Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d020851_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:7:134654920:134662924:1 gene:Zm00001d020851 gene_biotype:protein_coding transcript_biotype:protein_coding description:CONTAINS InterPro DOMAIN/s: Inner centromere protein ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 3 /.../urce: NCBI BLink).
Sequence	ATGGGAAGGTTGTTGCTTAATCATGTTAAGTCAAGAAATTTGAACCCTGACAGTGAACCA GTGGAGCAGCACCACAAATATACTTCAGAATGTGGCCATCCTGATCTTACTAGTATGCAT TCTCCAAATAAGAAACCATCTCTGACGTGTCCTGTTGAAGCACCGAATTCTATGGGTGAA CCATTACTTCATAAGGATACAGAACATATTCCTGAAACCAATTCTTTGGGAAGAGCATAC TCCAAGTTCAGCCAACCACTTAAAATAGATACATCAAACAGTAATGAAACCAATTGTTCT GTGGTCAACTCACTGCTTGATAATGATACATTGCAGGCCACTGAGGATACTGACAAACTG AAATCTCATGTCTCACCTCCATACAGTGGACCTTTGCAGCTACCTACCCAACTAGCTGAT GCAAGGTTTGGGGCTCATACATCACCAGGAATACTACCGAACAGTTTGTTAGGGGTGGAT GGGTGTAATCACCTTTCAAATTTGCAAAAAAATGACACAAATAGCCGTTGCTCCCGATAC AGGTCTGCTGTAAGCCTAGAGCTGCTTCCACCTCAAAATTTTATTTCCACTGATGCTTGT CAATCAAGGCTCTTGTCTTATAGAACACAAAGTAATGACAAACATTCCAGTTCTGTTGCT TCTGCTATGAATGCCTCTAAATCTGCAGATAGTAAGTTACCTCAGGAACAGTATTTATTG GTCAGACCATCTTTGGAATTTAATGGAAGTATTTCAGATGCGGAAACTCCCTTGGGCCGT TCTCCTCTGGGCATGCAAAATGAAATGCTCCAAGCAGACCCAGTATATGACTCAGCCAAT TGCTCTCCAGGAATTTTGGGTGATGATGCTCATGTCAGCAAAGCCTATGGTGGTTCTGCT GATAACAGAAAGAACATATCTGTGGTTCCGAAAGTTGGCCCCATCAGTTCATCTAGAATC AGAGATATGCAAATAACAGAAAAGAATGTGGTCGCTTCATCAGAAAAAAACAATGGAAAA CTGCAAGAAGGAAAAGCACAAGAGACCCCTCATCCTAAGGATGATGTGCAAGTAAATGCT GATTCATGCACAGCTGAAAACATTGAGAAAATGAAGTCTCCATGTACGTCAGAATCATGT GAGGAGAACAACAAGCACCAGGAGGATAGAGGACATGCTCAGAAGAAGTCAGCTGCAGAT GTCGTCCAGATCAATGGGGGTATGTCATCCAAAAGAAAACGAATGAAGTGCCAAGACATT GCATTTCCCAGTTCTCAAGACACAAATCCATTATTTCCGAACCACCAAGATGGCATTGGC ACCCATGTCGTAATTGCAGAAAAAATCTCAATGGAAATACAACCTTCTGATCCTTACATC CTAAGAAGTACAGGATTTGATGACTTCATGCTTCTCAAATCTGAGACAAAGAATGATGCA GTGAACCACAGTATTTCAGTTGCAAGTGATGTTCAACAAAACGAGAGTTCTTCTCCCAAG CTAAGAAATAGCAGGAATGTAGCTGAAGAAATGGACCTCCAAAACTATCAAGCACAGTTA CAAAATACTTTTGATGTTGCTACAAGTTCTATTATGCCTAGCAGATCTGATATTTCTCTT GATAGTGTGGAGCTCTGCAGTCAAGAGGAAAATACTTACTTAAAAGGAGAGGGTTTAAGT GTTTCTAATTCCAATGTGGAACATTCACGGATGGCTCCTCAGATGGATGAAATATTGTCT CAGAGTGTGATACTGAATCCAGCAAATTATCTCAGCACTGATTCAACAAATATATTCCTG