Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d021145_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:7:144091963:144096495:1 gene:Zm00001d021145 gene_biotype:protein_coding transcript_biotype:protein_coding description:Bromodomain protein 103

Sequence

ATGCATAAGCGCCCTCGTTTCTCTTTGCCAGATGATTCAGATGATTCCCTTCTTGTGGAT
GAGCCGGACGAGGGCCCATCCATGCCATGGATGCGCAGTGGGAGGGGAAGTATGCCATGG
TTGATGGGTGGGTTGGACATGCATAGTCCAGCAGCATGGGGCCTGAGTGTTGGAGCATCT
GGTTGGGGTCATCAGGGTGACACTTCTACTTCACTCATGCCTGGGGTGCAAACTGCTGGA
CCAAGTTCTAAGGGAGGAGCCGACATTCAACCTCTGCAGGTTGACGAGAATGTGAGCTTT
AAAGATATAGGTGGACTTTCGGAGTACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCA
TTATTGTATCCAGATTTTTTTGCAAACTATCACATCACTCCTCCCAGAGGTGTTCTGCTT
TGTGGCCCACCAGGCACAGGAAAAACATTGATTGCCCGTGCCTTAGCCTGTGCTGCCTCT
AAAGCTGGCCAGAAGGTCAGTTTTTATATGCGCAAAGGAGCTGATGTTCTTAGTAAATGG
GTGGGTGAGGCTGAAAGGCAGCTAAAGTTACTTTTTGAGGAAGCTCAAAAGAATCAGCCG
TCAATTATATTTTTTGATGAAATAGATGGCCTGGCACCTGTGAGGTCTAGCAAGCAAGAG
CAGATTCACAATTCAATTGTTTCGACATTGCTTGCTTTGATGGATGGCCTTGATTCACGT
GGGCAAGTTGTTTTGATTGGAGCAACTAACAGAATTGATGCCATTGATGGAGCATTGCGT
AGACCTGGCCGATTTGATCGTGAGTTTTATTTTCCTTTACCTGGCTATGAGGCTCGAGCA
GAAATACTGGATATTCATACAAGGAAATGGAAGGATCCTCCACCGAAGGAACTAAAGATG
GAACTTGCTGCTAGCTGTGTGGGCTATTGTGGAGCTGATTTGAAGGCATTATGTACAGAA
GCAGCTATTAGAGCATTTAGAGAGAAGTATCCTCAGGTCTACACTAGTGATGACAAGTTT
GTCATTGATGTTGATTCGGTCAGTGTCGAGAAGTACCACTTTTTGGAAGCTATGTCTACA
ATAACTCCTGCTGCTCACAGGGGATCTATTGTGCATTCAAGGCCACTTTCAACAGTTATC
GCTCCATGTCTGAAGAGTCATCTTGAGAAAATAATGGAACATATTTCTGATATTTTCCCT
TTCCTTTCATCCATAGATTTTAGCAAGTTCTCTGCTCTCTCCTATGGATCTTCCATCCCT
CTTGTTTATAGACCTCGCCTTTTGATATGTGGTGGTGAAAGTGTCGGACTGGATCATGTG
GGACCAGCTGTTTTGCATGAGCTTGAGAAGTTCTCTGTTCACTCTTTGGGACTGCCGTCT
CTTCTCTCTGATCCAAGTGCGAAGACACCTGAAGAAGCTCTTGTGCATATCTTTGGGGAA
GCCAAGAGAACAACCCCGTCCATTCTATACATACCTCAGTTCCATCTTTGGTGGGATACG
GCACACGAACAACTAAGGGCTGTGTTGTTGACTCTGTTGAACGAGTTGCCCTCCAACCTT
CCAGTTTTATTGCTTGGAACATCATCAGTGGTTTTTACTGACCTTGAAGAAGAGTGTGCT
TCCATATTCTCTTCTCGCAATGTGTATCAAGTGGATCAACCAAGTTTTGACGATAGATTG
AGGTACTTCAGTATATTGTTTGAGTCATTGCTCTCTTTCCAAATGGAAGAATCAAGAAAC
AAGTCAAAGAAACAGAAGTCTGCTATTGACCTTCCCAAAGCCCCGAAAGAAGTGGAGGGC
CCTAAGGTTTCTGAGCTAAAGGCTAGGGCAGAAGCTGAGCAGCATGCTGTTCGTCGAATG
AGGATGTGCCTCCGAGATATCTGTAATCGCATTTTGTACAACAAAAGGTTCAATGTATTT
CACTTCCCAGTATTAGAAGATGAGGTGCCTGACTATCGATCAATAATCCACAAGCCTATG
GATATGGCTACTGTCTTGCAGCGGGTGGACTCTGGACAGTACCTTACCAGGGCAGCATTT
ATAAAGGATATTGATCTTATTGTCTCAAACGCAAAGACTTACAACGGGGATGACTACAAT
GGATCTAGGATTGTCAGTAGAGCATGTGAACTCAGAGATGTGGTCCAAGGCATGTTGTCA
CAAATGGACCCATCTTTGGTGTCCTTCTGTGATAAAATTGCTTCACAAGGGGGGCCACTG
CAGGCTGTGGATGATGAAGATAGAGCTATTCTTCAAGCAGCACCTGTTGCTCAGCTGGTT
TCTGGTACTAGAATAAGTGCAAGGCTTCGAAATGTACAGCCTGAAGTAAACCTGTCACAA
AGTTATGAAGTGCTAAGGCGGCAAAAGAAAAGTGCAGAAAATGAACAAAGTCAGTTTTAC
GATCTGAACTATAACACTTGCATTTGCTTGTTAACTGTGATTGCAATGATTATGGAAAAT
ATTGAACTGTCGTTTCAGGCATGA

