Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d021607_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:7:157927470:157934041:1 gene:Zm00001d021607 gene_biotype:protein_coding transcript_biotype:protein_coding description:Helicase protein with RING/U-box domain
Sequence

ATGACGCGCCGAGGATCCAGTAGCGGCCGCCGGCGCCGCCGCGACCAGGAGGATGAGGAC
GACCTCCCCTCTGACGACACCTCCGACACCGATTTCGTCGCCGACTCCGGGGACGCGGTG
GAGAACGACGACAGCGACGAGGAGTTCGCGCCCGATAAGGACACCCCGCCCGCGCCCGCG
GTGCCCGAGGCGGCCCTGCCGCCGCCGGTGCCGATCCGGATTAAGAATCAGGCGCGGAAC
AGGAGGGAGAAGAGGAGGCGAGGTAAGAAGGCGAGGAGGGACGCGCCGCCCCTGCCATGG
GAAGAGTGGCAGGTGGCAAACGACAGTTGGCTCGACGAGCGGAACGCAGCCGACGGGGGC
GTCGAGGCCACGGACGCCACGGTGGCGGCCGTGCCGACCGCGGACCCGGCCCCGGAGGTG
GTGCTCCGATTGCTGCGTTTCCAGAAGGAGTGGCTCGCTTGGGCGCTCGCGCAGGAGGCG
TCCGTCACGCGGGGCGGCATCCTCGCCGACGAGATGGGGATGGGGAAGACCATCCAGGCT
ATCTCGCTCGTCCTAACCGCGCGCCGCCTCCGGCCCCCGGACCATCACTCCGCCGCCTCC
TCGTCCAACTCCTCGGTGGGCCGCACCAAGCCCCAGGTCGGGTGCACGCTGGTCGTCTGC
CCTGTGGTGGCCGTCATCCAGTGGACTGAGGAGATCGAACGCCACACTGCTAGTGGCAGC
GTGCGCGTGCTCATCTACCACGGTGCCAAGCGTGTCACTCAGAGTTTCGATTTCAACAGC
TATGACTTTGTTATCACCACCTACTCTACCATTGAGGCGGACTACCGGAAGCACATCATG
CCGCCCAAGACTCGGTGCCAATACTGCAATAAATTGTTCTACCCCAACAAGATGAAGGTG
CACTTGATGTATCACTGTGGGCCTAATGCTAAACGCACAGAAGCTCAGGCTAAGCAGCAG
AGCAAGAGGAAGTGGGACAGCAGCAAGGAAAAGGTGAAGGAGAAGAGGAGGGTTCATAAG
AAGGGTGATGAGGTGAATAAGGATTTTCAAGAGTTGGCTGATGAACTGGGCAGACAGTTA
AGGGGCCAATCTCCTCTGCATTCTGTGCGGTGGGAGCGTGTTATCCTGGATGAGGCTCAC
TTCATAAAAGATAGACGATGTAATACTGCACGGGCTGTTTTTGCATTGGAGTCAGAATGC
AAGTGGGCTCTGAGTGGAACACCTTTGCAGAACCGTGTTGGAGAACTTTACTCTCTTATT
CGGTTTTTGCAAATCTTCCCCTACTCATACTATTTCTGCAAGGACTGTAGCTGTGAGATA
CTAGATACCAGTATGAAGAAACAATGCGACTGTGGTCACTCATCTGTTAGGCACTTTTGC
TGGTGGAATAAGTACATATCAACACCAATACAGTATGGGTCAACAAGTTTCGAAGGAAAA
AGAGCCATGACTCTTCTGAAGGAAAAAGTTCTGAAAGGCATAGTGTTAAGGCGCACAAAG
AAAGGCCGAGCAGCAGATCTTGCTCTTCCACCAAAGATTGTGACATTGAGGCGGGACTCT
TTTGATAAAAACGAAATGGAATTCTATGAAGCTTTGTACACTCAGAGTGTCACACAATTT
GATGCATATGTAGATGCTGGAACACTGATGAATAACTACGCTCATATCTTCGATCTTCTC
ACAAGGTTGAGACAGGCTGTTGATCATCCCTATCTTGTAGCATATTCTAAAACAGCAGGA
CATCCTGAAGGAATGAAGAATGAAGGAAACGAGTCCATGGAGAGCCAATGTGGTATATGT
CATAATTTGGCTGAAGATGTTGTGGTTACCTCTTGTGATCATGCATTCTGCAAGACTTGT
TTGATAGACTACTCTGCAGCTTTGGGGAATGTTTCATGTCCATCCTGTTCAATACCTCTC
ACCGTGGACTTAACAGCACAAAATTCAGTTGGAAAAGTAACTCGAAGTGTCAAGGGTCGC
AAATGTTCAGGAATATTGAGCAGACTACCAAGCCTTGTGGATTTTAAGACGAGTACAAAA
ATTGATGCCTTGAGGGAGGAGATAAGAAACATGATTGAGCACGATGGTTCTGCCAAAGGG
ATTGTCTTCAGCCAGTTCACATCATTCTTGGATTTGATTCAGTTTTCCTTGGAGAGGTCC
GGCATTAAGTGTGTCCAGTTGAATGGAGCCATGAACATTACCGAAAAGGGAAGAGCCATA
GACACCTTCACCCATGATGCAGACTGCAGGGTCTTCTTGATGAGCTTAAAAGCTGGAGGA
GTCGCTCTGAATCTCACTGTAGCATCTCATGTGTTCCTGATGGACCCTTGGTGGAATCCA
GCGGTCGAGAACCAAGCGCAGGACCGTATCCACCGAATTGGGCAGTTCAAGCCAATCAAG
GAGCACTAG

