Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d021297_T015
CDS Infomation

cds chromosome:B73_RefGen_v4:7:148170501:148189855:1 gene:Zm00001d021297 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pantothenate kinase 2
Sequence

ATGGATACAATTTCTTTTGCAGTGCATTTCTGGTCAAAAGGAGAGGCACAAGCTATGTTT
CTGCGCCATGAGGGCTTTCTAGGAGCTCTTGGTGCATTTATGAGTTATGAGAAGCATGGT
CTTGATGACTTAAGGGTACATCATTTGGTTGAACGCTTCCCAATGGGTGCTCCATATGTT
GGTGGAAAGATTCACGGGCCACCTCTTGGAGATCTCAATGAGAAGATATCATGGATGGAG
AAGTTTGTGCAAAAGGGTACTCAGATTATAGCCCCTGTACCTATGGGAGTTCCAGCTACG
ACAGGTATGGGAGGCTTTGAAAGGCCGACTGCTAAGGGTGACATCTTGCGGTCAGATGCA
AGTGCAGCGCTAAATGTCGGTGTTCTCCATCTTGTACCCACATTGGATGTATTTCCATTG
TTGGAAGATCCAAAGACGTATGAACCAAACACAATTGATCTTGACCAGGATGAGTTCAAG
TACTGGTTCAAGATTTTGTCAGATCATTCGCCGGACCTCGTGGACAAGGCAGTTGCTAGT
GAAGGTGGGACTGATGATGCCAAAAGACGGGGTGATGCATTTGCACATGCCTTTTCTGCT
CATCTGGCAAGATTGATGGAGGAGCCAGCTGCTTATGGAAAGTTTGGTTTGGCCAACCTG
TTGGAATTGAGAGAAGAATGTCTGAGGGAATTTCAGTTCGTTGATGCATATATTAGCATC
AAGCAAAGGGAAAATGAAGCTTCACTGGCTGTTTTACCGGATCTTCTGATGGAACTTGAT
AGTATGAATGAGGAAGCTAGGCTGCTTGCACTAATTGAAGGTGTCCTTGCTGCAAATATA
TTTGATTGGGGGTCTCGAGCTTGTGTAGAACTTTATCACAAGGGAACTATAATAGAAATC
TATCGCATGAGTCGCAAGAAGATGCAACGTCCTTGGCGGATTGATGACTTTGACATGTTC
AAAAAGAGAATGCTTACTGATAGGAAGGACCAATCATACAAAAGAGCACTGCTTTTTGTT
GATAACTCAGGTGCTGATGTGGTCCTTGGAATGCTTCCTTTAGCTAGGGAGCTTTTACGC
CATGGAACAGAGGTAGTTCTTGTTGCAAATTCGTTGCCGGCTTTGAATGATGTTACCGCT
AATGAACTTCCAGAAGTTATAGCTGAAGCCTCAAAGCACTGTGGTATCCTTCGGAAAGCT
GCAGAAGCTGGTGGATTGATAGTCGATGCAATGGCTGGCATCCAAGATGATCTCAAGGAT
GAGACAGTGTCAGTGCCACTAATGGTTGTTGAGAATGGATGCGGCAGTCCATGTATTGAT
TTCCGGCAGGTTAGCTCAGAGCTTGCTGCTGCTGCAAAGGATGCAGATTTGTTAATTTTA
GAAGGCATGGGGCGATCACTGCATACCAACCTCAATGCCCGTTTTAAGTGTGATGCTCTA
AAGCTTGCTATGGTCAAGAATCAGCGATTGGCAGAAAAACTCTTCAATGGGAGTCTATAC
GACTGCATCTGTAAATTTGAACCAGTTCCTTAA

Peptide Sequence

PEP ID

Zm00001d021297_P015
PEP Infomation

pep chromosome:B73_RefGen_v4:7:148170501:148189855:1 gene:Zm00001d021297 transcript:Zm00001d021297_T015 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pantothenate kinase 2
Sequence

MDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLRVHHLVERFPMGAPYV
GGKIHGPPLGDLNEKISWMEKFVQKGTQIIAPVPMGVPATTGMGGFERPTAKGDILRSDA
SAALNVGVLHLVPTLDVFPLLEDPKTYEPNTIDLDQDEFKYWFKILSDHSPDLVDKAVAS
EGGTDDAKRRGDAFAHAFSAHLARLMEEPAAYGKFGLANLLELREECLREFQFVDAYISI
KQRENEASLAVLPDLLMELDSMNEEARLLALIEGVLAANIFDWGSRACVELYHKGTIIEI
YRMSRKKMQRPWRIDDFDMFKKRMLTDRKDQSYKRALLFVDNSGADVVLGMLPLARELLR
HGTEVVLVANSLPALNDVTANELPEVIAEASKHCGILRKAAEAGGLIVDAMAGIQDDLKD
ETVSVPLMVVENGCGSPCIDFRQVSSELAAAAKDADLLILEGMGRSLHTNLNARFKCDAL
KLAMVKNQRLAEKLFNGSLYDCICKFEPVP

