Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d021498_T021
CDS Infomation	cds chromosome:B73_RefGen_v4:7:154121604:154131325:-1 gene:Zm00001d021498 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin protein ligase RIN2
Sequence	ATGGCGACGGTGAACTGCCTCTACGTCGCGGCCGCCTCCACGGCGGTAAGCACCGCTGCT CTGCAGTGGTGGGCGTCCTCGCTCCTCGACGGCGACGCTGGGGCCGGCGGGGATGGAGAC TGGCTTGGAGCCGTGCTGCGGTCAAGGGTCACCGTCGCGCTCCTGGCGAATCTGGCGGCC CACGTGTTCGTCGTTGTCATCCTCGCGCTCAAGACTATATTTTTTGTTCAGCTAACTTCT GTAGAGACCAGAAAAGTGTTGGAGCACATCATTAACTATGTACTTCACAAGGGAACTTTT CTCCCGCTGGCTGTGCCTCCAACTTCTCAGCAAATTATCCTTTGGTCAACTTGGTTGGTC ATTCTTTGTTCACTGAAGATGTTTCAATCATTGGCCAGAGAACGTCTAGAGCAGCTCAAT GCTTCTCCCTCAGCGACTCCTTCAAAATATTTTCGTGTGTACTCTGCATTGCTTCTGGTT TTATCAGCTGATCTACTTTGGATGTGGCTCAGTGTAGGGTTCTGCAGATCCTGTAATTCC AAGTTGTTTTGGCTCCTGTTCTTTGAGCCACTTAGTATTGCCTTTGATACGCTGCAGTCT ATCATGGTGCATGGGTTTCAGTTATTTGACATCTGGCAACGACATCTAATGGAAAGTGGT GCGGACTTTCTTGATTTCCAGAAATCTTATAAGCAAGCAGCAGGATCTTTTTCTGAATGG AGGGGCAAGCTTACTAGGGACTTTGGTTTTGCTATTGATTTGATAAGCATGTTGATGTCA TTTGGTCATTACTCGATGATCTTTTGGCTTCGTGGTATGGCGTTTCATCTGGTTGATGCA GTTCTCTTATGGAACTTGCGTGCTCTTATAGTTTCCTTTTTGAAGAGGATTAAAACTTAC ATCAAATTACGGAAGGCACTTAGTTCACTCGACGGAGCACTTCCAGATGCTACTTATGAT GAAATTTGTGCATATGATGATGAGTGTGCCATCTGCAGGGGACCGATGGGTCGAGCTAAA AAGTTGTCCTGCAACCATCTATTTCATCTAGCTTGTTTACGATCATGGTTGGATCAAGGA TTAATGGAAGGTTACTCCTGCCCAACTTGTCGGAGACCGCTCGTATTGTCATCTGAAGGG CAAACAAGGTCTCCGATTGTGGAGGCAGCAAATGTTCAGCGAATCGCAGAACAGCTTACT ATGGGGATGAATCAGCAGAGAGTTTCTGGTAATGAACATCCTGTTGAACAGCAGAACCCT TCAGATGCTGTTTGGAGGGGTGCTGGTCTGGATGCTAGCTGGATTCCACCGTGGTCAAGC CCTGTGATAGATAATCCCAGTTCCTCTAGTGCAGTGAGGTCAGTAGGTCTTTCTGGAGTT CAGATGATGATGAGGCAGTTGGCTTCTGTGACCGACAGTTATGGGCATGCTGATGGTACC TGGAACCTATGGCCCGAGCCCATGGCAGGGTCCTCTCTTGTTCCATCCACTTCCTCGATG GTGCCTGGTAGTGCATCTGCTTCCGGATTGCGGCTCCGTGGTAGTGCAGGCACAGGCAAT GGAAGTCTTTCAGAGGTACTCACTATGGTAGATAGGGTGCGGGAAGTTCTACCTCATATT CCTGACGAGCTAATTATAGAGGTTTGTGCCTGTCTCGCACAGCTCTGGTCGTAG

Peptide Sequence

PEP ID	Zm00001d021498_P021
PEP Infomation	pep chromosome:B73_RefGen_v4:7:154121604:154131325:-1 gene:Zm00001d021498 transcript:Zm00001d021498_T021 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin protein ligase RIN2
Sequence	MATVNCLYVAAASTAVSTAALQWWASSLLDGDAGAGGDGDWLGAVLRSRVTVALLANLAA HVFVVVILALKTIFFVQLTSVETRKVLEHIINYVLHKGTFLPLAVPPTSQQIILWSTWLV ILCSLKMFQSLARERLEQLNASPSATPSKYFRVYSALLLVLSADLLWMWLSVGFCRSCNS KLFWLLFFEPLSIAFDTLQSIMVHGFQLFDIWQRHLMESGADFLDFQKSYKQAAGSFSEW RGKLTRDFGFAIDLISMLMSFGHYSMIFWLRGMAFHLVDAVLLWNLRALIVSFLKRIKTY IKLRKALSSLDGALPDATYDEICAYDDECAICRGPMGRAKKLSCNHLFHLACLRSWLDQG LMEGYSCPTCRRPLVLSSEGQTRSPIVEAANVQRIAEQLTMGMNQQRVSGNEHPVEQQNP SDAVWRGAGLDASWIPPWSSPVIDNPSSSSAVRSVGLSGVQMMMRQLASVTDSYGHADGT WNLWPEPMAGSSLVPSTSSMVPGSASASGLRLRGSAGTGNGSLSEVLTMVDRVREVLPHI PDELIIEVCACLAQLWS