Peptide Sequence

PEP ID

Zm00001d021145_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:7:144091963:144096495:1 gene:Zm00001d021145 transcript:Zm00001d021145_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:Bromodomain protein 103

Sequence

MHKRPRFSLPDDSDDSLLVDEPDEGPSMPWMRSGRGSMPWLMGGLDMHSPAAWGLSVGAS
GWGHQGDTSTSLMPGVQTAGPSSKGGADIQPLQVDENVSFKDIGGLSEYIDALKEMVFFP
LLYPDFFANYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKW
VGEAERQLKLLFEEAQKNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSR
GQVVLIGATNRIDAIDGALRRPGRFDREFYFPLPGYEARAEILDIHTRKWKDPPPKELKM
ELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFVIDVDSVSVEKYHFLEAMST
ITPAAHRGSIVHSRPLSTVIAPCLKSHLEKIMEHISDIFPFLSSIDFSKFSALSYGSSIP
LVYRPRLLICGGESVGLDHVGPAVLHELEKFSVHSLGLPSLLSDPSAKTPEEALVHIFGE
AKRTTPSILYIPQFHLWWDTAHEQLRAVLLTLLNELPSNLPVLLLGTSSVVFTDLEEECA
SIFSSRNVYQVDQPSFDDRLRYFSILFESLLSFQMEESRNKSKKQKSAIDLPKAPKEVEG
PKVSELKARAEAEQHAVRRMRMCLRDICNRILYNKRFNVFHFPVLEDEVPDYRSIIHKPM
DMATVLQRVDSGQYLTRAAFIKDIDLIVSNAKTYNGDDYNGSRIVSRACELRDVVQGMLS
QMDPSLVSFCDKIASQGGPLQAVDDEDRAILQAAPVAQLVSGTRISARLRNVQPEVNLSQ
SYEVLRRQKKSAENEQSQFYDLNYNTCICLLTVIAMIMENIELSFQA

Transcript Sequence

Transcript ID

Zm00001d021145_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:144091963:144096495:1 gene:Zm00001d021145 gene_biotype:protein_coding transcript_biotype:protein_coding description:Bromodomain protein 103