AATTATGCCTTGGATCAACATGGTAAACATGCACCTTCTCCAGTTAAGAAATTAAGTTAT GGCTCTGGCGTAGAAGCTGATAGGAAATTTAGAAGTGAAGATCTAACAGGATGTTTGCTA TATGATGGTACTACCTCAAGGAAAAAGGATAGTGACTCTGTGAAATTTAATGATGCAATG CCACAATTTGAGAGCTTTGATTTTTCTCTTCCATTGGATAGCTCAACTACTGAAGAAAAG GCATTTGGGAGTGTTCATGATTCCATACAATTTGGTACATTTAATTCAGATCCCGCTAAT AAACATGAGATGAGTGCAGTAAGTGGCATGTATCAGCTATTGGCAACTATGTCAGGGAAA GCTACAAACTGCTTGTTTAATGATGATGAAAGGCAACCCGGTGAAAGTATTGATGGTAGT GTAACAGATATTTTTGGTTCAAGTGGATTGGGACATAAGGGTTCTTTCATTACTCCTGAT TTTGCAGCGTCATGTTCTTCAAATGCTGCGAACAAAAAGGATAATGGTGAAAATCCATTG ACCCCTTCTGTTGAAAAGTATTGTCTGGGGAAACTTTCAGAAAAAAATGGATCTGTTTCG GAGCATATGGGTTCGATTCCTGAGCTTTTATGCTTCCGAATTGATGAAGACAATGACATT GCAGAAGGAAATGATTACCGAGAGATATTACCTAGATCCATAGGCAACCAGGAGCAATCA GGAAGGAAAGCACTTCAGGATATCACTGGACTATGTCAAAGCATTGGGAATTCTGCCTCT TATTCGATAGGTATGAGTATGGATACAGGTGACACAGACATGACTGTAGAAACTTGCAGC AGTGAACTCAATCATCATCCAGATCTCAGGAATGATGGTGATAACAAGAAGCCTAAAGAA AGTTGTGGTTCTTTATTAAAAAAAGGAGGGAAAATGTCTCGCTCCCTTCATAACAGATTA AGCAAGACAGAAACAAGGCACATGAATGAAGCAAATCCTGGAAAGCGTTCTAAGCCTAGT AATATTGTTGCTAATGTGGCATCTTTTATACCTCTTGTGAAGCCAAAGGTGCAACCAACA GCATGTGTGAAAAAAGATGTTAGAGTGAAAGCACTTGAGACAGCTGAAGCTGCAAAACGT CTTGAAGAAAAGAAACGAAGTGAACGTGAAATGCGCAAAGCAGCAGCAAAACTAGAGCGT GAGAAACTGAAGCAAGAGAAAGAGTTAAAGCAAAAAGAGGAAGAGGAACAGAAGAAGAAA AGAGGTGCTGATGTGGCAACAAGGAAGAGGCAGAGGGATGAGGAGGAAAGGAGGGAGAAG GAGAGAAAAAGGAAATGCATTGAAGAAGCTCGAAAACAACAGAAGCGACCTATTGAAAGA AAACATGCCAACATTAACAATGCTCATCCAGAAGGTCATGATAATAAGGAGCTGCAGCAG AATTCGGCTGAAGCGGTGAAAGGCCCAGTAAAATTTGATGAAATGACAGGTCTTGGAGGA AATGCCACTAACAGTAACAATGAAATGGTTGTGATTACCGATGAGAGGCCTGCAATTTCT GGACCTAATTGTCAGGAAAATATCCCAAACAGTATTGAGGAGTCATACATAATGACTCCA TATAAAGATTCTGATGATGATGATGATGAGGATTTCGAACATATAGAACATTCAAGGCGT AGGAGGAAATTGGTTCCTTCATGGGCTCGGGGAGAGAACTTGGAGAAAATCTTGTTATCC AATTATGTTTTGGACCCTAGGAAAATCTTTGCACGAAAACGCTCCTCTGATCTCTCTGAA ATTTGTCCTGCCCACATACCGCAACGTGGTTTCAGATGA

Peptide Sequence

PEP ID	Zm00001d020851_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:7:134654920:134662924:1 gene:Zm00001d020851 transcript:Zm00001d020851_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:CONTAINS InterPro DOMAIN/s: Inner centromere protein ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 3 /.../urce: NCBI BLink).
