Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d020965_T016
CDS Infomation

cds chromosome:B73_RefGen_v4:7:138116928:138122918:1 gene:Zm00001d020965 gene_biotype:protein_coding transcript_biotype:protein_coding description:Proton pump-interactor 1
Sequence

ATGACGTGTTTTTGCTGTGGCGTGCAGGATCGGGGCGCGATCCGCGGGGAAACAGCAATG
ACGGCGGAGGGGACGGCGTGCAACGGCGCCGGCGAGGCGCCGAAGGCGGAATTCGTGCCC
GAGAAGGTGGTCACCGCGTCGCTGGAGGAGAAGGCGGCCGGGGAGCGCGAGGGCGAGGAC
GTCGGCGGGCCTTTTGTGGTCGTGAACGGCGGCGATTCTGACGGGCACTCCGACCGTGGC
TCAGATCTGGGCAAGGCGTCCGGCGAGGAGTCGTCGTCCGAGGAGGAGGACGTGCCCGGC
TCCAATGTAGCTCCGGACTTGGCCGTGGGCGGAGATCACGGGTCCGCCCGAGGGGAAGTG
AGTGCTCAGGGTGCGGCACTCGGTGCTTCGTCGGCGGACGGCAGTGGTCGTGCTTCCGAC
GGCGCTGAGGGTGGCGCGGATGAGGGCAAAGGCGAACCAAGTTCCGATTTTGATGCTGAA
GCGGCGCCGCAGGAGGACGTTGGTGAAGAGGACGGTGGGGCAGCTGCTCTGGCGTCCAGC
GGGTGCGAACCTGCCATCACCGGTGCTGATTCTGAGGCGGCACCAGCTGTGGATGATGAG
GTTGAAGGCAAGGAGGGCACGGTGGATGGAAGTGCTGTTGCTGATGTCGCTGAAGCGGTG
GTGCATCAGGAAGTTAGCACAGAGCATGATGATGCCCTAACGCTTCCCAAGTCTTCTGCT
TCCATGGAGTCCGAGGTTATTAGAGAGGATAACAAAGAACAGAGCACCGCTGATATTGTG
GGGCCACATGAGCAGGGTACATGTGGGGCAAGTGCTTTGGTGGAGAATGAGCATCTTTGT
GCTGACATGAGGGCTGATTCATTTGTAGCTGTTACTGAGCCTGACAGTCAAGAGGATTAT
GCTGTGGAGTCCTGCATGCGCGATGATGTCCTAATTTGTACCGAGTCTGGTTCTGCCGAC
ATCGAGTCTGAGGTTAATGGAAAGGATAGCAAACAAGAACAGAGCAATGCTGATGTCGTG
GAGGTCATAGGGCAGGGTGTAGTTAGGGCAGATGCGCTGATGGCAAATGGGCATCTTTGT
GCCGACATCCAAGCAGATTCTTCTGAAGCTGCTACTAAGCCTGATAACATTGCTAATGAG
AGCAAACTGACTGAAGTTGCAGAATCAGGAGAGGATGCTGCTGCCAGTGGAGAACTGGAT
GCCATCGATGCATCATCACAAACCAATGGGCATATTTATGTTGCCTCGGGTGCTGATTCT
TTTATAATTGCTTCTGAGTCCAAGTCTCATTCCTTTGAGACGGATGGACAAGAAACTGAT
CAGCAAGAAGAGGAAGTTCCACAAACTGAAGCTGAACTATTGGATGGAGTGCTAAAACCA
ACTGAAAGGAACTGTGCACGCAGTGTTGAGGAACTCATAGGAGAGGAAGTTGACACAGAT
GGGCATCCCAGTGTAGACGGTACAGCTGATGCTTCTGGGGAGCAAGAAGCCAAGCCCATG
CAGGTAGAAGGTGAGGCCACATGTGGTATTCTCGAATTTGAAGAAGTGGATAAGGATGGT
GAGGATAGTTTGTGTAATGACTGCATGGTTGGTGTTGTTTCCTCTAATGAGGAAACAGAG
CTTCCTATGAAGGAAAGAACAGATGAAGCTGTCCCCAGTGTTAATGTTGGCGAGTCAGAG
CAAGTAACTGAGGATACAAGCCAAGATATCATGCAGGGTGGATTGGCCAGGGGAGTTTTT
ATAGGCACAATTTTTGTTAAGCCAGTATCAGATCCTCATGTTGAATCAAGCCTCGTACAT
AAAGTCAAGGCAGAAGTTCATTTAGTTGATGAAATCACAGCAGCAGATTTGAAAGCTGAA
AATATGGTCGAAGTGAAAAGAACAGATCGTGAAGTTGACGAAATAGAGGTAAAAGCGCCA
GGTACTCACGAAATTGGGAATTCTTCAGAAGTAGAACCGAAGGAAGAGTTTGAGATGGAG
GTTGATGATGCTGTTTCATTGCATGAAGCTGCAGCTTCTGCATCAGAAAATGGTTCTGAA
GAAAAATCTAGCAACATTGCTGTTGATCAAGTTGAACCTGTCAACCTGAATGTAGATGAA
CTCGCGGTAGATGATGATCAACCCAGTTTTAATCCAGGTTATGGATCTGCTAAATCTTCT
GATGTGGCCGAAACAAAAAATGTGGAAGGTATCTGA

