Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d021599_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:7:157782317:157788323:1 gene:Zm00001d021599 gene_biotype:protein_coding transcript_biotype:protein_coding description:SKU5 similar 4
Sequence

ATGGCAGGCGGCAATGCCGGTGGCGCCGCTCGAGTCCTGTTCTCCATCCTCGGCCTGGCG
CTGGCGCTGCCGCTGCTCGTGGCCGGCGACGACCCGTACCGGTTCTTCACGTGGACGGTG
ACCTACGGCGACATCTACCCGCTGGGCGTCAAGCAGCAGGGGATCCTGATCAACAACCAG
TTCCCGGGGCCGCAGATCGAGGCCGTCACCAACGACAACCTCATCATCAACGTCTTCAAC
AAGCTCAACGAGCCGTTCCTCCTCTCCTGGAGCGGGCTCCAGCAGCGGCGGAACTCGTTC
GAGGACGGCGTGGCCGGGACGACGTGCCCGATCCCGCCGGGCTCCAACTTCACCTACATC
ATGCAGGCCAAGGACCAGATCGGCACCTACTACTACTTCCCATCGCTGGCCTTCCACAAG
GCCGCCGGCGGGTTCGGCGGCATCCGCGTGCTCAGCCGCCCGCAGATCCCCGTCCCGTTC
CCGCCGCCGGCCGCCGACTACACCGTCCTCATCGGCGACTGGTACAAGGCCAACCACACC
GACTTGCGGTACGTGCTCGACAGCGGCGTGGCGCTCGGGTTCCCTGACGGGCTGCTCATC
AACGGCCGGGGCCTGAATGGCTACACCTTCAACGTTCAGCCCGGCCGGACGTACCGGTTC
CGGATCACCAACGTGGGGCTGGCCACGTCCCTCAACATCCGGTTCCAGGGGCACACCATG
AAGCTGGTGGAGGTGGAGGGCTCGCACACCATGCAGACCACCTACTCGTCCCTGGACGTG
CACCTGGGCCAGTCCTACTCCGTGCTGCTCACCGCCGACCAGCCGGGCTACGACTACGCC
GTCGTCGTCTCCACGCGCTTCACGAGCCGGATCATCTCCACCACGGCGGTCCTGCGCTAC
GCCAACTCCGCCGGCAGGGCGCCGGGTCCCCTCCCCGGTGGCCCCACCATCCAGATCGAC
TGGTCGCTCAACCAGGCCCGCTCGGTCCGGTGGAACCTGACGGCCAGCGGGCCGCGGCCC
AACCCGCAGGGGTCGTACCACTACGGCCTGGTGCCGGTGACCCGGACCATCCGCCTGGCC
AACTCGGCGGCGACCATCGGCGGGAAGCGGCGCTACGCGGTGAACGGCGCGTCGTACGTG
GGCCCCGACACCCCGCTCAAGGTCGCAGACTACTACAAGATCGGCGGCGTCTTCTCCGTG
GGCACCATCGCCGACAGCCCCCCCGCCTACGGCGGCGCCGCCTACCTGCGGACGTCGGTC
ATGGGCGCCAGCTACAGGGACTACGTCGAGGTCGTGTTCGAGAACGGCGAGGACGAGGTG
CAGTCGTGGCACATCGACGGATACGCCTTCTGGGTCGTCGGGATGGATGGAGGGAAATGG
TCGTCGGCAAGCAGGCAGGGCTACAACCTGAGGGACGGCGTTTCGCGGTACACTGTTCAG
GTGTACCCCAGATCGTGGACGGCGATTTACATGCCCCTGGACAACGTGGGCATGTGGAAC
GTCCGGTCGGAGAACTGGGCCAGGCAGTACCTGGGGCAGCAGTTCTACCTCCGCGTCTGG
ACGCCGTCCACGTCGTTGCGCGACGAGTACCCCATCCCCAAGAACGCGCTCCTGTGCGGC
CGGGCGGCCGGACGCCGGACCAGGCCGCTGTGA

Peptide Sequence

PEP ID

Zm00001d021599_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:7:157782317:157788323:1 gene:Zm00001d021599 transcript:Zm00001d021599_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:SKU5 similar 4
Sequence

MAGGNAGGAARVLFSILGLALALPLLVAGDDPYRFFTWTVTYGDIYPLGVKQQGILINNQ
FPGPQIEAVTNDNLIINVFNKLNEPFLLSWSGLQQRRNSFEDGVAGTTCPIPPGSNFTYI
MQAKDQIGTYYYFPSLAFHKAAGGFGGIRVLSRPQIPVPFPPPAADYTVLIGDWYKANHT
DLRYVLDSGVALGFPDGLLINGRGLNGYTFNVQPGRTYRFRITNVGLATSLNIRFQGHTM
KLVEVEGSHTMQTTYSSLDVHLGQSYSVLLTADQPGYDYAVVVSTRFTSRIISTTAVLRY
ANSAGRAPGPLPGGPTIQIDWSLNQARSVRWNLTASGPRPNPQGSYHYGLVPVTRTIRLA
NSAATIGGKRRYAVNGASYVGPDTPLKVADYYKIGGVFSVGTIADSPPAYGGAAYLRTSV
MGASYRDYVEVVFENGEDEVQSWHIDGYAFWVVGMDGGKWSSASRQGYNLRDGVSRYTVQ
VYPRSWTAIYMPLDNVGMWNVRSENWARQYLGQQFYLRVWTPSTSLRDEYPIPKNALLCG
RAAGRRTRPL