Transcript Sequence

Transcript ID

Zm00001d021297_T015
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:148170501:148189855:1 gene:Zm00001d021297 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pantothenate kinase 2
Sequence

TCATTTTTTGTAGATTTCCTATCTTAATGCACTTCGTTATGGACTCAAGAGGATATTTTT
TGGTGGATTCTTCATCCGTGGTCATGCCTACACTATGGATACAATTTCTTTTGCAGTGCA
TTTCTGGTCAAAAGGAGAGGCACAAGCTATGTTTCTGCGCCATGAGGGCTTTCTAGGAGC
TCTTGGTGCATTTATGAGTTATGAGAAGCATGGTCTTGATGACTTAAGGGTACATCATTT
GGTTGAACGCTTCCCAATGGGTGCTCCATATGTTGGTGGAAAGATTCACGGGCCACCTCT
TGGAGATCTCAATGAGAAGATATCATGGATGGAGAAGTTTGTGCAAAAGGGTACTCAGAT
TATAGCCCCTGTACCTATGGGAGTTCCAGCTACGACAGGTATGGGAGGCTTTGAAAGGCC
GACTGCTAAGGGTGACATCTTGCGGTCAGATGCAAGTGCAGCGCTAAATGTCGGTGTTCT
CCATCTTGTACCCACATTGGATGTATTTCCATTGTTGGAAGATCCAAAGACGTATGAACC
AAACACAATTGATCTTGACCAGGATGAGTTCAAGTACTGGTTCAAGATTTTGTCAGATCA
TTCGCCGGACCTCGTGGACAAGGCAGTTGCTAGTGAAGGTGGGACTGATGATGCCAAAAG
ACGGGGTGATGCATTTGCACATGCCTTTTCTGCTCATCTGGCAAGATTGATGGAGGAGCC
AGCTGCTTATGGAAAGTTTGGTTTGGCCAACCTGTTGGAATTGAGAGAAGAATGTCTGAG
GGAATTTCAGTTCGTTGATGCATATATTAGCATCAAGCAAAGGGAAAATGAAGCTTCACT
GGCTGTTTTACCGGATCTTCTGATGGAACTTGATAGTATGAATGAGGAAGCTAGGCTGCT
TGCACTAATTGAAGGTGTCCTTGCTGCAAATATATTTGATTGGGGGTCTCGAGCTTGTGT
AGAACTTTATCACAAGGGAACTATAATAGAAATCTATCGCATGAGTCGCAAGAAGATGCA
ACGTCCTTGGCGGATTGATGACTTTGACATGTTCAAAAAGAGAATGCTTACTGATAGGAA
GGACCAATCATACAAAAGAGCACTGCTTTTTGTTGATAACTCAGGTGCTGATGTGGTCCT
TGGAATGCTTCCTTTAGCTAGGGAGCTTTTACGCCATGGAACAGAGGTAGTTCTTGTTGC
AAATTCGTTGCCGGCTTTGAATGATGTTACCGCTAATGAACTTCCAGAAGTTATAGCTGA
AGCCTCAAAGCACTGTGGTATCCTTCGGAAAGCTGCAGAAGCTGGTGGATTGATAGTCGA
TGCAATGGCTGGCATCCAAGATGATCTCAAGGATGAGACAGTGTCAGTGCCACTAATGGT
TGTTGAGAATGGATGCGGCAGTCCATGTATTGATTTCCGGCAGGTTAGCTCAGAGCTTGC
TGCTGCTGCAAAGGATGCAGATTTGTTAATTTTAGAAGGCATGGGGCGATCACTGCATAC
CAACCTCAATGCCCGTTTTAAGTGTGATGCTCTAAAGCTTGCTATGGTCAAGAATCAGCG
ATTGGCAGAAAAACTCTTCAATGGGAGTCTATACGACTGCATCTGTAAATTTGAACCAGT
TCCTTAACAACATGGTAGCGACTGCGGAGGGCTTGCAGCAACTAGCAGAAGCAGCTTGAT
TGGTGTAGCCGGTGAGACAGAAACAATCATACAGCGTACGGCATAACCGATCCTTCCATG
TACGGGGTACAAGAAACGCCCTTTCAATAAAACAATAACAGTGTTTTCTGAAACGATATA
ATAAAGGCTCTAAAGGCTCTTTCC