Peptide Sequence

PEP ID

Zm00001d020965_P016
PEP Infomation

pep chromosome:B73_RefGen_v4:7:138116928:138122918:1 gene:Zm00001d020965 transcript:Zm00001d020965_T016 gene_biotype:protein_coding transcript_biotype:protein_coding description:Proton pump-interactor 1
Sequence

MTCFCCGVQDRGAIRGETAMTAEGTACNGAGEAPKAEFVPEKVVTASLEEKAAGEREGED
VGGPFVVVNGGDSDGHSDRGSDLGKASGEESSSEEEDVPGSNVAPDLAVGGDHGSARGEV
SAQGAALGASSADGSGRASDGAEGGADEGKGEPSSDFDAEAAPQEDVGEEDGGAAALASS
GCEPAITGADSEAAPAVDDEVEGKEGTVDGSAVADVAEAVVHQEVSTEHDDALTLPKSSA
SMESEVIREDNKEQSTADIVGPHEQGTCGASALVENEHLCADMRADSFVAVTEPDSQEDY
AVESCMRDDVLICTESGSADIESEVNGKDSKQEQSNADVVEVIGQGVVRADALMANGHLC
ADIQADSSEAATKPDNIANESKLTEVAESGEDAAASGELDAIDASSQTNGHIYVASGADS
FIIASESKSHSFETDGQETDQQEEEVPQTEAELLDGVLKPTERNCARSVEELIGEEVDTD
GHPSVDGTADASGEQEAKPMQVEGEATCGILEFEEVDKDGEDSLCNDCMVGVVSSNEETE
LPMKERTDEAVPSVNVGESEQVTEDTSQDIMQGGLARGVFIGTIFVKPVSDPHVESSLVH
KVKAEVHLVDEITAADLKAENMVEVKRTDREVDEIEVKAPGTHEIGNSSEVEPKEEFEME
VDDAVSLHEAAASASENGSEEKSSNIAVDQVEPVNLNVDELAVDDDQPSFNPGYGSAKSS
DVAETKNVEGI

Transcript Sequence

Transcript ID

Zm00001d020965_T016
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:138116928:138122918:1 gene:Zm00001d020965 gene_biotype:protein_coding transcript_biotype:protein_coding description:Proton pump-interactor 1
Sequence

