Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d021404_T010
CDS Infomation	cds chromosome:B73_RefGen_v4:7:151350817:151355357:1 gene:Zm00001d021404 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase RF4
Sequence	ATGTCTACTATCGCGACCCCGCCGCCGCCGATTGCGCAAGAGAAGGCCGCCAGCCGGAAT AAGCGCAAGTACCGTGCCGAGCCACCTTCCGCCGAGTTGGGCCCATACGGGCTGGAGTAC CCGCTGACGGCGGACTGCATGGGATTCGAGTTTATGTCGCCTGAGAAGGCTGCCATGGCA GCAGCGGTAGCCGCTGCCGAGGGTGTCAGCCTTGACCTCCTCCAGAACTCGTGCGAAAAG TGCAAAGATCTCCACCCTACTGCGGAGGAGTTACTGGACTGCCAACGATATGTGAATTGG AGCGACCCAAACGAGACGCAGCTGGAGGAGATCCTTCTCAAGAGTCTGGGCACCACCTTT GACAATGCTGTGAGTCTGATCACCACAATGGGCTACTCTGAGGCGGTTGCACGGGCTGCT GTTGTGCGGGCAGCTGCGCAATACAACTGGAGGGAGAGCCTTGCAGGGTTTGGAGAGGCA GCAGTTGAGGTTCTCAAGACGGAAGGGGACATGTTGCCGAGGGAGGGTGCCTCTGTTGAA GACATGAGGAGGATTGAGCAGGCTGTGCTTGGTAGTATGGTTATGTGGGTAAATGAGGCT CAGCCACTCTGCACCACAGGCGATGTAATGTTTTGCTTGCTTATGTCTGACATGAACGTG GCAAATGCCAGTGCCATGGACTACAATACTTCTTCCCTCCCATCTGTTGCTGCTCAAGTT ATTGCCCAACCAGACGCGGGGAACTATGTTACTGGTTCAGGTTCAAATTTATCAGTTTCT ATTACCAACCCACAGACTGGCGTTACATTCCGTGGAAAACTTACCCCAATGCCACCGGGC TCTTATGGTGCTGTAAAAGCTGATTCGTCAATGGCACCAGCAAGCCTCAATGTGTCAAGT ACCAAACCCTCGGTGCCGGGCAAGACTCAGTGTGTGATACCAAATATTGAGCCAAAAGAA CAACCTGTTCCTATACATGATCATTCAGAGGACCAACCATTTGTTGCTGCTGCGACACAA TCTGTGAAAAATGACAAGCCATCCCCAAGCAAGAGGGGGGGCTCTAAGAGGGACTCCTTG CATCGACAGAAGTTGACAAGCTTTGATAAAAGTTCCCGAGCATTGGGTTCCAAAGGTTCT CTTAGGTCTGGCAAGCATAGCTATTCGGCCAGTGCGGTATTGGAGAGGAAGTGCCGGTCA TTTTCAGATTCTACTACTAGCAACTTGAAGGGTGCATCAAGAGTTGCTAAAGGGTTTGCT GCAAGCATATCTGGATCAGAAGTATCAGCTGACCTTTCCTTTACTGGTACCCTTTCCCCT TCTCCATCATTTGATGCCAAGATAGTTAGTAACTCAAACCCAGCACCTACTGCTAGCACA GATCTTTCATTGTCATTGCCCTCCTCAAGTGATAGTTTAACACCATCTTCGAATCATGAT TCCATTACCGAGGGAGTGGACTCTAGTAGCAAAATTAATTTTTCGTATGATGAAGAACAG AAGGTCTGGATCCCACAAGATAAAAAGGATAAAATTGTCTTGATTCTTGTTCAGAGGCAG