Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d021787_T004
CDS Infomation	cds chromosome:B73_RefGen_v4:7:162992886:162997446:1 gene:Zm00001d021787 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sphingosine kinase 1
Sequence	ATGCAAGAAACCAAGCATCGGCTTCATGCTCAAGAGATCGCACGTTCACTTGATCTTAGG AAGTATGATGGCATCATTTGTGTCAGTGGAGATGGTGTGATGGTAGAGGTTGTCAATGGT CTCCTGCAGAGGGAGGACTGGGAAACAGCAATAAAAGTGCCCCTTGGGATCGTTCCGGCA GGTACTGGAAATGGAATGGCACGATCTCTATTGCATGCTGCTGGTGAACCATTCTCTGTA TCTAATGCTGTGTTTGCAATCATCAGAGGTCATAAACGTGCACTTGATGTTACTTCTGTT GTGCAGGGAAACACAAGGTTCTTTAGTGTCCTGATGCTTACATGGGGTCTGGTGGCTGAT GTTGATATTGAATCGGAGAAGTATAGGTGGATGGGAAGTGCTCGCCTTGAATTTTATCTC CTACTCCGCATGCTGAACCTGCGACGGTACAATGGGCGCATCCTTTTTGTTCCAGCACCA GGATATGAAGAAGTTGGTGATCCCGTGGAACAAACTACCGGTCATGAAACAAATGGGGTT AGCGGGGCAACTGACAAAAATGGTGAAACGTGCGGCTATGTCGGCCCGTCGATCAAAGAA GCCGATCTTAGATGGAGATCGCTGAACGGTCCGTTCGTTTCAGTCTGGCTCGGCAATGTT CCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGTTTGCGGATGGCTACTTG GATGCTGCTATAATCAAGGACTGCCCGCGGTGGGATGTTCTGGGGCTCGTGCTCCAGATG AAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAGGTGAAGGCGATCCGG ATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAGGGCGGTATCATCGACTCGGACGGG GAGGTGCTCGCGAGGGGCGACGGGTCCCACTCCCGCGCCGGCGACGAGCCGGGGCACCTG ATGGCGTACGGCCCGCCCATCCAGCTGACGGTGGACCAGGGGCTGGCCACCATCTTCTCC CCGAGATGA

Peptide Sequence

PEP ID	Zm00001d021787_P004
PEP Infomation	pep chromosome:B73_RefGen_v4:7:162992886:162997446:1 gene:Zm00001d021787 transcript:Zm00001d021787_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sphingosine kinase 1
Sequence	MQETKHRLHAQEIARSLDLRKYDGIICVSGDGVMVEVVNGLLQREDWETAIKVPLGIVPA GTGNGMARSLLHAAGEPFSVSNAVFAIIRGHKRALDVTSVVQGNTRFFSVLMLTWGLVAD VDIESEKYRWMGSARLEFYLLLRMLNLRRYNGRILFVPAPGYEEVGDPVEQTTGHETNGV SGATDKNGETCGYVGPSIKEADLRWRSLNGPFVSVWLGNVPFASEDAMAAPKAEFADGYL DAAIIKDCPRWDVLGLVLQMKDGAYVNSPCVEYFKVKAIRIEPGLRVGSSTKGGIIDSDG EVLARGDGSHSRAGDEPGHLMAYGPPIQLTVDQGLATIFSPR