AGAGACAGATCCATCTCTCACCTCGCCCCACCGCCCTCGCCGATCGGGGTCCGCCGACCC
CCAGATCGCTTCTTCGCTTCGGTAGGTGGCCGAGTGTACGCGTACGAGGAGCCTCCCGGA
TCCCGCCTCGCCGTCGTCTGTAAGATCTTCTCGCACATCTCGATCTCTCTATTGGAGCTT
TGGGTTTCGTCTGTCTGTCTGTCTGTCTCTCTCTTTGCGAGGTTTGGGTTTTGTGTCGTG
GAGCGGTGGAGGTGCCGTGGGAGCCTTTGGTTAATCCAGGGTGATCTCTGATCTGCGATC
TGTGTTGGGGCGTATGGCTCTGGCGTCTTAACAGATGACGTGTTTTTGCTGTGGCGTGCA
GGATCGGGGCGCGATCCGCGGGGAAACAGCAATGACGGCGGAGGGGACGGCGTGCAACGG
CGCCGGCGAGGCGCCGAAGGCGGAATTCGTGCCCGAGAAGGTGGTCACCGCGTCGCTGGA
GGAGAAGGCGGCCGGGGAGCGCGAGGGCGAGGACGTCGGCGGGCCTTTTGTGGTCGTGAA
CGGCGGCGATTCTGACGGGCACTCCGACCGTGGCTCAGATCTGGGCAAGGCGTCCGGCGA
GGAGTCGTCGTCCGAGGAGGAGGACGTGCCCGGCTCCAATGTAGCTCCGGACTTGGCCGT
GGGCGGAGATCACGGGTCCGCCCGAGGGGAAGTGAGTGCTCAGGGTGCGGCACTCGGTGC
TTCGTCGGCGGACGGCAGTGGTCGTGCTTCCGACGGCGCTGAGGGTGGCGCGGATGAGGG
CAAAGGCGAACCAAGTTCCGATTTTGATGCTGAAGCGGCGCCGCAGGAGGACGTTGGTGA
AGAGGACGGTGGGGCAGCTGCTCTGGCGTCCAGCGGGTGCGAACCTGCCATCACCGGTGC
TGATTCTGAGGCGGCACCAGCTGTGGATGATGAGGTTGAAGGCAAGGAGGGCACGGTGGA
TGGAAGTGCTGTTGCTGATGTCGCTGAAGCGGTGGTGCATCAGGAAGTTAGCACAGAGCA
TGATGATGCCCTAACGCTTCCCAAGTCTTCTGCTTCCATGGAGTCCGAGGTTATTAGAGA
GGATAACAAAGAACAGAGCACCGCTGATATTGTGGGGCCACATGAGCAGGGTACATGTGG
GGCAAGTGCTTTGGTGGAGAATGAGCATCTTTGTGCTGACATGAGGGCTGATTCATTTGT
AGCTGTTACTGAGCCTGACAGTCAAGAGGATTATGCTGTGGAGTCCTGCATGCGCGATGA
TGTCCTAATTTGTACCGAGTCTGGTTCTGCCGACATCGAGTCTGAGGTTAATGGAAAGGA
TAGCAAACAAGAACAGAGCAATGCTGATGTCGTGGAGGTCATAGGGCAGGGTGTAGTTAG
GGCAGATGCGCTGATGGCAAATGGGCATCTTTGTGCCGACATCCAAGCAGATTCTTCTGA
AGCTGCTACTAAGCCTGATAACATTGCTAATGAGAGCAAACTGACTGAAGTTGCAGAATC
AGGAGAGGATGCTGCTGCCAGTGGAGAACTGGATGCCATCGATGCATCATCACAAACCAA
TGGGCATATTTATGTTGCCTCGGGTGCTGATTCTTTTATAATTGCTTCTGAGTCCAAGTC
TCATTCCTTTGAGACGGATGGACAAGAAACTGATCAGCAAGAAGAGGAAGTTCCACAAAC
TGAAGCTGAACTATTGGATGGAGTGCTAAAACCAACTGAAAGGAACTGTGCACGCAGTGT
TGAGGAACTCATAGGAGAGGAAGTTGACACAGATGGGCATCCCAGTGTAGACGGTACAGC
TGATGCTTCTGGGGAGCAAGAAGCCAAGCCCATGCAGGTAGAAGGTGAGGCCACATGTGG
TATTCTCGAATTTGAAGAAGTGGATAAGGATGGTGAGGATAGTTTGTGTAATGACTGCAT
GGTTGGTGTTGTTTCCTCTAATGAGGAAACAGAGCTTCCTATGAAGGAAAGAACAGATGA
AGCTGTCCCCAGTGTTAATGTTGGCGAGTCAGAGCAAGTAACTGAGGATACAAGCCAAGA
TATCATGCAGGGTGGATTGGCCAGGGGAGTTTTTATAGGCACAATTTTTGTTAAGCCAGT
ATCAGATCCTCATGTTGAATCAAGCCTCGTACATAAAGTCAAGGCAGAAGTTCATTTAGT
TGATGAAATCACAGCAGCAGATTTGAAAGCTGAAAATATGGTCGAAGTGAAAAGAACAGA
TCGTGAAGTTGACGAAATAGAGGTAAAAGCGCCAGGTACTCACGAAATTGGGAATTCTTC
AGAAGTAGAACCGAAGGAAGAGTTTGAGATGGAGGTTGATGATGCTGTTTCATTGCATGA