Sequence	MGRLLLNHVKSRNLNPDSEPVEQHHKYTSECGHPDLTSMHSPNKKPSLTCPVEAPNSMGE PLLHKDTEHIPETNSLGRAYSKFSQPLKIDTSNSNETNCSVVNSLLDNDTLQATEDTDKL KSHVSPPYSGPLQLPTQLADARFGAHTSPGILPNSLLGVDGCNHLSNLQKNDTNSRCSRY RSAVSLELLPPQNFISTDACQSRLLSYRTQSNDKHSSSVASAMNASKSADSKLPQEQYLL VRPSLEFNGSISDAETPLGRSPLGMQNEMLQADPVYDSANCSPGILGDDAHVSKAYGGSA DNRKNISVVPKVGPISSSRIRDMQITEKNVVASSEKNNGKLQEGKAQETPHPKDDVQVNA DSCTAENIEKMKSPCTSESCEENNKHQEDRGHAQKKSAADVVQINGGMSSKRKRMKCQDI AFPSSQDTNPLFPNHQDGIGTHVVIAEKISMEIQPSDPYILRSTGFDDFMLLKSETKNDA VNHSISVASDVQQNESSSPKLRNSRNVAEEMDLQNYQAQLQNTFDVATSSIMPSRSDISL DSVELCSQEENTYLKGEGLSVSNSNVEHSRMAPQMDEILSQSVILNPANYLSTDSTNIFL NYALDQHGKHAPSPVKKLSYGSGVEADRKFRSEDLTGCLLYDGTTSRKKDSDSVKFNDAM PQFESFDFSLPLDSSTTEEKAFGSVHDSIQFGTFNSDPANKHEMSAVSGMYQLLATMSGK ATNCLFNDDERQPGESIDGSVTDIFGSSGLGHKGSFITPDFAASCSSNAANKKDNGENPL TPSVEKYCLGKLSEKNGSVSEHMGSIPELLCFRIDEDNDIAEGNDYREILPRSIGNQEQS GRKALQDITGLCQSIGNSASYSIGMSMDTGDTDMTVETCSSELNHHPDLRNDGDNKKPKE SCGSLLKKGGKMSRSLHNRLSKTETRHMNEANPGKRSKPSNIVANVASFIPLVKPKVQPT ACVKKDVRVKALETAEAAKRLEEKKRSEREMRKAAAKLEREKLKQEKELKQKEEEEQKKK RGADVATRKRQRDEEERREKERKRKCIEEARKQQKRPIERKHANINNAHPEGHDNKELQQ NSAEAVKGPVKFDEMTGLGGNATNSNNEMVVITDERPAISGPNCQENIPNSIEESYIMTP YKDSDDDDDEDFEHIEHSRRRRKLVPSWARGENLEKILLSNYVLDPRKIFARKRSSDLSE ICPAHIPQRGFR

Transcript Sequence

Transcript ID	Zm00001d020851_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:7:134654920:134662924:1 gene:Zm00001d020851 gene_biotype:protein_coding transcript_biotype:protein_coding description:CONTAINS InterPro DOMAIN/s: Inner centromere protein ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 3 /.../urce: NCBI BLink).