Sequence

ACCAAAGCGCCAGAAGTTGTCTAACTCCATACCTCGTCGTGAAGGTTTACGGCCTAGAAG
ATCTTTGCGAGGACAAAGACTGCATCCATACCATGAATCTGAGGATGACCAGGAAAGCTC
TGATGAACAAGGTGCAGAAGATCAAAGAGAAAATGGCAATGAGATTGAAGAGGATGTTGG
TGATGAGGAGGAGGTTGATGGAGGTGATGAAGCTGAAGGAGATGGAGATGACGAAGATGG
TGAGGAAGAGCAAGAAGGAAGGAGGAGATATGATTTAAGGGAACGTTCAGAGGTTCGTAG
ACCATCCCCTCGTAAGGAAGGAAAGCACAGACCACAATCTCCTCGTAGAGTACTAGTTCA
CGGAATTGGTCCAAAGAACAGCAAGTATTTAAAAAAAGGTGGGTCGCGCATGCATAAGCG
CCCTCGTTTCTCTTTGCCAGATGATTCAGATGATTCCCTTCTTGTGGATGAGCCGGACGA
GGGCCCATCCATGCCATGGATGCGCAGTGGGAGGGGAAGTATGCCATGGTTGATGGGTGG
GTTGGACATGCATAGTCCAGCAGCATGGGGCCTGAGTGTTGGAGCATCTGGTTGGGGTCA
TCAGGGTGACACTTCTACTTCACTCATGCCTGGGGTGCAAACTGCTGGACCAAGTTCTAA
GGGAGGAGCCGACATTCAACCTCTGCAGGTTGACGAGAATGTGAGCTTTAAAGATATAGG
TGGACTTTCGGAGTACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTGTATCC
AGATTTTTTTGCAAACTATCACATCACTCCTCCCAGAGGTGTTCTGCTTTGTGGCCCACC
AGGCACAGGAAAAACATTGATTGCCCGTGCCTTAGCCTGTGCTGCCTCTAAAGCTGGCCA
GAAGGTCAGTTTTTATATGCGCAAAGGAGCTGATGTTCTTAGTAAATGGGTGGGTGAGGC
TGAAAGGCAGCTAAAGTTACTTTTTGAGGAAGCTCAAAAGAATCAGCCGTCAATTATATT
TTTTGATGAAATAGATGGCCTGGCACCTGTGAGGTCTAGCAAGCAAGAGCAGATTCACAA
TTCAATTGTTTCGACATTGCTTGCTTTGATGGATGGCCTTGATTCACGTGGGCAAGTTGT
TTTGATTGGAGCAACTAACAGAATTGATGCCATTGATGGAGCATTGCGTAGACCTGGCCG
ATTTGATCGTGAGTTTTATTTTCCTTTACCTGGCTATGAGGCTCGAGCAGAAATACTGGA
TATTCATACAAGGAAATGGAAGGATCCTCCACCGAAGGAACTAAAGATGGAACTTGCTGC
TAGCTGTGTGGGCTATTGTGGAGCTGATTTGAAGGCATTATGTACAGAAGCAGCTATTAG
AGCATTTAGAGAGAAGTATCCTCAGGTCTACACTAGTGATGACAAGTTTGTCATTGATGT
TGATTCGGTCAGTGTCGAGAAGTACCACTTTTTGGAAGCTATGTCTACAATAACTCCTGC
TGCTCACAGGGGATCTATTGTGCATTCAAGGCCACTTTCAACAGTTATCGCTCCATGTCT
GAAGAGTCATCTTGAGAAAATAATGGAACATATTTCTGATATTTTCCCTTTCCTTTCATC
CATAGATTTTAGCAAGTTCTCTGCTCTCTCCTATGGATCTTCCATCCCTCTTGTTTATAG
ACCTCGCCTTTTGATATGTGGTGGTGAAAGTGTCGGACTGGATCATGTGGGACCAGCTGT