Transcript Sequence

Transcript ID

Zm00001d021599_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:157782317:157788323:1 gene:Zm00001d021599 gene_biotype:protein_coding transcript_biotype:protein_coding description:SKU5 similar 4
Sequence

CATCGCACCGGCACCGCTCCTCTCCCGGCCTCCCCTTTCCATCTCCTCCACGAAATCTGC
GCAGCTCACGCTGACGACACCGACCGACCCCGCAGCTGCCCTCTATCTAGCTGCCCTCCC
TCCCATCCAGCAGCCCACCCCCCACCCACCTCGGACCTGCTGCTCCCTCCACTCACCACC
CCCGGCCGAGCGAATTGAAGAAGCTCCCCCTCTGAACTGAAGCAATGGCAGGCGGCAATG
CCGGTGGCGCCGCTCGAGTCCTGTTCTCCATCCTCGGCCTGGCGCTGGCGCTGCCGCTGC
TCGTGGCCGGCGACGACCCGTACCGGTTCTTCACGTGGACGGTGACCTACGGCGACATCT
ACCCGCTGGGCGTCAAGCAGCAGGGGATCCTGATCAACAACCAGTTCCCGGGGCCGCAGA
TCGAGGCCGTCACCAACGACAACCTCATCATCAACGTCTTCAACAAGCTCAACGAGCCGT
TCCTCCTCTCCTGGAGCGGGCTCCAGCAGCGGCGGAACTCGTTCGAGGACGGCGTGGCCG
GGACGACGTGCCCGATCCCGCCGGGCTCCAACTTCACCTACATCATGCAGGCCAAGGACC
AGATCGGCACCTACTACTACTTCCCATCGCTGGCCTTCCACAAGGCCGCCGGCGGGTTCG
GCGGCATCCGCGTGCTCAGCCGCCCGCAGATCCCCGTCCCGTTCCCGCCGCCGGCCGCCG
ACTACACCGTCCTCATCGGCGACTGGTACAAGGCCAACCACACCGACTTGCGGTACGTGC
TCGACAGCGGCGTGGCGCTCGGGTTCCCTGACGGGCTGCTCATCAACGGCCGGGGCCTGA
ATGGCTACACCTTCAACGTTCAGCCCGGCCGGACGTACCGGTTCCGGATCACCAACGTGG
GGCTGGCCACGTCCCTCAACATCCGGTTCCAGGGGCACACCATGAAGCTGGTGGAGGTGG
AGGGCTCGCACACCATGCAGACCACCTACTCGTCCCTGGACGTGCACCTGGGCCAGTCCT
ACTCCGTGCTGCTCACCGCCGACCAGCCGGGCTACGACTACGCCGTCGTCGTCTCCACGC
GCTTCACGAGCCGGATCATCTCCACCACGGCGGTCCTGCGCTACGCCAACTCCGCCGGCA
GGGCGCCGGGTCCCCTCCCCGGTGGCCCCACCATCCAGATCGACTGGTCGCTCAACCAGG
CCCGCTCGGTCCGGTGGAACCTGACGGCCAGCGGGCCGCGGCCCAACCCGCAGGGGTCGT
ACCACTACGGCCTGGTGCCGGTGACCCGGACCATCCGCCTGGCCAACTCGGCGGCGACCA
TCGGCGGGAAGCGGCGCTACGCGGTGAACGGCGCGTCGTACGTGGGCCCCGACACCCCGC
TCAAGGTCGCAGACTACTACAAGATCGGCGGCGTCTTCTCCGTGGGCACCATCGCCGACA
GCCCCCCCGCCTACGGCGGCGCCGCCTACCTGCGGACGTCGGTCATGGGCGCCAGCTACA
GGGACTACGTCGAGGTCGTGTTCGAGAACGGCGAGGACGAGGTGCAGTCGTGGCACATCG
ACGGATACGCCTTCTGGGTCGTCGGGATGGATGGAGGGAAATGGTCGTCGGCAAGCAGGC
AGGGCTACAACCTGAGGGACGGCGTTTCGCGGTACACTGTTCAGGTGTACCCCAGATCGT
GGACGGCGATTTACATGCCCCTGGACAACGTGGGCATGTGGAACGTCCGGTCGGAGAACT
GGGCCAGGCAGTACCTGGGGCAGCAGTTCTACCTCCGCGTCTGGACGCCGTCCACGTCGT
TGCGCGACGAGTACCCCATCCCCAAGAACGCGCTCCTGTGCGGCCGGGCGGCCGGACGCC
GGACCAGGCCGCTGTGAGAGTGACACTGCCGCCGGATCATTCACAGCTTTTGTCATGAGA
GGATGACACACTATTGGTTTGGTCTTTGGAGAAGAGCAGGAACATACACAAGTTTATATA
CCCTCAACTGAAGGGAGGTTCAGAGGAACGAAAGTGTTGCTTGCCGATTTTTTTTCATTT
TAGTTTTTTTTTCCCTTTAAAGTTTCATATTTACGTCTCTGCTGAACTAAAACCGTGTTG
GAATTTCTGGGTCAACACTATAACTTATACTCCCTCCGTCCCAACATAGTATTTGTTTTA
GAGTGTTAACGGATTCATACAATATTTGATGTATGTGTATCATACATGTGTCTAGATTTA
CCGTTATCTATTTAAATATGGACAAAAAGAAAATAAAAAACTAAAACAAACTATATAATG
GGATAGAGGGAGTAACACCGATGTTACACGACTCAATGCCATAGGTCATGACATCGAGAT
ATTACACTATAAATAGTATATAT