Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d021201_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:7:145827021:145831069:1 gene:Zm00001d021201 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxymethylglutaryl-CoA synthase
Sequence

ATGGACCGCAAGGATGTCGGGATCCTCGCCATGGACATCTACTTCCCGCCCTCCTGCGTG
CAGCAGGAAGCACTTGAGGCCCATGATGGGGCGAGCAAAGGCAAGTACACCATTGGGCTT
GGGCAAGATTGCATGGCCTTTTGCAGCGAGGTGGAGGATGTCATCTCAATGAGTTTGACG
GTTGTCAATTCTCTGCTGAAAAAATACAAGATTGATCCCAAGCTAATTGGTCGCTTGGAG
GTGGGAAGTGAAACAGTTATAGACAAAAGCAAATCCATCAAAACTTGGCTGATGCAGATT
TTTGAGAAAACACAATTGCTTTCTGACATCTCTATTGACTATTGTGATGCTCAGGTTTAT
GCGGAAGGACCAGCTCGTCCAACAGGAGGTGCTGCTGCTATAGCAATGCTCATTGGTCCT
AATGCTCCGATTTCCTTCGAGAGCAAATATAGAGCTTCTCATATGGCTCATGTTTATGAT
TTCTACAAACCTGATCTTGCAAGTGAATATCCGAGTCCAGACCCTAGTGAATGTTTCTGG
TTATCCATCTCAGAGTTCAACATTTTTACAACAGCACCTTTATTCCAGGTTGTTGATGGT
AAATTATCCCAAACATGCTACCTGATGGCTCTTGACTCATGCTACAGACAGTTCTGCAAC
AAGTATGAGAAGATTGCGGGTAAACAATTCTCAATTTCAGATGCAGAATATTTTGTGTTC
CATTCTCCATACAACAAGCTCGTGCAGAAGAGTTTTGCTCGACTTTACTACAATGACTTC
ATGCGCAACTGCAGCTATGTTGATGATGATGCTAAAGAGAAGCTCCAGTCCTTTTCAAAT
TTGACTGGTGAAGAGAGCTACCAGAGTCGCGACTTGGAAAAGGCCTCACAACAGGTCGCA
AAGCACCTGTATGGCATCAAAGTTCAGCCAACGACTCTGCTTCCGAAACAGATCGGCAAC
ATGTATACGGCATCCCTTTATGCTGCATTGGCATCTGTGCTATATAACAAGCATGATAGT
CTGAATGGACAAAGAATTGTGATGTTCTCTTACGGCAGCGGCTTGACATCCACTATGTTT
TCGTTGAGGCTAAACAATGGCCAGCATCCCTTCAGTCTATCAAACATAGGTTCAGTTCTT
GGTGTCACCGAGAAGCTTCAGTCAAGACATGAGACCTTGCCTGAGAAATTCGTTGAGACG
CTGAAGCTGATGGAACACCGATACGGCGCAAAAGACTTCGAGACGAGCAGCGACACGAGT
CTCCTGCAGCCGGGCACATTCTACCTCACCAAGGTGGACTCCATGTACCGGAGGTTCTAT
TCCCAGAAGCCGGCCGAGGAAATAGGCGGCGGTAAAACCAAGTGCTGCAACGGCTTCGCA
AATGGCCACTAG

Peptide Sequence

PEP ID

Zm00001d021201_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:7:145827021:145831069:1 gene:Zm00001d021201 transcript:Zm00001d021201_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxymethylglutaryl-CoA synthase
Sequence

MDRKDVGILAMDIYFPPSCVQQEALEAHDGASKGKYTIGLGQDCMAFCSEVEDVISMSLT
VVNSLLKKYKIDPKLIGRLEVGSETVIDKSKSIKTWLMQIFEKTQLLSDISIDYCDAQVY
AEGPARPTGGAAAIAMLIGPNAPISFESKYRASHMAHVYDFYKPDLASEYPSPDPSECFW
LSISEFNIFTTAPLFQVVDGKLSQTCYLMALDSCYRQFCNKYEKIAGKQFSISDAEYFVF
HSPYNKLVQKSFARLYYNDFMRNCSYVDDDAKEKLQSFSNLTGEESYQSRDLEKASQQVA
KHLYGIKVQPTTLLPKQIGNMYTASLYAALASVLYNKHDSLNGQRIVMFSYGSGLTSTMF
SLRLNNGQHPFSLSNIGSVLGVTEKLQSRHETLPEKFVETLKLMEHRYGAKDFETSSDTS
LLQPGTFYLTKVDSMYRRFYSQKPAEEIGGGKTKCCNGFANGH

