Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d021579_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:7:156775201:156778159:1 gene:Zm00001d021579 gene_biotype:protein_coding transcript_biotype:protein_coding description:Filament-like plant protein 3
Sequence

ATGGACGACTTCCTCGAGATGGAGAAGCTCGCCTCTGCGTCAAAAGGCGACGCCGTCGAG
GACGCGAGCGGGCAGGTGGAGAAGGCGCTGCACGAGGCTCAGCGCGAGCTGAGGACTTCC
CGCCAGCGGGTAATGGTGGCAGAGGAGAGATCAGCTGAGCTACAGCGGCAGCTGAACCTT
GCCAATGGCGAGAAACATGCCATGGGGGCCGAGGTGAAAGCTGCTGAGGCGAAGAGAGGA
GAGCTGGAGGGCTTGCTCGAGCTCGCCCGCGCCGAGATCGCGGGGTTGCTGGACAAGGGG
CGCATCCTGGAGGAACGGCTCGAGTCTGAGAAGGCGCTGACACTTGAGCTCGCAGCAAAG
TACCAGGACATGGAGGCGCTGAGGGCAGAGAAGAGGGAGCTGAGCGCTCAGCTGGAGACG
TCACGGTCCGAAGCCAAGAAGCTCGGTGACAAGATCGCCCTGATGGAGAGGAAGCTGGAG
GTGGAGAAGGCCTTGTCGATCCGACTGGCGACGAAATGCCATGGCATTGATGCTCTGGAA
GCAAAGAAGAAGGGAGTCGAGCTCGAGCTGGAGACGGCGCGCGAGGAAATCGCTTCGCTG
CAAAACAAGGCTAGCAGCTTGGAACTGCGACGAGTCGAGGAAGAGAAAGCGTCGTCTGCT
GCACTCGCACTGCGGTGCCAAGAACTGGATGACCTTAGATCCCAGCTGGAGTCTTCGAAT
TCACGGATCGTTGAGCTCAATGAGAAGGTTAAAACGCTCGAGGATGTAGTCGAGGAACAG
AGGCCAGTGACGGTGGAATTGGAGTCTCAGCTCCGGTCGAGGCGCGCTGAAATCAGTAGC
CTGAAGGAGGATATAAGCCTGTTGCAGAAGAAGCTGGAGAGCCAGAAGAACCTGTCATCA
GCTTACATATCTGCACTTGGTGCTTCTGAAACAGAGAAGAAGGAGCTGGCTAGTCGGTTT
GAGCTCGGAGAGAAAGAAGCCGAGGAATTACGTGGGAAGATGAGCTTGCTTGAGGAACAG
ATCCGTAAAGAGAAGGCACGGTCATCCGAGTTTGCGGTAAAATGTCAGAAGATGGAGGAA
CAAATCTCCTGTAGATCTCTTCTTGGCCACCAACCAGTGAAATCATCTGCGGCGATCAAA
GATCTTCAGCTCAGAAAGGAGACAGAGCTGGCCAAGGCTGCAGAGAAACTGGCCGACTGC
CAGAAGACGATAGCTTCACTGAGCAGCCAGCTGAAATCGTTGGCTGATTTCGACGAATTC
CCCCCTGAAACTGAGACCAGTGGCGCTGACTCAGACGACGCCTGGGACAGCGATCTGAAG
CTTCTCCAACCCGCAAGCTATCCCACGCAGATTGGCTGTTTGGCAGTCACATGA

Peptide Sequence

PEP ID

Zm00001d021579_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:7:156775201:156778159:1 gene:Zm00001d021579 transcript:Zm00001d021579_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Filament-like plant protein 3
Sequence

MDDFLEMEKLASASKGDAVEDASGQVEKALHEAQRELRTSRQRVMVAEERSAELQRQLNL
ANGEKHAMGAEVKAAEAKRGELEGLLELARAEIAGLLDKGRILEERLESEKALTLELAAK
YQDMEALRAEKRELSAQLETSRSEAKKLGDKIALMERKLEVEKALSIRLATKCHGIDALE
AKKKGVELELETAREEIASLQNKASSLELRRVEEEKASSAALALRCQELDDLRSQLESSN
SRIVELNEKVKTLEDVVEEQRPVTVELESQLRSRRAEISSLKEDISLLQKKLESQKNLSS
AYISALGASETEKKELASRFELGEKEAEELRGKMSLLEEQIRKEKARSSEFAVKCQKMEE
QISCRSLLGHQPVKSSAAIKDLQLRKETELAKAAEKLADCQKTIASLSSQLKSLADFDEF
PPETETSGADSDDAWDSDLKLLQPASYPTQIGCLAVT

Transcript Sequence

Transcript ID

Zm00001d021579_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:156775201:156778159:1 gene:Zm00001d021579 gene_biotype:protein_coding transcript_biotype:protein_coding description:Filament-like plant protein 3
Sequence