AAAGAACTGCAAGCACATATGCATGACTGGACAGACTGGGCCCAGCAGAAAGTGATGCAG GTCGCACACCGACTTGCAAAGGAGAAGGATGAACTTCAGTCACTCAGGAAAGAGAAGGAA GAGGCTGACCGCCTGCAAGAGGAGAGGCACCATTTGGAAGAGAGTACTCGGAAAAAGCTT CTGGAGATGGAGTCTGCAATTTCTAGGGCAAATGCTCAGCTGGAGAAAGCAGAAGCTTCT GCTCGCAGACGTGAGGTTGAGAATGCACAACTCACGTTACAGATGGAAGCTGCAAAGCGA CATGCAGCAGAGTCAGCAACAAATATTTCAGAGCTTTTAAAGAAAGACGAGAACAGCCGT AAAAGGTCTCAGCGTTGGGAATCTGATAGAGCCCTATTACAAGAGGAACTTGCAGCACAA AAGAGCAGGTTATTTCGGGTTCAAGAACAACTCCAGCATGCTAAAGAGCTAAAGGATCAA GTGCAGGCAAGGTGGAAACAAGAGGAGGCTGCAAAGACTGAGGCAATTGCCCTTGTAACC TCAGTGAGGAAAGAGAGAGGGCAAATTGAGACCTCCATGAGGTCAGAAGAGAATTTGCTG CATCTCAAAGCAGCGAATGACGCACAAAGATACAAGAGTGAGATCCGTGTCCTTGAGCAG CGTATTGCGCAGCTGAAGGTGTCATTGGACTCTTCAAGGGTTGCTGCCCCCAAGTGGGGA GCCGACAATAAATCCTATGCATTGCATCTTTCTGAAGGGAGAAAGAACAACAATGCCCAA GTTTTGTCCAACACAGCAGTACCCCAAGGTCTCGATTTTGACGATATACAGCGCGACCGG GAGTGCGTCATGTGCTTGAGCGAGGAGATGTCCGTGGTGTTCCTCCCCTGCGCCCACCAG GTCGTCTGTGCCAAATGCAGCGACCTCCATGAGAAGCAAGGTATGAAGGAATGCCCTTCG TGCCGGGCCCCCATCCAGCGCAGGGTGCGCGCCCGCCCCGCCGGTTGCTAG

Peptide Sequence

PEP ID	Zm00001d021404_P010
PEP Infomation	pep chromosome:B73_RefGen_v4:7:151350817:151355357:1 gene:Zm00001d021404 transcript:Zm00001d021404_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase RF4
Sequence	MSTIATPPPPIAQEKAASRNKRKYRAEPPSAELGPYGLEYPLTADCMGFEFMSPEKAAMA AAVAAAEGVSLDLLQNSCEKCKDLHPTAEELLDCQRYVNWSDPNETQLEEILLKSLGTTF DNAVSLITTMGYSEAVARAAVVRAAAQYNWRESLAGFGEAAVEVLKTEGDMLPREGASVE DMRRIEQAVLGSMVMWVNEAQPLCTTGDVMFCLLMSDMNVANASAMDYNTSSLPSVAAQV IAQPDAGNYVTGSGSNLSVSITNPQTGVTFRGKLTPMPPGSYGAVKADSSMAPASLNVSS TKPSVPGKTQCVIPNIEPKEQPVPIHDHSEDQPFVAAATQSVKNDKPSPSKRGGSKRDSL HRQKLTSFDKSSRALGSKGSLRSGKHSYSASAVLERKCRSFSDSTTSNLKGASRVAKGFA ASISGSEVSADLSFTGTLSPSPSFDAKIVSNSNPAPTASTDLSLSLPSSSDSLTPSSNHD SITEGVDSSSKINFSYDEEQKVWIPQDKKDKIVLILVQRQKELQAHMHDWTDWAQQKVMQ VAHRLAKEKDELQSLRKEKEEADRLQEERHHLEESTRKKLLEMESAISRANAQLEKAEAS ARRREVENAQLTLQMEAAKRHAAESATNISELLKKDENSRKRSQRWESDRALLQEELAAQ KSRLFRVQEQLQHAKELKDQVQARWKQEEAAKTEAIALVTSVRKERGQIETSMRSEENLL HLKAANDAQRYKSEIRVLEQRIAQLKVSLDSSRVAAPKWGADNKSYALHLSEGRKNNNAQ VLSNTAVPQGLDFDDIQRDRECVMCLSEEMSVVFLPCAHQVVCAKCSDLHEKQGMKECPS CRAPIQRRVRARPAGC