Transcript Sequence

Transcript ID

Zm00001d021201_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:145827021:145831069:1 gene:Zm00001d021201 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxymethylglutaryl-CoA synthase
Sequence

AAGAGTAGGCGCCTCGAGGCGTTTGTCGTGTCTGTGTCTGAGTGTCTCTCACGTGCCGTG
CCGGAATCTCGCATCGATCCAGCAGATGTGACAACCACCGCGCCGAGCGCGAGCTGAGCT
GACGACGCTGACGCGGCTGAAAATTTCCACGAACACATAGATCCGCATCGTCGATCCATC
CGTCCTCCTCCCGACGGTACGCCAGCCTGCCAGAGTCCGACGCACGCCTAGGGCTCCTGG
ACACAGCAGAGCCCACGCCTTGACTCGCTCCGTTCGAGTGGAGCGCACAGGCACCGGCCG
GCGACCAGAGAGGGAGCGGATCGAGGGGGCTCGGCTTGAGTGGAGGAGATGGACCGCAAG
GATGTCGGGATCCTCGCCATGGACATCTACTTCCCGCCCTCCTGCGTGCAGCAGGAAGCA
CTTGAGGCCCATGATGGGGCGAGCAAAGGCAAGTACACCATTGGGCTTGGGCAAGATTGC
ATGGCCTTTTGCAGCGAGGTGGAGGATGTCATCTCAATGAGTTTGACGGTTGTCAATTCT
CTGCTGAAAAAATACAAGATTGATCCCAAGCTAATTGGTCGCTTGGAGGTGGGAAGTGAA
ACAGTTATAGACAAAAGCAAATCCATCAAAACTTGGCTGATGCAGATTTTTGAGAAAACA
CAATTGCTTTCTGACATCTCTATTGACTATTGTGATGCTCAGGTTTATGCGGAAGGACCA
GCTCGTCCAACAGGAGGTGCTGCTGCTATAGCAATGCTCATTGGTCCTAATGCTCCGATT
TCCTTCGAGAGCAAATATAGAGCTTCTCATATGGCTCATGTTTATGATTTCTACAAACCT
GATCTTGCAAGTGAATATCCGAGTCCAGACCCTAGTGAATGTTTCTGGTTATCCATCTCA
GAGTTCAACATTTTTACAACAGCACCTTTATTCCAGGTTGTTGATGGTAAATTATCCCAA
ACATGCTACCTGATGGCTCTTGACTCATGCTACAGACAGTTCTGCAACAAGTATGAGAAG
ATTGCGGGTAAACAATTCTCAATTTCAGATGCAGAATATTTTGTGTTCCATTCTCCATAC
AACAAGCTCGTGCAGAAGAGTTTTGCTCGACTTTACTACAATGACTTCATGCGCAACTGC
AGCTATGTTGATGATGATGCTAAAGAGAAGCTCCAGTCCTTTTCAAATTTGACTGGTGAA
GAGAGCTACCAGAGTCGCGACTTGGAAAAGGCCTCACAACAGGTCGCAAAGCACCTGTAT
GGCATCAAAGTTCAGCCAACGACTCTGCTTCCGAAACAGATCGGCAACATGTATACGGCA
TCCCTTTATGCTGCATTGGCATCTGTGCTATATAACAAGCATGATAGTCTGAATGGACAA
AGAATTGTGATGTTCTCTTACGGCAGCGGCTTGACATCCACTATGTTTTCGTTGAGGCTA
AACAATGGCCAGCATCCCTTCAGTCTATCAAACATAGGTTCAGTTCTTGGTGTCACCGAG
AAGCTTCAGTCAAGACATGAGACCTTGCCTGAGAAATTCGTTGAGACGCTGAAGCTGATG
GAACACCGATACGGCGCAAAAGACTTCGAGACGAGCAGCGACACGAGTCTCCTGCAGCCG
GGCACATTCTACCTCACCAAGGTGGACTCCATGTACCGGAGGTTCTATTCCCAGAAGCCG
GCCGAGGAAATAGGCGGCGGTAAAACCAAGTGCTGCAACGGCTTCGCAAATGGCCACTAG
TGGTCGCCCTTCTGTACTGTTGATCATCATTCTCTGTGTTTTGATCATGCTTGTGGTTAG
CGTTTTCACCCTAGGGTGTTTCTGAAATAATATATTACTAGATATATCCCCATCTGTTAC
ACCGGGGTCACGAATTTTGCCATTTAGGCCTTCTCTATTTTTCTTTAGTTATTTATTGAC
TCTCTAATCTTTTTTTATCTACAAAGCCAACATATCTTACAATTTAGTTTAGAACGGATG
GTTATAATTTAGAACAAACAAAAACCAAAACATCTTACAAAT