CTTCAAATCTTTGAACCATCTCACTGTTTCTGCGTAATGGTATTTCAAATCTTATGAAAA
CAAATTAATCCGCAGGATATATTTCAAATCTTTGAGATGGGTCGCATTCTTTTCTCTACT
GGTTTCGGCAAAAACAAGCAAGTTAATCCGCATGATATATTGACGGTGTTGGTTTCTTGA
TCAGGATACTGCCAAGAGCTCCCCAAACTCGACTCAGTCGCCGGAGGTCACATCGAAGGA
ACTGGAAGACGGTGACAATGTGAAGGTGAAGGTATTGAGTGAGAGGCTCTCATCCGTAGT
TCTGGATATTCGTGCGAAGGATGATCTCGTGAAGCAGCATTCCAAGGTTGCAGAGGAGGC
TGTTCTAGGATGGGAGAAGGCCGAGACAGAGATCGCGTCACTGAAGGCGCAGCTGAACGC
TGCGGCGGCCAAGAACTCTGCGCTGGAGGACCGCCTCGTCCACCTGGACGGCGCCCTCAA
GGAATGCGTCCGGCAGCTCCGGCGCGCCAAGGACGAGCAGGACCAGACGGTGCAGGGCGC
GCTAGCACAGCAAGCGCGGCAGTGGGAGTCGCACAAGGCCGACCTCGAGCTGCGCGTCGT
CGAGCTCACGGCGAGGTTGGAGGCCAAGTCCGAGCGCTCGGTGGCCGCCGCCGACTGCGA
CACCGGCTCCAGGCTAGCCGCGCTGGAGAAGGAGAACTCGGCGCTCAGGACGCAGCTGCT
CGCCAAGACGGAGGAGCTGGAGCTCAGGACGATCGAGAAGGAGCTCAACCGGCGGGCGGC
GGAGACTGCGAGCAAGCAGCAGCTGGAGGGCATCAAGAAGGTGGCCAAGCTCCAAGTTGA
GTGCAGGAGGCTGCAGGCCGCGGCACAACGGAGGCCCTCCGTGAACGTCGAACTCAGGCG
TTCTCCGAGCTCGGCCTGCGCCGAGTCGGTGACGGATTGCCAGTCGGACTGCTCCGACTC
ATGGGCCTCGGTCCTCGTCGCCGAGCTCGACCAGTTCAGGATCGACAGGAGCGGCGCGAG
CAGCAGGGCCGCCAGCCTCGCGACCGCGGACATTGGCGTGATGGACGACTTCCTCGAGAT
GGAGAAGCTCGCCTCTGCGTCAAAAGGCGACGCCGTCGAGGACGCGAGCGGGCAGGTGGA
GAAGGCGCTGCACGAGGCTCAGCGCGAGCTGAGGACTTCCCGCCAGCGGGTAATGGTGGC
AGAGGAGAGATCAGCTGAGCTACAGCGGCAGCTGAACCTTGCCAATGGCGAGAAACATGC
CATGGGGGCCGAGGTGAAAGCTGCTGAGGCGAAGAGAGGAGAGCTGGAGGGCTTGCTCGA
GCTCGCCCGCGCCGAGATCGCGGGGTTGCTGGACAAGGGGCGCATCCTGGAGGAACGGCT
CGAGTCTGAGAAGGCGCTGACACTTGAGCTCGCAGCAAAGTACCAGGACATGGAGGCGCT
GAGGGCAGAGAAGAGGGAGCTGAGCGCTCAGCTGGAGACGTCACGGTCCGAAGCCAAGAA
GCTCGGTGACAAGATCGCCCTGATGGAGAGGAAGCTGGAGGTGGAGAAGGCCTTGTCGAT
CCGACTGGCGACGAAATGCCATGGCATTGATGCTCTGGAAGCAAAGAAGAAGGGAGTCGA
GCTCGAGCTGGAGACGGCGCGCGAGGAAATCGCTTCGCTGCAAAACAAGGCTAGCAGCTT
GGAACTGCGACGAGTCGAGGAAGAGAAAGCGTCGTCTGCTGCACTCGCACTGCGGTGCCA
AGAACTGGATGACCTTAGATCCCAGCTGGAGTCTTCGAATTCACGGATCGTTGAGCTCAA
TGAGAAGGTTAAAACGCTCGAGGATGTAGTCGAGGAACAGAGGCCAGTGACGGTGGAATT
GGAGTCTCAGCTCCGGTCGAGGCGCGCTGAAATCAGTAGCCTGAAGGAGGATATAAGCCT
GTTGCAGAAGAAGCTGGAGAGCCAGAAGAACCTGTCATCAGCTTACATATCTGCACTTGG
TGCTTCTGAAACAGAGAAGAAGGAGCTGGCTAGTCGGTTTGAGCTCGGAGAGAAAGAAGC
CGAGGAATTACGTGGGAAGATGAGCTTGCTTGAGGAACAGATCCGTAAAGAGAAGGCACG
GTCATCCGAGTTTGCGGTAAAATGTCAGAAGATGGAGGAACAAATCTCCTGTAGATCTCT
TCTTGGCCACCAACCAGTGAAATCATCTGCGGCGATCAAAGATCTTCAGCTCAGAAAGGA
GACAGAGCTGGCCAAGGCTGCAGAGAAACTGGCCGACTGCCAGAAGACGATAGCTTCACT
GAGCAGCCAGCTGAAATCGTTGGCTGATTTCGACGAATTCCCCCCTGAAACTGAGACCAG
TGGCGCTGACTCAGACGACGCCTGGGACAGCGATCTGAAGCTTCTCCAACCCGCAAGCTA
TCCCACGCAGATTGGCTGTTTGGCAGTCACATGATTCACGATCCTCGTTGGCAAGTGGAT
AGCGAAACTGTTTTTGCTTGGCTTCCGCCGCATGATTGCTGTGATGAGATTGCCATGATG
TTCCACCACATGTCATATAGAGTTAAGTTAATAGGTGAGCAAATGTTCATATGGAAGCTG
TTTATAGAGTTGTTTGGTGAAGCCTCAAAGGGACTCATA