Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d020799_T018
CDS Infomation

cds chromosome:B73_RefGen_v4:7:133233005:133244601:-1 gene:Zm00001d020799 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:isoamylase-type starch debranching enzyme3 description: isoamylase-type starch debranching enzyme3
Sequence

ATGGAACTACTTCCTGTTTTTGAGTTCGATGAGCTGGAGTTGAAGAGGTTCCCTAACCCA
AGGGACCACATGGTAAATACATGGGGATATTCTACAATCAACTTTTTTGCGCCCATGAGT
CGTTATGCTAGTGCTGGTGGTGGACCTGTGGCTGCTTCCAAAGAGCTCAAACAGATGGTC
AAGGCATTTCATAATTCTGGAATTGAGGTTATTTTGGATGTAGTTTACAACCATACAAAT
GAAGCTGATGATGTTAACCCTTACATGACTTCCTTTCGTGGTATTGATAACAAGGTCTAT
TACATGTTAGATCTCAACAACAGTGCACAGCTGCTGAACTTCTCGGGTTGCGGGAATACA
CTAAACTGCAACCATCCTGTTGTCAAGGAGCTTGTACTTGACAGTTTAAGACATTGGGTT
AAGGAGTATCACATAGATGGATTTCGGTTTGACCTTGCGAGTGTTCTTTGTCGTGGACCA
GATGGCAGTCCTCTTGATGCACCTCCACTTATTAAGGAAATTGCCAAAGACTCTGTATTG
TCTAGATGTAAGATCATTGCTGAACCTTGGGACTGTGGTGGCCTTTATCTAGTAGGGAGG
TTCCCTAATTGGGACAGGTGGGCTGAATGGAACGGGAAGTACAGAGATGATATTCGAAGA
TTTATTAAGGGAGATCCTGGTATGAAGGGGGTGTTTGCAACTCGCGTTTCTGGTTCTGCA
GATCTCTACCAGGTGAACAATCGGAAGCCTTACCATAGTGTGAACTTTGTAATTGCTCAT
GATGGATTTACTTTATGTGACCTTGTTTCATATAACTCCAAGCACAATGATGCAAATGGA
GAAGGTGGTCGTGATGGGTGCAATGACAACTACAGCTGGAACTGTGGCATTGAAGGAGAA
ACAAATGATTTGAATGTGCTAAGTCTTCGTTCAAGGCAAATGAAGAACTTCCATGTGGCA
TTAATGATTTCCCAGGGTACTCCAATGATGCTGATGGGAGATGAATATGGTCACACACGT
TATGGAAACAACAATAGCTATGGACATGATACTCACATAAATAATTTTCAGTGGGGCCAG
TTGGAAGAAAGGAAGGATGGCCATTTCAGGTTTTTCTCAGAGATGATCAAGTTTCGGCAT
AACCATCCTATATTGAGACGAGACAGGTTTCTCAACAAAAATGATGTCACTTGGCATGAA
AATCGTTGGGAGAACCAGGACAGCAAATTTTTGGCATTTACGATACATGATCACAGTTCT
GGTGGAGACATCTATTTGGCATTCAATGCTCATGAGTATTTTGTGGATGCTGTAATTCCC
CCACCACCACACCATAAATCTTGGAGTCGTGTGGTGGATACCAACCTGGAATCACCAAAG
GATATTGTCCCAGAAGGGGTGCCATTCACAGGTTCAGGGTACAGGATTGCTCCCTACTCT
TCCATCTTGCTTAAGGCAAAGCCTTAG

Peptide Sequence

PEP ID

Zm00001d020799_P018
PEP Infomation

pep chromosome:B73_RefGen_v4:7:133233005:133244601:-1 gene:Zm00001d020799 transcript:Zm00001d020799_T018 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:isoamylase-type starch debranching enzyme3 description: isoamylase-type starch debranching enzyme3
Sequence