Sequence	GTAACCATCTTGATCTTGCTTTTACAAATCCTTCAAGTGAAGACCCATCTTCTACCAGTT CTCAGGGACCTCATTCTATGGGAAGGTTGTTGCTTAATCATGTTAAGTCAAGAAATTTGA ACCCTGACAGTGAACCAGTGGAGCAGCACCACAAATATACTTCAGAATGTGGCCATCCTG ATCTTACTAGTATGCATTCTCCAAATAAGAAACCATCTCTGACGTGTCCTGTTGAAGCAC CGAATTCTATGGGTGAACCATTACTTCATAAGGATACAGAACATATTCCTGAAACCAATT CTTTGGGAAGAGCATACTCCAAGTTCAGCCAACCACTTAAAATAGATACATCAAACAGTA ATGAAACCAATTGTTCTGTGGTCAACTCACTGCTTGATAATGATACATTGCAGGCCACTG AGGATACTGACAAACTGAAATCTCATGTCTCACCTCCATACAGTGGACCTTTGCAGCTAC CTACCCAACTAGCTGATGCAAGGTTTGGGGCTCATACATCACCAGGAATACTACCGAACA GTTTGTTAGGGGTGGATGGGTGTAATCACCTTTCAAATTTGCAAAAAAATGACACAAATA GCCGTTGCTCCCGATACAGGTCTGCTGTAAGCCTAGAGCTGCTTCCACCTCAAAATTTTA TTTCCACTGATGCTTGTCAATCAAGGCTCTTGTCTTATAGAACACAAAGTAATGACAAAC ATTCCAGTTCTGTTGCTTCTGCTATGAATGCCTCTAAATCTGCAGATAGTAAGTTACCTC AGGAACAGTATTTATTGGTCAGACCATCTTTGGAATTTAATGGAAGTATTTCAGATGCGG AAACTCCCTTGGGCCGTTCTCCTCTGGGCATGCAAAATGAAATGCTCCAAGCAGACCCAG TATATGACTCAGCCAATTGCTCTCCAGGAATTTTGGGTGATGATGCTCATGTCAGCAAAG CCTATGGTGGTTCTGCTGATAACAGAAAGAACATATCTGTGGTTCCGAAAGTTGGCCCCA TCAGTTCATCTAGAATCAGAGATATGCAAATAACAGAAAAGAATGTGGTCGCTTCATCAG AAAAAAACAATGGAAAACTGCAAGAAGGAAAAGCACAAGAGACCCCTCATCCTAAGGATG ATGTGCAAGTAAATGCTGATTCATGCACAGCTGAAAACATTGAGAAAATGAAGTCTCCAT GTACGTCAGAATCATGTGAGGAGAACAACAAGCACCAGGAGGATAGAGGACATGCTCAGA AGAAGTCAGCTGCAGATGTCGTCCAGATCAATGGGGGTATGTCATCCAAAAGAAAACGAA TGAAGTGCCAAGACATTGCATTTCCCAGTTCTCAAGACACAAATCCATTATTTCCGAACC ACCAAGATGGCATTGGCACCCATGTCGTAATTGCAGAAAAAATCTCAATGGAAATACAAC CTTCTGATCCTTACATCCTAAGAAGTACAGGATTTGATGACTTCATGCTTCTCAAATCTG AGACAAAGAATGATGCAGTGAACCACAGTATTTCAGTTGCAAGTGATGTTCAACAAAACG AGAGTTCTTCTCCCAAGCTAAGAAATAGCAGGAATGTAGCTGAAGAAATGGACCTCCAAA ACTATCAAGCACAGTTACAAAATACTTTTGATGTTGCTACAAGTTCTATTATGCCTAGCA GATCTGATATTTCTCTTGATAGTGTGGAGCTCTGCAGTCAAGAGGAAAATACTTACTTAA AAGGAGAGGGTTTAAGTGTTTCTAATTCCAATGTGGAACATTCACGGATGGCTCCTCAGA TGGATGAAATATTGTCTCAGAGTGTGATACTGAATCCAGCAAATTATCTCAGCACTGATT CAACAAATATATTCCTGAATTATGCCTTGGATCAACATGGTAAACATGCACCTTCTCCAG TTAAGAAATTAAGTTATGGCTCTGGCGTAGAAGCTGATAGGAAATTTAGAAGTGAAGATC