Transcript Sequence

Transcript ID	Zm00001d021404_T010
Transcript Infomation	cdna chromosome:B73_RefGen_v4:7:151350817:151355357:1 gene:Zm00001d021404 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative E3 ubiquitin-protein ligase RF4
Sequence	TCCTCCGCCTTCCCTTCACCCCCATATCGCCATACACTTCTCCACTCCTCCCCTGATCAC CACCCCCCCCCCCCCCCCCCCCCCTCGATCCAATCCGGTTTTTTCTTCGATTCGGCGCGT GGCAACCTGGTCAGTCCAATCCGTCCGTGAAGAATTTATCCGTATTTTCGTTTGCGTCGC ATCGTTTCTGCGAAGGATTTCCTGTTCGTTTTGGGGGAGAAAGGCGTCGTCCTTGATGTC TACTATCGCGACCCCGCCGCCGCCGATTGCGCAAGAGAAGGCCGCCAGCCGGAATAAGCG CAAGTACCGTGCCGAGCCACCTTCCGCCGAGTTGGGCCCATACGGGCTGGAGTACCCGCT GACGGCGGACTGCATGGGATTCGAGTTTATGTCGCCTGAGAAGGCTGCCATGGCAGCAGC GGTAGCCGCTGCCGAGGGTGTCAGCCTTGACCTCCTCCAGAACTCGTGCGAAAAGTGCAA AGATCTCCACCCTACTGCGGAGGAGTTACTGGACTGCCAACGATATGTGAATTGGAGCGA CCCAAACGAGACGCAGCTGGAGGAGATCCTTCTCAAGAGTCTGGGCACCACCTTTGACAA TGCTGTGAGTCTGATCACCACAATGGGCTACTCTGAGGCGGTTGCACGGGCTGCTGTTGT GCGGGCAGCTGCGCAATACAACTGGAGGGAGAGCCTTGCAGGGTTTGGAGAGGCAGCAGT TGAGGTTCTCAAGACGGAAGGGGACATGTTGCCGAGGGAGGGTGCCTCTGTTGAAGACAT GAGGAGGATTGAGCAGGCTGTGCTTGGTAGTATGGTTATGTGGGTAAATGAGGCTCAGCC ACTCTGCACCACAGGCGATGTAATGTTTTGCTTGCTTATGTCTGACATGAACGTGGCAAA TGCCAGTGCCATGGACTACAATACTTCTTCCCTCCCATCTGTTGCTGCTCAAGTTATTGC CCAACCAGACGCGGGGAACTATGTTACTGGTTCAGGTTCAAATTTATCAGTTTCTATTAC CAACCCACAGACTGGCGTTACATTCCGTGGAAAACTTACCCCAATGCCACCGGGCTCTTA TGGTGCTGTAAAAGCTGATTCGTCAATGGCACCAGCAAGCCTCAATGTGTCAAGTACCAA ACCCTCGGTGCCGGGCAAGACTCAGTGTGTGATACCAAATATTGAGCCAAAAGAACAACC TGTTCCTATACATGATCATTCAGAGGACCAACCATTTGTTGCTGCTGCGACACAATCTGT