TTTGCATGAGCTTGAGAAGTTCTCTGTTCACTCTTTGGGACTGCCGTCTCTTCTCTCTGA
TCCAAGTGCGAAGACACCTGAAGAAGCTCTTGTGCATATCTTTGGGGAAGCCAAGAGAAC
AACCCCGTCCATTCTATACATACCTCAGTTCCATCTTTGGTGGGATACGGCACACGAACA
ACTAAGGGCTGTGTTGTTGACTCTGTTGAACGAGTTGCCCTCCAACCTTCCAGTTTTATT
GCTTGGAACATCATCAGTGGTTTTTACTGACCTTGAAGAAGAGTGTGCTTCCATATTCTC
TTCTCGCAATGTGTATCAAGTGGATCAACCAAGTTTTGACGATAGATTGAGGTACTTCAG
TATATTGTTTGAGTCATTGCTCTCTTTCCAAATGGAAGAATCAAGAAACAAGTCAAAGAA
ACAGAAGTCTGCTATTGACCTTCCCAAAGCCCCGAAAGAAGTGGAGGGCCCTAAGGTTTC
TGAGCTAAAGGCTAGGGCAGAAGCTGAGCAGCATGCTGTTCGTCGAATGAGGATGTGCCT
CCGAGATATCTGTAATCGCATTTTGTACAACAAAAGGTTCAATGTATTTCACTTCCCAGT
ATTAGAAGATGAGGTGCCTGACTATCGATCAATAATCCACAAGCCTATGGATATGGCTAC
TGTCTTGCAGCGGGTGGACTCTGGACAGTACCTTACCAGGGCAGCATTTATAAAGGATAT
TGATCTTATTGTCTCAAACGCAAAGACTTACAACGGGGATGACTACAATGGATCTAGGAT
TGTCAGTAGAGCATGTGAACTCAGAGATGTGGTCCAAGGCATGTTGTCACAAATGGACCC
ATCTTTGGTGTCCTTCTGTGATAAAATTGCTTCACAAGGGGGGCCACTGCAGGCTGTGGA
TGATGAAGATAGAGCTATTCTTCAAGCAGCACCTGTTGCTCAGCTGGTTTCTGGTACTAG
AATAAGTGCAAGGCTTCGAAATGTACAGCCTGAAGTAAACCTGTCACAAAGTTATGAAGT
GCTAAGGCGGCAAAAGAAAAGTGCAGAAAATGAACAAAGTCAGTTTTACGATCTGAACTA
TAACACTTGCATTTGCTTGTTAACTGTGATTGCAATGATTATGGAAAATATTGAACTGTC
GTTTCAGGCATGACTAGAGATGAAAAGTCTCCTGAAGATGTAGATTTGTCGAAGCCAACT
GACGCAGAAGAAGCTGCAAAAGAACCAGAGTCAAATGGCACTACGAAAGAAGCCAACGAT
TCACCAGCCAAAGAACCAGAAGTATCTACTTCCCCTGAACCCATGGAGAGTGACAACGGC
AAAATTGCCGCGGCTACTGGCGACGACTTGTTAGAACAGCTAGAAGCCCTGAAGCAACGC
TTCATGGAACTCACTGCAAGCTATGGCGTGCCGCAGCTCGAGAGGCTGTATTCCAAGATA
ATGAAAGGAGCAATAGAGTTGACAAGTAAAGAAAGCAACGAGGATCATAGGCGGTTAGTA
GTTAGGTATTTGTGGACATTCGTTGAGAACAGCAACAATTTTTAACCTGGCGCCAATAAG
ATTCTTGTTTTCCTTGTACATCCTCTTTGGAACGAAACAATAGTAGCCGTTCATCTTGGG
AGTTGTCCCCGTTCCATGCCTTGTAACAAATCTTCCAAATGCTCTAGTGTCAGTGACACA
GTTTTGCCATGAAATGATGTAGCAAGTGAACCCTTCCTAGATTTGTACCTCAGTTTGATG
AATTTATGAGGTGGAATTCCCTCTTAAT