MELLPVFEFDELELKRFPNPRDHMVNTWGYSTINFFAPMSRYASAGGGPVAASKELKQMV
KAFHNSGIEVILDVVYNHTNEADDVNPYMTSFRGIDNKVYYMLDLNNSAQLLNFSGCGNT
LNCNHPVVKELVLDSLRHWVKEYHIDGFRFDLASVLCRGPDGSPLDAPPLIKEIAKDSVL
SRCKIIAEPWDCGGLYLVGRFPNWDRWAEWNGKYRDDIRRFIKGDPGMKGVFATRVSGSA
DLYQVNNRKPYHSVNFVIAHDGFTLCDLVSYNSKHNDANGEGGRDGCNDNYSWNCGIEGE
TNDLNVLSLRSRQMKNFHVALMISQGTPMMLMGDEYGHTRYGNNNSYGHDTHINNFQWGQ
LEERKDGHFRFFSEMIKFRHNHPILRRDRFLNKNDVTWHENRWENQDSKFLAFTIHDHSS
GGDIYLAFNAHEYFVDAVIPPPPHHKSWSRVVDTNLESPKDIVPEGVPFTGSGYRIAPYS
SILLKAKP

Transcript Sequence

Transcript ID

Zm00001d020799_T018
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:133233005:133244601:-1 gene:Zm00001d020799 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:isoamylase-type starch debranching enzyme3 description: isoamylase-type starch debranching enzyme3
Sequence