GAAAAATGACAAGCCATCCCCAAGCAAGAGGGGGGGCTCTAAGAGGGACTCCTTGCATCG ACAGAAGTTGACAAGCTTTGATAAAAGTTCCCGAGCATTGGGTTCCAAAGGTTCTCTTAG GTCTGGCAAGCATAGCTATTCGGCCAGTGCGGTATTGGAGAGGAAGTGCCGGTCATTTTC AGATTCTACTACTAGCAACTTGAAGGGTGCATCAAGAGTTGCTAAAGGGTTTGCTGCAAG CATATCTGGATCAGAAGTATCAGCTGACCTTTCCTTTACTGGTACCCTTTCCCCTTCTCC ATCATTTGATGCCAAGATAGTTAGTAACTCAAACCCAGCACCTACTGCTAGCACAGATCT TTCATTGTCATTGCCCTCCTCAAGTGATAGTTTAACACCATCTTCGAATCATGATTCCAT TACCGAGGGAGTGGACTCTAGTAGCAAAATTAATTTTTCGTATGATGAAGAACAGAAGGT CTGGATCCCACAAGATAAAAAGGATAAAATTGTCTTGATTCTTGTTCAGAGGCAGAAAGA ACTGCAAGCACATATGCATGACTGGACAGACTGGGCCCAGCAGAAAGTGATGCAGGTCGC ACACCGACTTGCAAAGGAGAAGGATGAACTTCAGTCACTCAGGAAAGAGAAGGAAGAGGC TGACCGCCTGCAAGAGGAGAGGCACCATTTGGAAGAGAGTACTCGGAAAAAGCTTCTGGA GATGGAGTCTGCAATTTCTAGGGCAAATGCTCAGCTGGAGAAAGCAGAAGCTTCTGCTCG CAGACGTGAGGTTGAGAATGCACAACTCACGTTACAGATGGAAGCTGCAAAGCGACATGC AGCAGAGTCAGCAACAAATATTTCAGAGCTTTTAAAGAAAGACGAGAACAGCCGTAAAAG GTCTCAGCGTTGGGAATCTGATAGAGCCCTATTACAAGAGGAACTTGCAGCACAAAAGAG CAGGTTATTTCGGGTTCAAGAACAACTCCAGCATGCTAAAGAGCTAAAGGATCAAGTGCA GGCAAGGTGGAAACAAGAGGAGGCTGCAAAGACTGAGGCAATTGCCCTTGTAACCTCAGT GAGGAAAGAGAGAGGGCAAATTGAGACCTCCATGAGGTCAGAAGAGAATTTGCTGCATCT CAAAGCAGCGAATGACGCACAAAGATACAAGAGTGAGATCCGTGTCCTTGAGCAGCGTAT TGCGCAGCTGAAGGTGTCATTGGACTCTTCAAGGGTTGCTGCCCCCAAGTGGGGAGCCGA CAATAAATCCTATGCATTGCATCTTTCTGAAGGGAGAAAGAACAACAATGCCCAAGTTTT GTCCAACACAGCAGTACCCCAAGGTCTCGATTTTGACGATATACAGCGCGACCGGGAGTG CGTCATGTGCTTGAGCGAGGAGATGTCCGTGGTGTTCCTCCCCTGCGCCCACCAGGTCGT CTGTGCCAAATGCAGCGACCTCCATGAGAAGCAAGGTATGAAGGAATGCCCTTCGTGCCG GGCCCCCATCCAGCGCAGGGTGCGCGCCCGCCCCGCCGGTTGCTAGATTTCACATATACC ATTTGGATTTTACTTTTCTTCTTTTTTTCACCTTGATTGCTCAGCTTAAGTTGATGGAAG ATTGGAGGGAATAATCAGGTGGTGTGAGTGGTTGAAACTGTGACAATAATACATCGTTAA ACACCAAACAAGCCCCAGCAGACAGTGGGTACTGGTTTGGTTTGTTATATGGCTATACCG GCCGCTTCTGAATGCTTTGGTTTTGCTGCACTCTGGTTCCAAGTCCCGTACTGTTTTGTA AAAATGTCGATCTGTGACTGTAATGCTCGGTAG