AGCTGCAGCTTCTGCATCAGAAAATGGTTCTGAAGAAAAATCTAGCAACATTGCTGTTGA
TCAAGTTGAACCTGTCAACCTGAATGTAGATGAACTCGCGGTAGATGATGATCAACCCAG
TTTTAATCCAGGTTATGGATCTGCTAAATCTTCTGATGTGGCCGAAACAAAAAATGTGGA
AGGTATCTGACCATTATTTTCTGGCTATCCATTTTATTTTTTTGAATTTAAATGTATTAA
TCTCCTTAAATGCTACCTATAACCCGCATGGGAGTTAAACAGTCACATTTATAATCCTTG
AGCAGCACAAGTGACAGAACAGAAGGGCAATGCACACCATGCTTCAGGTGAGTGGCATGG
AGATCATACGCAAGTCATTGGACCACAGAGGATCTACATAATTAAAGTTCCAAAATTTGC
CGGTGATGATCTCTGGGATAAGATCCAGGCTGCACAGGCTCACTTAGACCAACTGACCCA
GGAAAGAGACGCAATTAACCGCCGTAGGCAAAAACAAAAGGCTATATGTGATGAATACAG
GGAGAAGTTTGAGGCAGCACGTCAAGAAGAGCGGGAAGCAAGGGCTGCCCATGGAGATAA
GAAGAATGATTTAAACAGTGTGCGCTCAGTATTAGAGAAATTGCACCAAGCAAATTCAGT
TGAAGAACTTGATGAGCTTATTGCAAAGAAAGAGAGGATTATGCAACATGAGACCATTTC
TTTGAAAGAAGAAAAGCTTTTAATTAAAGAGATTAATGAATTAAAATCCCAACGGAAGCA
GCTGTCCGCCACCATGGGCTCAAAGGCTGAAATCAATGAGGCATTTGACCAAAAAGATCA
CATTCATGAGCGGCATAAGGTGTTAAAGAAGGATTCTGATGTTTTATTCAGCAACCTGAA
AGTCCTAGAGGAGAACACAAGAAAGATTCAAAAATCTTTTGCTGATGAAAGAACAGCTCT
CAGAAAATTAACAGAGGAACACCGAGCAGCTAATGAAATACGTCAAAAGGCCTACAGCGA
TTGGACTGAGCTTAGATCAGAGCCCAGCAAGAAGAATGAATACTTTTTCAAGTACAGGGA
CGCCCGAAATGCAGCAGAAAATTTCAGAGCCAATGGAGATATAAATGGACTTATATCACA
CTGTAATAGTCAGATTGAGAGAGTTATGGAAATATGGAACAAAAACGAGGACTTCCGCAA
GCAGTATGTTGAATCGAACAAGGTTAGCACACTAAAGAGATTAGGGACCCATGACGGACG
AAAACTTGGCCCTGGTGAGGATCCTCCGGTCATTCCAAGCCGAAGACCAAGCAACATTTG
TCCATTGTCTGCCTCAAGCCCGGAAATGATCACCTTAGCTTCAACACCAGCACCTGTATT
GGCTGCTGCAGCTGCAGTCCCTTCCAAAGAGAACTCCTTTCCTGCTTTGGCAGCCCCTCA
GACCAGTAAGCGCGCCAAATCAAAAGCATCTGGTAGCTCTGCCCAGATTAAGAACAAATC
TGTTATAGTATCAGAGGAAGAAGATTTGGAACAGACTTTAAAGGAGAAGGCTCATCAATT
GGAGTTAGCTAGGAAGGCAGAGGAGTTAGATAGGAAGGCAGAGGAGTTGGCGCGGAAGGA
GGAGGAACTAAGAAAAGAGAGGGATGCAGCTGAAAAGGAGCGGCTTAGGATGGAGCAGAA
GGCTAAGGCTAAGGAGGCTGAGGAGAGGAAGAGGCGGAAAGCAGAGAAGGACAAGGAAAG
AGCCGAGTTCAAAGCACGCAAGGAAGCTGAGGAGAGAGAGAAGAAGAAAGCAAAGAGAGA
CAAAAAGAAAGGCGCAGCACCAGCAGATTCGAGCGCCATTGGTGACAGCCATGCTGCTGC
TTCGGCTACAGCAGATACTGACAGTAATGCATCAGACAACCCAAGGGAAGCTGACGTTTC
TCAACCAGCGGTGGCTCCCAGGAGGCCGGCTAGACCAGCGGCGGCAATCAAGCAACTGAA
CAGGTTGCAGCCCATGCCAGCGCCCCTGCGTAACAGGGGCAGGAGGAAACTGCGGCAGTA
CATCCTGATCGCAGCGGCGGTGCTAACGGTGCTGGCGCTGTTCGTGGCAGGCAACTACAT
TCCCAGGCTGAGGTCGCACTCCTAATTTTATCGTTAGGAAAGGAGTGCCAGTTCTGTCGC
GGTGAACCTGGTGGTGGTTCTACCTAGAGGATTCTTCTTTTTTCGACTGTTCGGGTTGGT
TTGTATTTAGCTTCCCTTATTATAGGTTTGTGATAAAAGTTATTACCGGATGGTGGTGAA
ATATTCGTTAGAACATGATAATAATGACTATAGATTCTTTTTTG