Transcript Sequence

Transcript ID	Zm00001d021498_T021
Transcript Infomation	cdna chromosome:B73_RefGen_v4:7:154121604:154131325:-1 gene:Zm00001d021498 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin protein ligase RIN2
Sequence	CCCGTGAGGCCGTGACGCCCCCCTCGGCCTCGCCTCGCCATCGCTCGCGGCATCGCCGCC TGCCCCCTTTCCCCCACGCGAATAAAGCGCCGGAAGCGCGCCCCCCAAGCAAAGTCCTCC GGCGCTCAGGATCGGGAGCCACCCCCTAGGGTTAGGGCTCCGTTTTGCCTCGTTCCGGCG TCGACCGATGCGCGGCGCATGGCGACGGTGAACTGCCTCTACGTCGCGGCCGCCTCCACG GCGGTAAGCACCGCTGCTCTGCAGTGGTGGGCGTCCTCGCTCCTCGACGGCGACGCTGGG GCCGGCGGGGATGGAGACTGGCTTGGAGCCGTGCTGCGGTCAAGGGTCACCGTCGCGCTC CTGGCGAATCTGGCGGCCCACGTGTTCGTCGTTGTCATCCTCGCGCTCAAGACTATATTT TTTGTTCAGCTAACTTCTGTAGAGACCAGAAAAGTGTTGGAGCACATCATTAACTATGTA CTTCACAAGGGAACTTTTCTCCCGCTGGCTGTGCCTCCAACTTCTCAGCAAATTATCCTT TGGTCAACTTGGTTGGTCATTCTTTGTTCACTGAAGATGTTTCAATCATTGGCCAGAGAA CGTCTAGAGCAGCTCAATGCTTCTCCCTCAGCGACTCCTTCAAAATATTTTCGTGTGTAC TCTGCATTGCTTCTGGTTTTATCAGCTGATCTACTTTGGATGTGGCTCAGTGTAGGGTTC TGCAGATCCTGTAATTCCAAGTTGTTTTGGCTCCTGTTCTTTGAGCCACTTAGTATTGCC TTTGATACGCTGCAGTCTATCATGGTGCATGGGTTTCAGTTATTTGACATCTGGCAACGA CATCTAATGGAAAGTGGTGCGGACTTTCTTGATTTCCAGAAATCTTATAAGCAAGCAGCA GGATCTTTTTCTGAATGGAGGGGCAAGCTTACTAGGGACTTTGGTTTTGCTATTGATTTG ATAAGCATGTTGATGTCATTTGGTCATTACTCGATGATCTTTTGGCTTCGTGGTATGGCG TTTCATCTGGTTGATGCAGTTCTCTTATGGAACTTGCGTGCTCTTATAGTTTCCTTTTTG AAGAGGATTAAAACTTACATCAAATTACGGAAGGCACTTAGTTCACTCGACGGAGCACTT CCAGATGCTACTTATGATGAAATTTGTGCATATGATGATGAGTGTGCCATCTGCAGGGGA CCGATGGGTCGAGCTAAAAAGTTGTCCTGCAACCATCTATTTCATCTAGCTTGTTTACGA TCATGGTTGGATCAAGGATTAATGGAAGGTTACTCCTGCCCAACTTGTCGGAGACCGCTC GTATTGTCATCTGAAGGGCAAACAAGGTCTCCGATTGTGGAGGCAGCAAATGTTCAGCGA ATCGCAGAACAGCTTACTATGGGGATGAATCAGCAGAGAGTTTCTGGTAATGAACATCCT GTTGAACAGCAGAACCCTTCAGATGCTGTTTGGAGGGGTGCTGGTCTGGATGCTAGCTGG ATTCCACCGTGGTCAAGCCCTGTGATAGATAATCCCAGTTCCTCTAGTGCAGTGAGGTCA GTAGGTCTTTCTGGAGTTCAGATGATGATGAGGCAGTTGGCTTCTGTGACCGACAGTTAT GGGCATGCTGATGGTACCTGGAACCTATGGCCCGAGCCCATGGCAGGGTCCTCTCTTGTT CCATCCACTTCCTCGATGGTGCCTGGTAGTGCATCTGCTTCCGGATTGCGGCTCCGTGGT AGTGCAGGCACAGGCAATGGAAGTCTTTCAGAGGTACTCACTATGGTAGATAGGGTGCGG GAAGTTCTACCTCATATTCCTGACGAGCTAATTATAGAGGTTTGTGCCTGTCTCGCACAG CTCTGGTCGTAGTTGATTCTTGCGACTTTTACACACACTGATGCCTTGTCTGTTCCCATT TCTCGCTGTAGGATTTGATGAGGACAAACAACATAAACGCGACTGTGAATAATCTTCTGC TGATGCAATAGTAGATACGTCAATACAACATATAAGTATGACGTTTACTGGCTGTAAAAG CTTATAAGAAAAGTATGTGTATAGTTAAAGGCGAGCCTGGGTGTAACAACACTCTTCGAT CCTGTAATAAAATCCTTTTCTCTC