Peptide Sequence

PEP ID

Zm00001d021607_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:7:157927470:157934041:1 gene:Zm00001d021607 transcript:Zm00001d021607_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Helicase protein with RING/U-box domain
Sequence

MTRRGSSSGRRRRRDQEDEDDLPSDDTSDTDFVADSGDAVENDDSDEEFAPDKDTPPAPA
VPEAALPPPVPIRIKNQARNRREKRRRGKKARRDAPPLPWEEWQVANDSWLDERNAADGG
VEATDATVAAVPTADPAPEVVLRLLRFQKEWLAWALAQEASVTRGGILADEMGMGKTIQA
ISLVLTARRLRPPDHHSAASSSNSSVGRTKPQVGCTLVVCPVVAVIQWTEEIERHTASGS
VRVLIYHGAKRVTQSFDFNSYDFVITTYSTIEADYRKHIMPPKTRCQYCNKLFYPNKMKV
HLMYHCGPNAKRTEAQAKQQSKRKWDSSKEKVKEKRRVHKKGDEVNKDFQELADELGRQL
RGQSPLHSVRWERVILDEAHFIKDRRCNTARAVFALESECKWALSGTPLQNRVGELYSLI
RFLQIFPYSYYFCKDCSCEILDTSMKKQCDCGHSSVRHFCWWNKYISTPIQYGSTSFEGK
RAMTLLKEKVLKGIVLRRTKKGRAADLALPPKIVTLRRDSFDKNEMEFYEALYTQSVTQF
DAYVDAGTLMNNYAHIFDLLTRLRQAVDHPYLVAYSKTAGHPEGMKNEGNESMESQCGIC
HNLAEDVVVTSCDHAFCKTCLIDYSAALGNVSCPSCSIPLTVDLTAQNSVGKVTRSVKGR
KCSGILSRLPSLVDFKTSTKIDALREEIRNMIEHDGSAKGIVFSQFTSFLDLIQFSLERS
GIKCVQLNGAMNITEKGRAIDTFTHDADCRVFLMSLKAGGVALNLTVASHVFLMDPWWNP
AVENQAQDRIHRIGQFKPIKEH

Transcript Sequence

Transcript ID

Zm00001d021607_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:157927470:157934041:1 gene:Zm00001d021607 gene_biotype:protein_coding transcript_biotype:protein_coding description:Helicase protein with RING/U-box domain
Sequence

