT
CCGCGTGCCCACGGCGCCGGACGTGTTCGCGCTGGGCGACTGCGCGGGTTTCCTGGAGGG
GACCGGCAAGCCGGTGCTCCCGGCGTTGGCCCAGGTCGCGGAGCGGGAGGGCCGGTACCT
GGCGCGGCTGCTCGGGAGGATCGCGGCGCAGAACGGCGGCAAGGCGCACTGCGCCGGCAA
GGCCGACCTCGGGGAGCCGTTCGTGTACAAGCACATCGGCAGCATGGCGTCCGTCGGCCG
GTACAAGGCGCTCGTCGACCTCAGGGAGAACAAGGATGCCAAGGGGGTGTCGATGGCTGG
CTTCCTCAGCTGGCTGATGTGGCGGTCAGCGTACCTGACGCGGGTGGTGAGCTGGAGGAA
CAGGTTCTACGTGGCGGTGAACTGGGGAACGACGCTTGTGTTTGGCAGGGACAACACCAG
GATTGGCTGACGACGTTTAGCAGCTTAAGCTGGTGTTCCTCTGGATAGTACCACGGGAAC
AAGAGACTGCCTGTCATTGTTGTTCTTTTGTTTGTAATTCAACACGTGCTGAGAGATTTC
TATTGGCTTCCATACTCTCTCTCTCTCTATTGGTCAGATGAAGTCATGAAGTGCAGACTT
GCAAATGTAAGTCACCAGTTTCTTTTTTAAAAAAAAGATT