CACAAGAGAAAGGCCGTCCGCCCATCTTGCTATCCTCCCGAGCGGCCGAGTCTGCTCCAA
CTCCAACTCCGCGCATGGACAACCACGTGTCCCGGAGGCCTGGAGTCCCCGTCCGTCCCT
TCCGCGCGCGCTCCCCAAGCGTCCGATCACACTCCTCGGTCCCACGCTTGGATGGATTCC
GTCGGTACAAATCGGCCCCCGCTGCGCCCCGTTGCCGCCGCAGCTACTCGACGCAGCGCG
CTCCTGCGCCCCCCTAGCCACCTCGGGCTCGGCAATCGTTTTGCGGAGACTAAGCTTGGG
ATCGCGTCAGGGTGTGGAGGAGGAGGAGGGTATTTTGGAAAGGTACAGGGATTTGATGCC
TTGCGGAGTACCACGACGAAAGTTCAGAGCGGGAAGGCGGGGAGGAGTGTGACCAAGGAA
ATGGGACACACTTCATCTGGCAATGAAGTGCCCTTGAAATATTCTTCAGGCAAAGCCTTC
CCCCTAGGAGTGTCACAAGTTGACGATGGGTTAAATTTTGCAATATTCTCACAACATGCT
TCTTCTGTCACCCTTTGCTTGAATTTTCCTGAGAGGGTTTCAAAGAGATGTCAATACTGT
TTGCACAACCCGCCACACATCATTTGGTGTTTTGGGATGCGCTTGGCACACTGAAATCTG
AAAGGCAACCAAGATGATGTGGACATTGTAGAGTTTGCTTTAGACCGCCAGAAGAACAAA
ACTGGAGATATATGGCATGTGTCAGTGGAGGGTTTGCCTGCTTCTGGTGTTCTTTATGGG
TATCGCATTAATGGTCCTCAAGGGTGGCAACAAGGTCATAGATTTGATGACAGCGTTATT
CTTCTGGACCCCTATGCAAAATTAGTTTATGGTCGAAAGCACTTTGCTGTTGAAAAAGAG
AAGCCAAGCCAGCTTTTCGGAACATATGATTTCGATAGCTCACCTTTTGACTGGGGTGAC
AATTATAAGCTTCCTAATTTGCCTGAGACAGATCTTGTTATATATGAAATGAATGTCCGT
GCCTTCACTGCCGACGAGTCAAGCAGGCTTGCTCCAGCTATTCGTGGAAGTTACCTTGGT
GTCATTGATAAATGGAACTACTTCCTGTTTTTGAGTTCGATGAGCTGGAGTTGAAGAGGT
TCCCTAACCCAAGGGACCACATGGTAAATACATGGGGATATTCTACAATCAACTTTTTTG
CGCCCATGAGTCGTTATGCTAGTGCTGGTGGTGGACCTGTGGCTGCTTCCAAAGAGCTCA
AACAGATGGTCAAGGCATTTCATAATTCTGGAATTGAGGTTATTTTGGATGTAGTTTACA
ACCATACAAATGAAGCTGATGATGTTAACCCTTACATGACTTCCTTTCGTGGTATTGATA
ACAAGGTCTATTACATGTTAGATCTCAACAACAGTGCACAGCTGCTGAACTTCTCGGGTT
GCGGGAATACACTAAACTGCAACCATCCTGTTGTCAAGGAGCTTGTACTTGACAGTTTAA
GACATTGGGTTAAGGAGTATCACATAGATGGATTTCGGTTTGACCTTGCGAGTGTTCTTT
GTCGTGGACCAGATGGCAGTCCTCTTGATGCACCTCCACTTATTAAGGAAATTGCCAAAG
ACTCTGTATTGTCTAGATGTAAGATCATTGCTGAACCTTGGGACTGTGGTGGCCTTTATC
TAGTAGGGAGGTTCCCTAATTGGGACAGGTGGGCTGAATGGAACGGGAAGTACAGAGATG
ATATTCGAAGATTTATTAAGGGAGATCCTGGTATGAAGGGGGTGTTTGCAACTCGCGTTT
CTGGTTCTGCAGATCTCTACCAGGTGAACAATCGGAAGCCTTACCATAGTGTGAACTTTG
TAATTGCTCATGATGGATTTACTTTATGTGACCTTGTTTCATATAACTCCAAGCACAATG
ATGCAAATGGAGAAGGTGGTCGTGATGGGTGCAATGACAACTACAGCTGGAACTGTGGCA
TTGAAGGAGAAACAAATGATTTGAATGTGCTAAGTCTTCGTTCAAGGCAAATGAAGAACT
TCCATGTGGCATTAATGATTTCCCAGGGTACTCCAATGATGCTGATGGGAGATGAATATG
GTCACACACGTTATGGAAACAACAATAGCTATGGACATGATACTCACATAAATAATTTTC
AGTGGGGCCAGTTGGAAGAAAGGAAGGATGGCCATTTCAGGTTTTTCTCAGAGATGATCA
AGTTTCGGCATAACCATCCTATATTGAGACGAGACAGGTTTCTCAACAAAAATGATGTCA
CTTGGCATGAAAATCGTTGGGAGAACCAGGACAGCAAATTTTTGGCATTTACGATACATG
ATCACAGTTCTGGTGGAGACATCTATTTGGCATTCAATGCTCATGAGTATTTTGTGGATG
CTGTAATTCCCCCACCACCACACCATAAATCTTGGAGTCGTGTGGTGGATACCAACCTGG
AATCACCAAAGGATATTGTCCCAGAAGGGGTGCCATTCACAGGTTCAGGGTACAGGATTG
CTCCCTACTCTTCCATCTTGCTTAAGGCAAAGCCTTAGAATGGCGGAGGCAAGTCATTCT
CAAGTAAGCACGAATAATGGTGTTGTGATCCCTAACTTTCCAAGCTCTTAGCCAACTGTA
CTGCAAGTATAGCAAACTTTGGTATGTGAAGTCGGACCAACCCTTGCGGAAATCAACGGA
AGCCATGGTTTGCTAAAGGTATACTCATGGAGAATTGGAGATATGGCAAACACATACGCA
AGTAACCTCCACACATCTAAGCAAGAAGAGCCTTTCATTAGGGGATGCATGGCTCGAGGA
AACTATATTTGCATTTGGTTGATTCATTTTTATTTGTTGCACATGTCAGTATGTCACCTG
TGTGTGTCAAGCTCTTATTTGCTTAAAAATTGGACATTCCTT