AGTCCTAATCACTCCACCCACTCGGCCGCTTCTCCTTTCCTCCCGCGCCACCGCCTTCGC
GCCGCCATGACGCGCCGAGGATCCAGTAGCGGCCGCCGGCGCCGCCGCGACCAGGAGGAT
GAGGACGACCTCCCCTCTGACGACACCTCCGACACCGATTTCGTCGCCGACTCCGGGGAC
GCGGTGGAGAACGACGACAGCGACGAGGAGTTCGCGCCCGATAAGGACACCCCGCCCGCG
CCCGCGGTGCCCGAGGCGGCCCTGCCGCCGCCGGTGCCGATCCGGATTAAGAATCAGGCG
CGGAACAGGAGGGAGAAGAGGAGGCGAGGTAAGAAGGCGAGGAGGGACGCGCCGCCCCTG
CCATGGGAAGAGTGGCAGGTGGCAAACGACAGTTGGCTCGACGAGCGGAACGCAGCCGAC
GGGGGCGTCGAGGCCACGGACGCCACGGTGGCGGCCGTGCCGACCGCGGACCCGGCCCCG
GAGGTGGTGCTCCGATTGCTGCGTTTCCAGAAGGAGTGGCTCGCTTGGGCGCTCGCGCAG
GAGGCGTCCGTCACGCGGGGCGGCATCCTCGCCGACGAGATGGGGATGGGGAAGACCATC
CAGGCTATCTCGCTCGTCCTAACCGCGCGCCGCCTCCGGCCCCCGGACCATCACTCCGCC
GCCTCCTCGTCCAACTCCTCGGTGGGCCGCACCAAGCCCCAGGTCGGGTGCACGCTGGTC
GTCTGCCCTGTGGTGGCCGTCATCCAGTGGACTGAGGAGATCGAACGCCACACTGCTAGT
GGCAGCGTGCGCGTGCTCATCTACCACGGTGCCAAGCGTGTCACTCAGAGTTTCGATTTC
AACAGCTATGACTTTGTTATCACCACCTACTCTACCATTGAGGCGGACTACCGGAAGCAC
ATCATGCCGCCCAAGACTCGGTGCCAATACTGCAATAAATTGTTCTACCCCAACAAGATG
AAGGTGCACTTGATGTATCACTGTGGGCCTAATGCTAAACGCACAGAAGCTCAGGCTAAG
CAGCAGAGCAAGAGGAAGTGGGACAGCAGCAAGGAAAAGGTGAAGGAGAAGAGGAGGGTT
CATAAGAAGGGTGATGAGGTGAATAAGGATTTTCAAGAGTTGGCTGATGAACTGGGCAGA
CAGTTAAGGGGCCAATCTCCTCTGCATTCTGTGCGGTGGGAGCGTGTTATCCTGGATGAG
GCTCACTTCATAAAAGATAGACGATGTAATACTGCACGGGCTGTTTTTGCATTGGAGTCA
GAATGCAAGTGGGCTCTGAGTGGAACACCTTTGCAGAACCGTGTTGGAGAACTTTACTCT
CTTATTCGGTTTTTGCAAATCTTCCCCTACTCATACTATTTCTGCAAGGACTGTAGCTGT
GAGATACTAGATACCAGTATGAAGAAACAATGCGACTGTGGTCACTCATCTGTTAGGCAC
TTTTGCTGGTGGAATAAGTACATATCAACACCAATACAGTATGGGTCAACAAGTTTCGAA
GGAAAAAGAGCCATGACTCTTCTGAAGGAAAAAGTTCTGAAAGGCATAGTGTTAAGGCGC
ACAAAGAAAGGCCGAGCAGCAGATCTTGCTCTTCCACCAAAGATTGTGACATTGAGGCGG
GACTCTTTTGATAAAAACGAAATGGAATTCTATGAAGCTTTGTACACTCAGAGTGTCACA
CAATTTGATGCATATGTAGATGCTGGAACACTGATGAATAACTACGCTCATATCTTCGAT
CTTCTCACAAGGTTGAGACAGGCTGTTGATCATCCCTATCTTGTAGCATATTCTAAAACA
GCAGGACATCCTGAAGGAATGAAGAATGAAGGAAACGAGTCCATGGAGAGCCAATGTGGT
ATATGTCATAATTTGGCTGAAGATGTTGTGGTTACCTCTTGTGATCATGCATTCTGCAAG
ACTTGTTTGATAGACTACTCTGCAGCTTTGGGGAATGTTTCATGTCCATCCTGTTCAATA
CCTCTCACCGTGGACTTAACAGCACAAAATTCAGTTGGAAAAGTAACTCGAAGTGTCAAG
GGTCGCAAATGTTCAGGAATATTGAGCAGACTACCAAGCCTTGTGGATTTTAAGACGAGT
ACAAAAATTGATGCCTTGAGGGAGGAGATAAGAAACATGATTGAGCACGATGGTTCTGCC
AAAGGGATTGTCTTCAGCCAGTTCACATCATTCTTGGATTTGATTCAGTTTTCCTTGGAG
AGGTCCGGCATTAAGTGTGTCCAGTTGAATGGAGCCATGAACATTACCGAAAAGGGAAGA
GCCATAGACACCTTCACCCATGATGCAGACTGCAGGGTCTTCTTGATGAGCTTAAAAGCT
GGAGGAGTCGCTCTGAATCTCACTGTAGCATCTCATGTGTTCCTGATGGACCCTTGGTGG
AATCCAGCGGTCGAGAACCAAGCGCAGGACCGTATCCACCGAATTGGGCAGTTCAAGCCA
ATCAAGGAGCACTAGGTTTGTGATAAAGGACACGGTTGAAGAGCGCATACTGCAACTGCA
ACAGAAGAAGCAGCTGGTGTTTGAAGGCACCGTGGGGGACTCGCCGGATGCCATGTCGAA
GCTTACAGAGGCGGACCTCAAGTTTCTGTTTCAGATCTAAATGCTGACGTAGTTAAGCAT
GAGTAGGGAGGGCCAGGCTATGCTAGGACTAGGAGCACTGACTTGTTGGAAGTTGGAACC
CTGACGCTGCCATAACACCAGGACGGACGGGGTCGGCGGTGCGTAGATCGACTGCTGCTG
TGCCTGTTGGAACTGATGTACTTTTGCAGTGTGTGTAACATCGATGGCAGCGACTAGCGA
GGCTTTCCGTTGGAGTAGCCCGTTTG