Transcript Sequence

Transcript ID	Zm00001d021787_T004
Transcript Infomation	cdna chromosome:B73_RefGen_v4:7:162992886:162997446:1 gene:Zm00001d021787 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sphingosine kinase 1
Sequence	CTTGTAATTCGATTATTTCGATCCTCCTCTATTTTTTTTTAAAAAAACTCTCCTACATCA TGGGAATCGTGCATGGCTCGTGATTTGATCGATGTGATCACTCAGCGATTGTTCTTTAGT TCAATCCGTGGCTGGAGTTTTGGCATTGCCTGGTGGACGCCTGGTTCGTGATCGGGTAGG CGGCGGCCGCGGTAGTTGCGTGGCGCACTTGAGTAGTTGGTTGACTGGATTCATAGCTGG GAGAGCTAAAAAATTCTGCTCCTGATAGTAAGGGGGGAAATCAAAGCAAAACCAGAAGAG AATATCTAGGTTGATTCGATTCAACAATAATAGTTTGAAGCAATTGGTTCTAGATTGCAA CGGTCATAGTCATAGGCGTGCACAGATCTTTCTTAATGCGTGAAATCGTGCGGTTGAATA GCTGTTCTTCTGGGCATACCCTGGGTCAAAGCGTCAACCGTCAAATGTACAAATGCTAGT AGTATGCTAGGTGCCAAGAGTCCTACAGAGTTTGAAATTCTCCATGGATTCTTTCTTCAG TATCTGGTCTACTCAAATTTCCACGGTTGGCTTCAGATGGGCATGTTGCTGATGGTGTGC ATCCCACAAAGTTTGCATTCCAATTATTATAACCCTGAGCAAATCGGAATCGTGTACGTC TGTCTAAATGGTGCCTGTTCATTTGGTGCAACGCAGCAGTGATACTTTGCAGTAGTAGTA ATGTTATGCATATTCTGTAGGAACAATTGGATCTATACCATTAAAAGATCCAAACTTTAG ATATATACCATGGACCTCACATGTCATTGACTCATGTGGACCCACATGTAAGTGAGATAG TAATGGTATGGATCCAAAGTGGTGATCTTTTAATGGTATGGATCCAAATTTCCCTCTTCT ATACAACTTCCTTTTAAAATCACCCTTGAGTGTTGCATTAGCTATCATACTTGTAGGATG CAAGTGTGTACTCAACGGTGTTTTGTGTGTCACCTATCTTGGTTCATTTCTCCCCTTAAA TTAATTATGTGGCATGCCATTCTAGTTCATTTTATCAAGTTCTGGGTTGATCCAATGACT TAGAACATGGGATGCTTGCATCCCTAGCTATCAACGCAAAATATCGGAGCTGGCCTTTTT TGCTCAGTTATTCATCATCGATAGTGCTGATCTAGTGCTCATAATTCTGTTCCATTTCTA GTTGGTACTAGCTCATGCTTCTCTAACTCCTTCAGAAAAGCATAGTAGATTAACAACTGA ATTTGGAACACCAGTTTTACCTACTCATGGCCCCTTAGGTATTCCTCCTGCAATATTGCC ACAGGCCGGCCAAAGAAATTGTTCATTATAGTGAACCCTTATGGTGGAAAGAGAAGTGGA AGGAGTATTTTCCAGAATGAAGTCCTCCCCCTCATTGAAGCTTCTGGCGTGCTTTATACG ATGCAAGAAACCAAGCATCGGCTTCATGCTCAAGAGATCGCACGTTCACTTGATCTTAGG AAGTATGATGGCATCATTTGTGTCAGTGGAGATGGTGTGATGGTAGAGGTTGTCAATGGT CTCCTGCAGAGGGAGGACTGGGAAACAGCAATAAAAGTGCCCCTTGGGATCGTTCCGGCA GGTACTGGAAATGGAATGGCACGATCTCTATTGCATGCTGCTGGTGAACCATTCTCTGTA TCTAATGCTGTGTTTGCAATCATCAGAGGTCATAAACGTGCACTTGATGTTACTTCTGTT GTGCAGGGAAACACAAGGTTCTTTAGTGTCCTGATGCTTACATGGGGTCTGGTGGCTGAT GTTGATATTGAATCGGAGAAGTATAGGTGGATGGGAAGTGCTCGCCTTGAATTTTATCTC CTACTCCGCATGCTGAACCTGCGACGGTACAATGGGCGCATCCTTTTTGTTCCAGCACCA GGATATGAAGAAGTTGGTGATCCCGTGGAACAAACTACCGGTCATGAAACAAATGGGGTT AGCGGGGCAACTGACAAAAATGGTGAAACGTGCGGCTATGTCGGCCCGTCGATCAAAGAA GCCGATCTTAGATGGAGATCGCTGAACGGTCCGTTCGTTTCAGTCTGGCTCGGCAATGTT CCTTTCGCTAGCGAAGATGCCATGGCAGCACCAAAAGCAGAGTTTGCGGATGGCTACTTG GATGCTGCTATAATCAAGGACTGCCCGCGGTGGGATGTTCTGGGGCTCGTGCTCCAGATG AAGGACGGCGCCTACGTGAACTCGCCGTGCGTGGAGTATTTCAAGGTGAAGGCGATCCGG ATCGAGCCGGGCCTGCGCGTGGGCAGCAGCACCAAGGGCGGTATCATCGACTCGGACGGG GAGGTGCTCGCGAGGGGCGACGGGTCCCACTCCCGCGCCGGCGACGAGCCGGGGCACCTG ATGGCGTACGGCCCGCCCATCCAGCTGACGGTGGACCAGGGGCTGGCCACCATCTTCTCC CCGAGATGACGATTCTTCTATCTGTTCTCCACCGCCTGCGAGGACTTTGCTTCGTTAGCC CTGCCATTTTCTCGAGTAGAACCATGTGACTCTATATGTAAATATTAGTCACACGGTCAC ACCCCACTCCAGTGGATGAGCGATGAGCCAAAACACAAGAGGGACAGATCCTTTATCTCC GTCAAGAGATTGTTTTCTTTTCACGGCCACAGCCCACATGGCCGCCGCTTTTAGTGTTAG CGTGAGAAAATGACAAGTGGGCTGTGGGCAGCTCCTATTCTTTTTTTCACCTTGTGTGTG TTGTTGATTGTCCCTTGACAAACAGTGGACTGTTTTCCTGCAAAATTGGTGTTT