TAACAGGATGTTTGCTATATGATGGTACTACCTCAAGGAAAAAGGATAGTGACTCTGTGA AATTTAATGATGCAATGCCACAATTTGAGAGCTTTGATTTTTCTCTTCCATTGGATAGCT CAACTACTGAAGAAAAGGCATTTGGGAGTGTTCATGATTCCATACAATTTGGTACATTTA ATTCAGATCCCGCTAATAAACATGAGATGAGTGCAGTAAGTGGCATGTATCAGCTATTGG CAACTATGTCAGGGAAAGCTACAAACTGCTTGTTTAATGATGATGAAAGGCAACCCGGTG AAAGTATTGATGGTAGTGTAACAGATATTTTTGGTTCAAGTGGATTGGGACATAAGGGTT CTTTCATTACTCCTGATTTTGCAGCGTCATGTTCTTCAAATGCTGCGAACAAAAAGGATA ATGGTGAAAATCCATTGACCCCTTCTGTTGAAAAGTATTGTCTGGGGAAACTTTCAGAAA AAAATGGATCTGTTTCGGAGCATATGGGTTCGATTCCTGAGCTTTTATGCTTCCGAATTG ATGAAGACAATGACATTGCAGAAGGAAATGATTACCGAGAGATATTACCTAGATCCATAG GCAACCAGGAGCAATCAGGAAGGAAAGCACTTCAGGATATCACTGGACTATGTCAAAGCA TTGGGAATTCTGCCTCTTATTCGATAGGTATGAGTATGGATACAGGTGACACAGACATGA CTGTAGAAACTTGCAGCAGTGAACTCAATCATCATCCAGATCTCAGGAATGATGGTGATA ACAAGAAGCCTAAAGAAAGTTGTGGTTCTTTATTAAAAAAAGGAGGGAAAATGTCTCGCT CCCTTCATAACAGATTAAGCAAGACAGAAACAAGGCACATGAATGAAGCAAATCCTGGAA AGCGTTCTAAGCCTAGTAATATTGTTGCTAATGTGGCATCTTTTATACCTCTTGTGAAGC CAAAGGTGCAACCAACAGCATGTGTGAAAAAAGATGTTAGAGTGAAAGCACTTGAGACAG CTGAAGCTGCAAAACGTCTTGAAGAAAAGAAACGAAGTGAACGTGAAATGCGCAAAGCAG CAGCAAAACTAGAGCGTGAGAAACTGAAGCAAGAGAAAGAGTTAAAGCAAAAAGAGGAAG AGGAACAGAAGAAGAAAAGAGGTGCTGATGTGGCAACAAGGAAGAGGCAGAGGGATGAGG AGGAAAGGAGGGAGAAGGAGAGAAAAAGGAAATGCATTGAAGAAGCTCGAAAACAACAGA AGCGACCTATTGAAAGAAAACATGCCAACATTAACAATGCTCATCCAGAAGGTCATGATA ATAAGGAGCTGCAGCAGAATTCGGCTGAAGCGGTGAAAGGCCCAGTAAAATTTGATGAAA TGACAGGTCTTGGAGGAAATGCCACTAACAGTAACAATGAAATGGTTGTGATTACCGATG AGAGGCCTGCAATTTCTGGACCTAATTGTCAGGAAAATATCCCAAACAGTATTGAGGAGT CATACATAATGACTCCATATAAAGATTCTGATGATGATGATGATGAGGATTTCGAACATA TAGAACATTCAAGGCGTAGGAGGAAATTGGTTCCTTCATGGGCTCGGGGAGAGAACTTGG AGAAAATCTTGTTATCCAATTATGTTTTGGACCCTAGGAAAATCTTTGCACGAAAACGCT CCTCTGATCTCTCTGAAATTTGTCCTGCCCACATACCGCAACGTGGTTTCAGATGAGTTT CTTTCCTAGTTCGAAAATAGGTCCCAGATGAGCTTGCATTGACTGAACTCTTGGTTGTAC GCTGCTGCCTTTCGTCAGGCAGTTTGTGTATAAGCTGGTTTCACTAGTTTCATATATGTA AGAACAACATTCTTGTACCGTTAGGCAACTGCGGCAACGATCGTACGTTGTTGTACATAG TTTCGATTAGTTCACCAAGGCTTTTGATTCGAC